Bug#956089: ITP: recan -- genetic distance plotting for recombination events analysis

2020-04-06 Thread Sao I Kuan
Package: wnpp
Severity: wishlist
Owner: Sao I Kuan 

* Package name: recan
  Version : 0.1.2
  Upstream Author : Yuriy Babin 
* URL : https://github.com/babinyurii/recan
* License : Expat
  Programming Lang: Python
  Description : genetic distance plotting for recombination events analysis

 recan is a Python package which allows to construct genetic distance   
   
 plots to explore and discover recombination events in viral genomes.   
   
 .  
   
 This method has been previously implemented in desktop software
   
 tools: RAT, Simplot and RDP4.

This package is a work which is part of COVID-19 BioHackathon [1,2].
The package will be team maintained (med-team).

[1] 
https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/Covid-19-hackathon
[2] 
https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/COVID-19-Hackathon-packages-needing-work



Bug#956076: ITP: plakativ -- print poster from PDF across multiple pages to glue together

2020-04-06 Thread Johannes 'josch' Schauer
Package: wnpp
Severity: wishlist
Owner: Johannes 'josch' Schauer 

* Package name: plakativ
  Version : 0.2
  Upstream Author : Johannes 'josch' Schauer 
* URL : https://gitlab.mister-muffin.de/josch/plakativ
* License : GPL3
  Programming Lang: Python
  Description : print poster from PDF across multiple pages to glue together

You have a page as a PDF and you want to make a poster from it but you
only have a normal office printer, so you need to print the PDF across
multiple pages that you can glue together later. The resulting PDF will
contain a lossless version of the original, split across multiple pages.
In addition to a regular grid, it can also generate complex layouts that
make nearly optimal use of paper area to avoid paper waste.

In contrast to PosteRazor, the input is a PDF file and not a raster
image. This is especially important for posters, as scaling up raster
images will create pixelation artifacts.

In contrast to pdfposter there is a GUI that previews the result,
borders for glueing are taken into account, no superfluous empty pages
are produced and the complex layouter will save paper.



Bug#956075: ITP: golang-github-viant-toolbox -- Toolbox - go utility library

2020-04-06 Thread Alois Micard

Package: wnpp
Severity: wishlist
Owner: Alois Micard 

* Package name: golang-github-viant-toolbox
  Version : 0.31.0-1
  Upstream Author : Viant, Inc
* URL : https://github.com/viant/toolbox
* License : Apache-2.0
  Programming Lang: Go
  Description : Toolbox - go utility library

This package is needed as indirect dependency for Syncthing.

Regards

--
Aloïs Micard 

GPG: DA4A A436 9BFA E299 67CD E85B F733 E871 0859 FCD2



Bug#956072: ITP: golang-github-viant-assertly -- Arbitraty datastructure validation

2020-04-06 Thread Alois Micard

Package: wnpp
Severity: wishlist
Owner: Alois Micard 

* Package name: golang-github-viant-assertly
  Version : 0.5.3-1
  Upstream Author : Viant, Inc
* URL : https://github.com/viant/assertly
* License : Apache-2.0
  Programming Lang: Go
  Description : Arbitraty datastructure validation

This package is needed as indirect dependency for Syncthing.

Regards

--
Aloïs Micard 

GPG: DA4A A436 9BFA E299 67CD E85B F733 E871 0859 FCD2



Bug#956070: ITP: python-etcd3 -- client for the etcd3 API

2020-04-06 Thread Thomas Goirand
Package: wnpp
Severity: wishlist
Owner: Thomas Goirand 

* Package name: python-etcd3
  Version : 0.12.0
  Upstream Author : Louis Taylor 
* URL : https://github.com/kragniz/python-etcd3
* License : Apache-2.0
  Programming Lang: Python
  Description : client for the etcd3 API

 This package contains the python-etcd3 library, which is a module to connect
 to an Etcd cluster.

Note: This module is needed by python3-tooz (this is a new dependency), which
is the heart of the OpenStack global cluster lock system.



Re: Python3 modules not built for all supported Python versions

2020-04-06 Thread Jochen Sprickerhof

Hi Emilio,

* Emilio Pozuelo Monfort  [2020-03-30 17:47]:

I've heard pybuild now has a cmake backend, so theoretically you could do
something like

%:
dh $@ --buildsystem=pybuild --system=cmake

[..]

I don't know if I'm missing an argument to dh_python3 so that it knows the
python version, or even if there's a better workaround. But perhaps pybuild
should be doing this automatically between the dh_auto_install calls so that
this kind of workarounds aren't necessary.


Thanks for looking into this and providing a patch!
I polished it a little:

https://salsa.debian.org/science-team/ros-geometry2/-/commit/11739091abe58007485772492fddbdc1a12a59c6

and uploaded a working version to the archive. Will fix all ros-* 
packages now.


Cheers Jochen


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Bug#956033: ITP: idseq-bench -- Benchmark generator for the IDseq Portal

2020-04-06 Thread Sao I Kuan
Package: wnpp
Severity: wishlist
Owner: Sao I Kuan 

* Package name: idseq-bench
  Version : 0.0~git20191121.9623264
  Upstream Author : Chan Zuckerberg Initiative
* URL : https://github.com/chanzuckerberg/idseq-bench
* License : Expat
  Programming Lang: Python
  Description : Benchmark generator for the IDseq Portal

 IDseq (Infectious Disease Sequencing Platform) is an unbiased global
 software platform that helps scientists identify pathogens in
 metagenomic sequencing data.
 .
  * Discover - Identify the pathogen landscape
  * Detect - Monitor and review potential outbreaks
  * Decipher - Find potential infecting organisms in large datasets
 .
 This package provides the benchmark generator for the IDseq Portal.

This package is a work which is part of COVID-19 BioHackathon [1,2].
The package will be team maintained (med-team).

[1] 
https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/Covid-19-hackathon
[2] 
https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/COVID-19-Hackathon-packages-needing-work