Bug#848768: biojava4-live: FTBFS: [javac] /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java:27: error: package o
I have already fixed the issue. The problem was a library previously in suggest for runtime is now needed for build. Le mar. 20 déc. 2016 à 12:43, Ximin Luo a écrit : > Hey all, > > Indeed, jmol in unstable is still version 12. If biojava4-live 4.2.4 is > supposed to work with 14, that would be the problem. > > I will upload jmol 14 to unstable in the next 2-3 hours, you can try it > again with that. Perhaps it would already solve this FTBFS. > > X > > olivier sallou: > > Le mar. 20 déc. 2016 à 08:55, olivier sallou > a > > écrit : > > > >> Le mar. 20 déc. 2016 à 08:38, Andreas Tille a écrit > : > >> > >> Hi Olivier and Ximin, > >> > >> I stripped the quote of the build log below but to me it seems to be > >> related to the jmol upgrade. > >> > >> > > jmol is still in 12.2.32, looks like to be an other pb, I am > investigating > > > > > >> > >> I saw the bug this morning, I gonna have a look > >> > >> > >> Any help to get this fixed would be really welcome. > >> > >> Kind regards > >> > >> Andreas. > >> > >> On Mon, Dec 19, 2016 at 10:08:48PM +0100, Lucas Nussbaum wrote: > >>> Source: biojava4-live > >>> Version: 4.2.4+dfsg-1 > >>> Severity: serious > >>> Tags: stretch sid > >>> User: debian...@lists.debian.org > >>> Usertags: qa-ftbfs-20161219 qa-ftbfs > >>> Justification: FTBFS on amd64 > >>> > >>> Hi, > >>> > >>> During a rebuild of all packages in sid, your package failed to build > on > >>> amd64. > >>> ... > [javac] UndirectedGraph > >> graph = new SimpleGraph( > [javac] > >> ^ > [javac] symbol: class DefaultEdge > [javac] location: class SymmetryTools > [javac] > >> > /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java:481: > >> error: cannot find symbol > [javac] DefaultEdge.class); > [javac] ^ > [javac] symbol: class DefaultEdge > [javac] location: class SymmetryTools > [javac] Note: Some input files use or override a deprecated API. > [javac] Note: Recompile with -Xlint:deprecation for details. > [javac] Note: > >> > /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/MetalBondConsumer.java > >> uses unchecked or unsafe operations. > [javac] Note: Recompile with -Xlint:unchecked for details. > [javac] 67 errors > > BUILD FAILED > >> > >> -- > >> http://fam-tille.de > >> > >> > > > > > -- > GPG: ed25519/56034877E1F87C35 > GPG: rsa4096/1318EFAC5FBBDBCE > https://github.com/infinity0/pubkeys.git >
Bug#848768: biojava4-live: FTBFS: [javac] /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java:27: error: package o
Hey all, Indeed, jmol in unstable is still version 12. If biojava4-live 4.2.4 is supposed to work with 14, that would be the problem. I will upload jmol 14 to unstable in the next 2-3 hours, you can try it again with that. Perhaps it would already solve this FTBFS. X olivier sallou: > Le mar. 20 déc. 2016 à 08:55, olivier sallou a > écrit : > >> Le mar. 20 déc. 2016 à 08:38, Andreas Tille a écrit : >> >> Hi Olivier and Ximin, >> >> I stripped the quote of the build log below but to me it seems to be >> related to the jmol upgrade. >> >> > jmol is still in 12.2.32, looks like to be an other pb, I am investigating > > >> >> I saw the bug this morning, I gonna have a look >> >> >> Any help to get this fixed would be really welcome. >> >> Kind regards >> >> Andreas. >> >> On Mon, Dec 19, 2016 at 10:08:48PM +0100, Lucas Nussbaum wrote: >>> Source: biojava4-live >>> Version: 4.2.4+dfsg-1 >>> Severity: serious >>> Tags: stretch sid >>> User: debian...@lists.debian.org >>> Usertags: qa-ftbfs-20161219 qa-ftbfs >>> Justification: FTBFS on amd64 >>> >>> Hi, >>> >>> During a rebuild of all packages in sid, your package failed to build on >>> amd64. >>> ... [javac] UndirectedGraph >> graph = new SimpleGraph( [javac] >> ^ [javac] symbol: class DefaultEdge [javac] location: class SymmetryTools [javac] >> /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java:481: >> error: cannot find symbol [javac] DefaultEdge.class); [javac] ^ [javac] symbol: class DefaultEdge [javac] location: class SymmetryTools [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: >> /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/MetalBondConsumer.java >> uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 67 errors BUILD FAILED >> >> -- >> http://fam-tille.de >> >> > -- GPG: ed25519/56034877E1F87C35 GPG: rsa4096/1318EFAC5FBBDBCE https://github.com/infinity0/pubkeys.git
Bug#848768: biojava4-live: FTBFS: [javac] /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java:27: error: package o
Le mar. 20 déc. 2016 à 08:55, olivier sallou a écrit : > Le mar. 20 déc. 2016 à 08:38, Andreas Tille a écrit : > > Hi Olivier and Ximin, > > I stripped the quote of the build log below but to me it seems to be > related to the jmol upgrade. > > jmol is still in 12.2.32, looks like to be an other pb, I am investigating > > I saw the bug this morning, I gonna have a look > > > Any help to get this fixed would be really welcome. > > Kind regards > > Andreas. > > On Mon, Dec 19, 2016 at 10:08:48PM +0100, Lucas Nussbaum wrote: > > Source: biojava4-live > > Version: 4.2.4+dfsg-1 > > Severity: serious > > Tags: stretch sid > > User: debian...@lists.debian.org > > Usertags: qa-ftbfs-20161219 qa-ftbfs > > Justification: FTBFS on amd64 > > > > Hi, > > > > During a rebuild of all packages in sid, your package failed to build on > > amd64. > > ... > > > [javac] UndirectedGraph > graph = new SimpleGraph( > > > [javac] > ^ > > > [javac] symbol: class DefaultEdge > > > [javac] location: class SymmetryTools > > > [javac] > /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java:481: > error: cannot find symbol > > > [javac] DefaultEdge.class); > > > [javac] ^ > > > [javac] symbol: class DefaultEdge > > > [javac] location: class SymmetryTools > > > [javac] Note: Some input files use or override a deprecated API. > > > [javac] Note: Recompile with -Xlint:deprecation for details. > > > [javac] Note: > /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/MetalBondConsumer.java > uses unchecked or unsafe operations. > > > [javac] Note: Recompile with -Xlint:unchecked for details. > > > [javac] 67 errors > > > > > > BUILD FAILED > > -- > http://fam-tille.de > >
Bug#848768: biojava4-live: FTBFS: [javac] /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java:27: error: package o
Le mar. 20 déc. 2016 à 08:38, Andreas Tille a écrit : > Hi Olivier and Ximin, > > I stripped the quote of the build log below but to me it seems to be > related to the jmol upgrade. > I saw the bug this morning, I gonna have a look > > Any help to get this fixed would be really welcome. > > Kind regards > > Andreas. > > On Mon, Dec 19, 2016 at 10:08:48PM +0100, Lucas Nussbaum wrote: > > Source: biojava4-live > > Version: 4.2.4+dfsg-1 > > Severity: serious > > Tags: stretch sid > > User: debian...@lists.debian.org > > Usertags: qa-ftbfs-20161219 qa-ftbfs > > Justification: FTBFS on amd64 > > > > Hi, > > > > During a rebuild of all packages in sid, your package failed to build on > > amd64. > > ... > > > [javac] UndirectedGraph > graph = new SimpleGraph( > > > [javac] > ^ > > > [javac] symbol: class DefaultEdge > > > [javac] location: class SymmetryTools > > > [javac] > /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java:481: > error: cannot find symbol > > > [javac] DefaultEdge.class); > > > [javac] ^ > > > [javac] symbol: class DefaultEdge > > > [javac] location: class SymmetryTools > > > [javac] Note: Some input files use or override a deprecated API. > > > [javac] Note: Recompile with -Xlint:deprecation for details. > > > [javac] Note: > /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/MetalBondConsumer.java > uses unchecked or unsafe operations. > > > [javac] Note: Recompile with -Xlint:unchecked for details. > > > [javac] 67 errors > > > > > > BUILD FAILED > > -- > http://fam-tille.de >
Bug#848768: biojava4-live: FTBFS: [javac] /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java:27: error: package o
Hi Olivier and Ximin, I stripped the quote of the build log below but to me it seems to be related to the jmol upgrade. Any help to get this fixed would be really welcome. Kind regards Andreas. On Mon, Dec 19, 2016 at 10:08:48PM +0100, Lucas Nussbaum wrote: > Source: biojava4-live > Version: 4.2.4+dfsg-1 > Severity: serious > Tags: stretch sid > User: debian...@lists.debian.org > Usertags: qa-ftbfs-20161219 qa-ftbfs > Justification: FTBFS on amd64 > > Hi, > > During a rebuild of all packages in sid, your package failed to build on > amd64. > ... > > [javac] UndirectedGraph graph = > > new SimpleGraph( > > [javac] > >^ > > [javac] symbol: class DefaultEdge > > [javac] location: class SymmetryTools > > [javac] > > /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java:481: > > error: cannot find symbol > > [javac] DefaultEdge.class); > > [javac] ^ > > [javac] symbol: class DefaultEdge > > [javac] location: class SymmetryTools > > [javac] Note: Some input files use or override a deprecated API. > > [javac] Note: Recompile with -Xlint:deprecation for details. > > [javac] Note: > > /<>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/MetalBondConsumer.java > > uses unchecked or unsafe operations. > > [javac] Note: Recompile with -Xlint:unchecked for details. > > [javac] 67 errors > > > > BUILD FAILED -- http://fam-tille.de
