Your message dated Thu, 26 Oct 2017 20:07:59 +0200 with message-id <CAM8zJQsmPyGRDsk-06Q2_deAZf=j_sl3gjhcutar6t7utu3...@riseup.net> and subject line Re: [Debian-med-packaging] Bug#871314: pysam 0.12 depends on libhts2 1.5 has caused the Debian Bug report #871314, regarding htslib: new version break python-pysam to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 871314: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=871314 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-pysam Version: 0.11.2.2+ds-3 Severity: serious Tags: buster sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20170805 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<BUILDDIR>>/python-pysam-0.11.2.2+ds/tests/samtools_test.py", line > 149, in setUp > self.check_version() > File "/<<BUILDDIR>>/python-pysam-0.11.2.2+ds/tests/samtools_test.py", line > 139, in check_version > samtools_version)) > ValueError: versions of pysam.samtools and samtools differ: 1.4.1 != 1.5 > > ---------------------------------------------------------------------- > Ran 760 tests in 56.829s > > FAILED (SKIP=5, errors=2) > (0, 0) > E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd > /<<BUILDDIR>>/python-pysam-0.11.2.2+ds/.pybuild/pythonX.Y_2.7/build; > python2.7 -m nose > dh_auto_test: pybuild --test -i python{version} -p 2.7 returned exit code 13 > debian/rules:39: recipe for target 'override_dh_auto_test' failed The full build log is available from: http://aws-logs.debian.net/2017/08/05/python-pysam_0.11.2.2+ds-3_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---We need to figure out the dependencies between htslib, bcftools, samtools and python-pysam, and follow policy for library transitions.
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