Your message dated Fri, 26 Apr 2019 05:33:21 +0000 with message-id <e1hjtu9-0002yu...@fasolo.debian.org> and subject line Bug#926935: fixed in arpack 3.7.0-2 has caused the Debian Bug report #926935, regarding arpack: FTBFS (does not honor parallel=n in DEB_BUILD_OPTIONS) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 926935: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=926935 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:arpack Version: 3.7.0-1 Severity: serious Tags: ftbfs patch Dear maintainer: I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:12: installing 'build-aux/compile' configure.ac:17: installing 'build-aux/config.guess' [... snipped ...] make[4]: Leaving directory '/<<PKGBUILDDIR>>/PARPACK/SRC/MPI' Making check in . make[4]: Entering directory '/<<PKGBUILDDIR>>/PARPACK' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<<PKGBUILDDIR>>/PARPACK' Making check in TESTS/MPI make[4]: Entering directory '/<<PKGBUILDDIR>>/PARPACK/TESTS/MPI' make issue46 make[5]: Entering directory '/<<PKGBUILDDIR>>/PARPACK/TESTS/MPI' mpif77 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c -o issue46.o issue46.f /bin/bash ../../../libtool --tag=F77 --mode=link mpif77 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wl,-z,relro -o issue46 issue46.o ../../../PARPACK/SRC/MPI/libparpack.la -llapack -lblas libtool: link: mpif77 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wl,-z -Wl,relro -o .libs/issue46 issue46.o ../../../PARPACK/SRC/MPI/.libs/libparpack.so -llapack -lblas make[5]: Leaving directory '/<<PKGBUILDDIR>>/PARPACK/TESTS/MPI' make check-TESTS make[5]: Entering directory '/<<PKGBUILDDIR>>/PARPACK/TESTS/MPI' make[6]: Entering directory '/<<PKGBUILDDIR>>/PARPACK/TESTS/MPI' FAIL: issue46 ============================================================================ Testsuite summary for ARPACK-NG 3.7.0 ============================================================================ # TOTAL: 1 # PASS: 0 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See PARPACK/TESTS/MPI/test-suite.log Please report to https://github.com/opencollab/arpack-ng/issues/ ============================================================================ make[6]: *** [Makefile:830: test-suite.log] Error 1 make[6]: Leaving directory '/<<PKGBUILDDIR>>/PARPACK/TESTS/MPI' make[5]: *** [Makefile:938: check-TESTS] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/PARPACK/TESTS/MPI' make[4]: *** [Makefile:1026: check-am] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/PARPACK/TESTS/MPI' make[3]: *** [Makefile:387: check-recursive] Error 1 make[3]: Leaving directory '/<<PKGBUILDDIR>>/PARPACK' make[2]: *** [Makefile:509: check-recursive] Error 1 make[2]: Leaving directory '/<<PKGBUILDDIR>>' make[1]: *** [debian/rules:15: override_dh_auto_test] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:7: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- This used to work ok in all my autobuilders in version 3.5.0+real-2, but it started to fail in some of them in version 3.6.3-1. I've put a bunch of build logs here: https://people.debian.org/~sanvila/build-logs/arpack/ The problem seems to be that the Makefiles wrongly assume that the system has at least 2 CPUs, which may or may not be the case. A simple solution that seems to work is to set 'LOG_FLAGS = -n 1' in both PARPACK/EXAMPLES/MPI/Makefile.am and PARPACK/TESTS/MPI/Makefile.am, but it would be even better to honor parallel=n setting in DEB_BUILD_OPTIONS when there is one, as in the patch below. I did not find a simple way to reproduce this in any system. The usual recipe is to try "taskset -c 0 dpkg-buildpackage" but this does not seem to work here, so if you need a test machine to reproduce the failure please contact me privately and I will gladly provide one. Thanks. --- a/PARPACK/EXAMPLES/MPI/Makefile.am +++ b/PARPACK/EXAMPLES/MPI/Makefile.am @@ -12,7 +12,7 @@ check_PROGRAMS = $(SNDRV) $(DNDRV) $(SSDRV) $(DSDRV) $(CNDRV) $(ZNDRV) # Run MPI tests with "mpirun -n 2" LOG_COMPILER = mpirun -LOG_FLAGS = -n 2 +LOG_FLAGS = -n $(NUMJOBS) TESTS = $(check_PROGRAMS) --- a/PARPACK/TESTS/MPI/Makefile.am +++ b/PARPACK/TESTS/MPI/Makefile.am @@ -3,7 +3,7 @@ LDADD = $(top_builddir)/PARPACK/SRC/MPI/libparpack$(LIBSUFFIX).la $(LAPACK_LIBS) # Run MPI tests with "mpirun -n 2" LOG_COMPILER = mpirun -LOG_FLAGS = -n 2 +LOG_FLAGS = -n $(NUMJOBS) SISS = issue46 --- a/debian/rules +++ b/debian/rules @@ -6,6 +6,12 @@ %: dh $@ +export NUMJOBS = $(shell nproc) + +ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) + NUMJOBS = $(patsubst parallel=%,%,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) +endif + override_dh_auto_configure: # Enforce generic BLAS (to avoid tying to ATLAS or OpenBLAS) dh_auto_configure -- --enable-mpi --with-blas=blas
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--- Begin Message ---Source: arpack Source-Version: 3.7.0-2 We believe that the bug you reported is fixed in the latest version of arpack, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 926...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Ghislain Antony Vaillant <ghisv...@gmail.com> (supplier of updated arpack package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 25 Apr 2019 00:34:46 +0200 Source: arpack Binary: libarpack2 libarpack2-dev libparpack2 libparpack2-dev Architecture: source Version: 3.7.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Team <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Ghislain Antony Vaillant <ghisv...@gmail.com> Description: libarpack2 - Fortran77 subroutines to solve large scale eigenvalue problems libarpack2-dev - Fortran77 subroutines to solve large scale eigenvalue problems (d libparpack2 - Parallel subroutines to solve large scale eigenvalue problems libparpack2-dev - Parallel subroutines to solve large scale eigenvalue problems (de Closes: 926935 Changes: arpack (3.7.0-2) unstable; urgency=medium . * Team upload. * Fix FTBFS on single core builders - New patch 0001-Run-MPI-tests-on-a-single-cpu.patch Thanks to Santiago Vila (Closes: #926935) Checksums-Sha1: bb3303952b49d8405ddc01e2ffda3426ec157499 2183 arpack_3.7.0-2.dsc bfa610de2fc3ba6b33ac1953b89d41e4519f7f34 9212 arpack_3.7.0-2.debian.tar.xz Checksums-Sha256: 07cd2bb12dd05de066093267ac1fdaa354133497c742b442142154534fb63da8 2183 arpack_3.7.0-2.dsc aa4522861be6464eb94bcb27f051cd93689246bfd8bf6359a43f80b4feccf159 9212 arpack_3.7.0-2.debian.tar.xz Files: 2f288be803bfd38b2366d53debb8526a 2183 math optional arpack_3.7.0-2.dsc fa72d36debc4a775637483a4e8ec603c 9212 math optional arpack_3.7.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlzCk08OHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtFZOg//ZXWg4wnSXyKIX0FG3TCQtIvLEwv0DsNdGtZm +pWMlVuj2lnEholg5YezOOICmb1Zuj7pyBLjJ66ZgClflQTuZ1LfVpMXEFesI8Kk GJ60KEjA9sn6KcBlXktH9VHHy5lHVbs06qxe9Rlf118ZC6Y4gCdtCPcP7xUR9KqX 1o4Q2Frr82e0TobHx/gphUeFZrZDctFFIXgyjHqAphQ8y1rBH/mlLUhON/V0sinZ xxZphb/jE59ED3M1Is7AC4PFnTS0pVM9muUZItzgJis7EUej7IB6Psu3EOCcc9Rj x+W54Sk3cQE1X/FPAtQfnD9Iwx8LZYW78ys5CwRfy6u8QCBRFtai8KNVHvDxSGoC YhY+gSZURE3GUWVrmDeN16BERVM6LCUl8kw38/eOnewLEBM7a8OWkLAtU27mIKEK xXl6PcuYW2Metk1qoicci7lUPdFgjCov+6Kc4vdTvOUpY2BelYiPUtAXKaFw2gXL 2bLT5jg6k1u4hdwIY+SnN1UxS3cplQTNJk6Ibbv1OcSxbnXqDyJgnYQzTyUq7q2C UBeosgKWvOYMbLX9OAownyb7q10rLjs8KorXUaoCP71j8zUuXIS/0TySxVkflhr1 p9PlMsDhu9bMduv61fPlUYgsERVOSVhyEXGsmU2kNt6RU7t+yQxuMFni2FzrRy/v oCVII4I= =YnGv -----END PGP SIGNATURE-----
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