Bug#966302: ITP: dukpy -- Simple JavaScript interpreter for Python
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: dukpy Version : 0.2.3 Upstream Author : Alessandro Molina * URL : https://github.com/amol-/dukpy * License : Expat Programming Lang: Python Description : Simple JavaScript interpreter for Python A simple javascript interpreter for Python built on top of duktape engine without any external dependency. It comes with a bunch of common transpilers built-in for convenience.
Bug#963743: ITP: benten -- Language server for Common Workflow Language documents
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: benten Version : 2020.06.03 Upstream Author : Kaushik Ghose * URL : http://github.com/rabix/benten * License : Apache-2.0 Programming Lang: Python Description : Language server for Common Workflow Language documents Benten is written using Python3 and developed against VS Code. The language server component will work with any editor/IDE that offers language server support. Syntax highlighting is currently only available for the VS Code extension. The VS Code extension is written in Typescript. This package is a work which is part of COVID-19 hackathon[1]. The package will be team maintained (med-team). [1] https://lists.debian.org/debian-med/2020/06/msg00071.html
Bug#963480: ITP: duckpy -- A simple Python library for searching on DuckDuckGo
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: duckpy Version : 2.1.1 Upstream Author : Alisson Lauffe * URL : https://github.com/AmanoTeam/duckpy * License : Expat Programming Lang: Python Description : A simple Python library for searching on DuckDuckGo A simple Python module for searching on DuckDuckGo. And also provide an asynchronous version inside the duckpy.aio package. . Can also set up proxies and/or enable or disable random User-Agents depending on your needs. This package is a dependency of upcoming package Benton[1]. The package will be team maintained (med-team). [1] https://github.com/rabix/benten
Bug#963234: ITP: cwlformat -- opinionated code formatter for CWL
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: cwlformat Version : 2020.05.19 Upstream Author : Kaushik Ghose * URL : https://github.com/rabix/cwl-format * License : Apache-2.0 Programming Lang: Python Description : opinionated code formatter for CWL CWL Format is a specification and a reference implementation for a very opinionated CWL code formatter. . It outputs CWL in a standardized YAML format. It has no settings or options because you have better things to do with your time. And because CWL Format is always correct. This package is a dependency work which is part of COVID-19 hackathon [1]. The package will be team maintained (med-team). [1] https://lists.debian.org/debian-med/2020/06/msg00071.html
Bug#962942: ITP: seirsplus -- Models of SEIRS epidemic dynamics with extensions
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: seirsplus Version : 0.0~git20200528.5c04080 Upstream Author : Ryan Seamus McGee * URL : https://github.com/ryansmcgee/seirsplus * License : Expat Programming Lang: Python Description : Models of SEIRS epidemic dynamics with extensions This package implements generalized SEIRS infectious disease dynamics models with extensions that model the effect of factors including population structure, social distancing, testing, contact tracing, and quarantining detected cases. . Notably, this package includes stochastic implementations of these models on dynamic networks. This package is a work which is part of COVID-19 hackathon [1]. The package will be team maintained (med-team). [1] https://lists.debian.org/debian-med/2020/06/msg00071.html
Bug#961331: ITP: insilicoseq -- A sequencing simulator producing realistic illumina reads
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: insilicoseq Version : 1.4.6 Upstream Author : Hadrien Gourle * URL : http://github.com/HadrienG/InSilicoSeq * License : Expat Programming Lang: Python Description : A sequencing simulator producing realistic illumina reads Primarily intended for simulating metagenomic samples, it can also be used to produce sequencing data from a single genome. . InSilicoSeq is written in python, and use kernel density estimators to model the read quality of real sequencing data. . InSilicoSeq support substitution, insertion and deletion errors. If you don't have the use for insertion and deletion error a basic error model is provided. This package is a dependency of idseq-bench (#956033) and will be team-maintained with Debian Med Packaging Team.
Bug#961319: ITP: ncbi-acc-download -- Download genome files from NCBI by accession
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: ncbi-acc-download Version : 0.2.6 Upstream Author : Kai Blin * URL : https://github.com/kblin/ncbi-acc-download * License : Apache-2.0 Programming Lang: Python Description : Download genome files from NCBI by accession This package provides a script to download sequences from GenBank/RefSeq by accession through the NCBI ENTREZ API. This package is a dependency of idseq-bench (#956033) and will be team-maintained with Debian Med Packaging Team.
Bug#956455: ITP: smart-open -- utils for streaming large files
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: smart-open Version : 1.11.1 Upstream Author : Radim Rehurek * URL : https://github.com/piskvorky/smart_open * License : Expat Programming Lang: Python Description : utils for streaming large files smart-open is a library for efficient streaming of very large files from/to storages such as HDFS, WebHDFS, HTTP, HTTPS, SFTP, or local filesystem. It supports transparent, on-the-fly (de-)compression for a variety of different formats (gzip, bz2, etc.). This package is a dependency of idseq-bench (#956033)[0]. [0] https://bugs.debian.org/956033 This package is a work which is part of COVID-19 BioHackathon[1,2]. The package will be team maintained (med-team). [1] https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/Covid-19-hackathon [2] https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/COVID-19-Hackathon-packages-needing-work
Bug#956089: ITP: recan -- genetic distance plotting for recombination events analysis
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: recan Version : 0.1.2 Upstream Author : Yuriy Babin * URL : https://github.com/babinyurii/recan * License : Expat Programming Lang: Python Description : genetic distance plotting for recombination events analysis recan is a Python package which allows to construct genetic distance plots to explore and discover recombination events in viral genomes. . This method has been previously implemented in desktop software tools: RAT, Simplot and RDP4. This package is a work which is part of COVID-19 BioHackathon [1,2]. The package will be team maintained (med-team). [1] https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/Covid-19-hackathon [2] https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/COVID-19-Hackathon-packages-needing-work
Bug#956033: ITP: idseq-bench -- Benchmark generator for the IDseq Portal
Package: wnpp Severity: wishlist Owner: Sao I Kuan * Package name: idseq-bench Version : 0.0~git20191121.9623264 Upstream Author : Chan Zuckerberg Initiative * URL : https://github.com/chanzuckerberg/idseq-bench * License : Expat Programming Lang: Python Description : Benchmark generator for the IDseq Portal IDseq (Infectious Disease Sequencing Platform) is an unbiased global software platform that helps scientists identify pathogens in metagenomic sequencing data. . * Discover - Identify the pathogen landscape * Detect - Monitor and review potential outbreaks * Decipher - Find potential infecting organisms in large datasets . This package provides the benchmark generator for the IDseq Portal. This package is a work which is part of COVID-19 BioHackathon [1,2]. The package will be team maintained (med-team). [1] https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/Covid-19-hackathon [2] https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/COVID-19-Hackathon-packages-needing-work
