Bug#986307: marked as done (scrappie: flaky armhf autopkgtest: Invalid control character at: line 1 column 91 (char 90))
Your message dated Sun, 4 Apr 2021 15:24:03 +0530
with message-id
and subject line Re: [Debian-med-packaging] Bug#986307: marked as done
(scrappie: flaky armhf autopkgtest: Invalid control character at: line 1 column
91 (char 90))
has caused the Debian Bug report #986307,
regarding scrappie: flaky armhf autopkgtest: Invalid control character at: line
1 column 91 (char 90)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
986307: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=986307
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: scrappie
Version: 1.4.2-4
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: flaky
Dear maintainer(s),
Your package has an autopkgtest, great. However, I looked into
the history of your autopkgtest [1] and I noticed the it fails regularly
on armhf, while sporadically a rerun passes. I copied some of the output
at the bottom of this report. It seems there's regularly a non-printable
character at the end of the UUID of the first two tests too, including
in this case.
Because the unstable-to-testing migration software now blocks on
regressions in testing, flaky tests, i.e. tests that flip between
passing and failing without changes to the list of installed packages,
are causing people unrelated to your package to spend time on these
tests.
Paul
[1] https://ci.debian.net/packages/s/scrappie/testing/armhf/
https://ci.debian.net/data/autopkgtest/testing/armhf/s/scrappie/11240539/log.gz
autopkgtest [22:23:14]: test run-unit-test: [---
Test functionality
Test 1
>read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5",
"uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0 ", "normalised_score" :
0.479833, "nblock" : 5778, "sequence_length" : 2448,
"blocks_per_base" : 2.360294, "nsample" : 29150, "trim" : [ 200, 29090 ] }
PASS
Test 2
>read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5",
"uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0%", "normalised_score" :
0.459902, "nevent" : 5787, "sequence_length" : 1695,
"events_per_base" : 3.414159 }
PASS
Test 3
Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.5zv20404/downtmp/autopkgtest_tmp/misc/json_to_tsv.py",
line 5, in
first_entry = json.loads(stdin.readline())
File "/usr/lib/python3.9/json/__init__.py", line 346, in loads
return _default_decoder.decode(s)
File "/usr/lib/python3.9/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/usr/lib/python3.9/json/decoder.py", line 353, in raw_decode
obj, end = self.scan_once(s, idx)
json.decoder.JSONDecodeError: Invalid control character at: line 1
column 91 (char 90)
autopkgtest [22:24:01]: test run-unit-test: ---]
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Control: fixed -1 1.4.2-7
Hi,
On Sat, 3 Apr 2021 11:39:55 +0200 Graham Inggs wrote:
> Control: reopen -1
>
> The autopkgtest now fails with:
>
> dpkg-architecture: warning: cannot determine CC system type, falling
> back to default (native compilation)
> Skip Test 3 on armhf (see bug #986307)
> autopkgtest [08:53:06]: test run-unit-test: ---]
> autopkgtest [08:53:06]: test run-unit-test: - - - - - - - - - -
> results - - - - - - - - - -
> run-unit-testFAIL stderr: dpkg-architecture: warning: cannot
> determine CC system type, falling back to default (native compilation)
> autopkgtest [08:53:06]: test run-unit-test: - - - - - - - - - -
> stderr - - - - - - - - - -
> dpkg-architecture: warning: cannot determine CC system type, falling
> back to default (native compilation)
> autopkgtest [08:53:06]: summary
> run-unit-testFAIL stderr: dpkg-architecture: warning: cannot
> determine CC system type, falling back to default (native compilation)
Fixed this in 1.4.2-7
signature.asc
Description: PGP signature
--- End Message ---
Processed: Re: [Debian-med-packaging] Bug#986307: marked as done (scrappie: flaky armhf autopkgtest: Invalid control character at: line 1 column 91 (char 90))
Processing control commands:
> reopen -1
Bug #986307 {Done: Andreas Tille } [src:scrappie] scrappie:
flaky armhf autopkgtest: Invalid control character at: line 1 column 91 (char
90)
'reopen' may be inappropriate when a bug has been closed with a version;
all fixed versions will be cleared, and you may need to re-add them.
Bug reopened
No longer marked as fixed in versions scrappie/1.4.2-5.
--
986307: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=986307
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
Bug#986307: [Debian-med-packaging] Bug#986307: marked as done (scrappie: flaky armhf autopkgtest: Invalid control character at: line 1 column 91 (char 90))
Control: reopen -1 The autopkgtest now fails with: dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) Skip Test 3 on armhf (see bug #986307) autopkgtest [08:53:06]: test run-unit-test: ---] autopkgtest [08:53:06]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - run-unit-testFAIL stderr: dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) autopkgtest [08:53:06]: test run-unit-test: - - - - - - - - - - stderr - - - - - - - - - - dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) autopkgtest [08:53:06]: summary run-unit-testFAIL stderr: dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
Bug#986307: marked as done (scrappie: flaky armhf autopkgtest: Invalid control character at: line 1 column 91 (char 90))
Your message dated Sat, 03 Apr 2021 06:33:24 +
with message-id
and subject line Bug#986307: fixed in scrappie 1.4.2-5
has caused the Debian Bug report #986307,
regarding scrappie: flaky armhf autopkgtest: Invalid control character at: line
1 column 91 (char 90)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
986307: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=986307
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: scrappie
Version: 1.4.2-4
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: flaky
Dear maintainer(s),
Your package has an autopkgtest, great. However, I looked into
the history of your autopkgtest [1] and I noticed the it fails regularly
on armhf, while sporadically a rerun passes. I copied some of the output
at the bottom of this report. It seems there's regularly a non-printable
character at the end of the UUID of the first two tests too, including
in this case.
Because the unstable-to-testing migration software now blocks on
regressions in testing, flaky tests, i.e. tests that flip between
passing and failing without changes to the list of installed packages,
are causing people unrelated to your package to spend time on these
tests.
Paul
[1] https://ci.debian.net/packages/s/scrappie/testing/armhf/
https://ci.debian.net/data/autopkgtest/testing/armhf/s/scrappie/11240539/log.gz
autopkgtest [22:23:14]: test run-unit-test: [---
Test functionality
Test 1
>read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5",
"uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0 ", "normalised_score" :
0.479833, "nblock" : 5778, "sequence_length" : 2448,
"blocks_per_base" : 2.360294, "nsample" : 29150, "trim" : [ 200, 29090 ] }
PASS
Test 2
>read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5",
"uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0%", "normalised_score" :
0.459902, "nevent" : 5787, "sequence_length" : 1695,
"events_per_base" : 3.414159 }
PASS
Test 3
Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.5zv20404/downtmp/autopkgtest_tmp/misc/json_to_tsv.py",
line 5, in
first_entry = json.loads(stdin.readline())
File "/usr/lib/python3.9/json/__init__.py", line 346, in loads
return _default_decoder.decode(s)
File "/usr/lib/python3.9/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/usr/lib/python3.9/json/decoder.py", line 353, in raw_decode
obj, end = self.scan_once(s, idx)
json.decoder.JSONDecodeError: Invalid control character at: line 1
column 91 (char 90)
autopkgtest [22:24:01]: test run-unit-test: ---]
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: scrappie
Source-Version: 1.4.2-5
Done: Andreas Tille
We believe that the bug you reported is fixed in the latest version of
scrappie, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 986...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille (supplier of updated scrappie package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Format: 1.8
Date: Sat, 03 Apr 2021 07:48:47 +0200
Source: scrappie
Architecture: source
Version: 1.4.2-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
Changed-By: Andreas Tille
Closes: 986307
Changes:
scrappie (1.4.2-5) unstable; urgency=medium
.
* Team upload.
* Skip flaky test for armhf
Closes: #986307
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