Re: Better Lintian checks

[Sascha Steinbiss]

Hi Bastien,

> Newer unstable Lintian version check now package testsuite for licence
> problems/missing source

Just FYI, the potential 'source-is-missing' false positive mentioned at
the beginning of #798900 [1] still exists, regarding the automatic
flagging of JS files with lines > 512 chars as minified although they
may not be.
The long line in question is also present in the source in my separately
packaged version of DataTables, which is built from upstream's source
repo exactly to address this borderline case.
See [2].

This just popped back on my radar since the recent rewording of the
lintian message broke my override ;)

Cheers
Sascha

[1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798900
[2] https://github.com/DataTables/DataTablesSrc/blob/master/js/DataTables.js


-- 
 The Wellcome Trust Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE. 

Accepted miniasm 0.2-1 (source amd64) into unstable, unstable

[Sascha Steinbiss]

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Format: 1.8
Date: Sun, 24 Jan 2016 12:06:20 +
Source: miniasm
Binary: miniasm
Architecture: source amd64
Version: 0.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 miniasm- ultrafast de novo assembler for long noisy DNA sequencing reads
Closes: 812426
Changes:
 miniasm (0.2-1) unstable; urgency=low
 .
   * Initial packaging (Closes: #812426)
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miniasm_0.2-1_amd64.deb
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miniasm_0.2.orig.tar.gz
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miniasm_0.2-1.debian.tar.xz
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miniasm-dbgsym_0.2-1_amd64.deb
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Accepted pbsim 1.0.3-1 (source amd64) into unstable, unstable

[Sascha Steinbiss]

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Format: 1.8
Date: Sun, 24 Jan 2016 12:14:09 +
Source: pbsim
Binary: pbsim
Architecture: source amd64
Version: 1.0.3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 pbsim  - simulator for PacBio sequencing reads
Closes: 812526
Changes:
 pbsim (1.0.3-1) unstable; urgency=low
 .
   * Initial release (Closes: #812526)
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pbsim_1.0.3-1.debian.tar.xz
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Bug#812526: ITP: pbsim -- simulator for PacBio sequencing reads

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>

* Package name: pbsim
  Version : 1.0.3
  Upstream Author : Michiaki Hamada <mham...@k.u-tokyo.ac.jp>
* URL : https://code.google.com/p/pbsim/
* License : GPL-2
  Programming Lang: C++
  Description : simulator for PacBio sequencing reads

PacBio DNA sequencers produce two types of characteristic reads: CCS
(short and low error rate) and CLR (long and high error rate), both of
which could be useful for de novo assembly of genomes. PBSIM simulates
those PacBio reads from a reference sequence by using either a model-based
or sampling-based simulation. Simulated reads are useful, for example, when
developing or evaluating sequence assemblers targeted at PacBio data.

This package will be maintained by the Debian Med Packaging Team.

Bug#812426: ITP: miniasm -- ultrafast de novo assembler for long noisy DNA sequencing reads

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>

* Package name: miniasm
  Version : 0.2
  Upstream Author : Heng Li <l...@me.com>
* URL : https://github.com/lh3/miniasm
* License : MIT
  Programming Lang: C
  Description : ultrafast de novo assembler for long noisy DNA sequencing 
reads

Miniasm is an experimental very fast OLC-based de novo sequence assembler
for noisy long reads. It takes all-vs-all read self-mappings (typically by
minimap) as input and outputs an assembly graph in the GFA format.
Different from mainstream assemblers, miniasm does not have a consensus step.
It simply concatenates pieces of read sequences to generate the final unitig
sequences. Thus the per-base error rate is similar to the raw input reads.

This software will be maintained by the Debian Med Packaging team.

Accepted minimap 0.2-1 (source amd64) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 10 Jan 2016 11:34:09 +
Source: minimap
Binary: minimap libminimap0 libminimap-dev
Architecture: source amd64
Version: 0.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libminimap-dev - development headers for libminimap
 libminimap0 - library for approximate mapping of long biosequences
 minimap- tool for approximate mapping of long biosequences such as DNA rea
Closes: 810600
Changes:
 minimap (0.2-1) unstable; urgency=low
 .
   * Initial packaging (Closes: #810600)
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Accepted minimap 0.2-2 (source amd64) into unstable

[Sascha Steinbiss]

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Hash: SHA256

Format: 1.8
Date: Wed, 13 Jan 2016 22:18:46 +
Source: minimap
Binary: minimap libminimap0 libminimap-dev
Architecture: source amd64
Version: 0.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libminimap-dev - development headers for libminimap
 libminimap0 - library for approximate mapping of long biosequences
 minimap- tool for approximate mapping of long biosequences such as DNA rea
Changes:
 minimap (0.2-2) unstable; urgency=medium
 .
   * Fix building on 32-bit archs.
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Bug#810600: ITP: minimap -- tool to find approximate mapping positions between long sequences

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>

* Package name: minimap
  Version : 0.2 
  Upstream Author : Heng Li <l...@me.com>
* URL : https://github.com/lh3/minimap
* License : MIT
  Programming Lang: C
  Description : tool to find approximate mapping positions between long 
sequences

Minimap is an experimental tool to efficiently find multiple approximate
mapping positions between two sets of long sequences, such as between
reads and reference genomes, between genomes and between long noisy reads.
Minimap does not generate alignments as of now and because of this, it is
usually tens of times faster than mainstream aligners. 
It does not replace mainstream aligners, but it can be useful to simply
and quickly identify long approximate matches at moderate divergence among
a huge collection of sequences. For this task, it is much faster than most
existing tools.

This software will be maintained by the Debian Med Packaging team.

Accepted aegean 0.15.1+dfsg-1 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 09 Jan 2016 14:16:31 +
Source: aegean
Binary: aegean aegean-dbg
Architecture: source amd64
Version: 0.15.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 aegean - integrated genome analysis toolkit
 aegean-dbg - integrated genome analysis toolkit, with debug symbols
Changes:
 aegean (0.15.1+dfsg-1) unstable; urgency=medium
 .
   * New upstream release.
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Accepted aegean 0.15.1+dfsg-2 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 09 Jan 2016 18:28:59 +
Source: aegean
Binary: aegean aegean-dbg
Architecture: source amd64
Version: 0.15.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 aegean - integrated genome analysis toolkit
 aegean-dbg - integrated genome analysis toolkit, with debug symbols
Changes:
 aegean (0.15.1+dfsg-2) unstable; urgency=medium
 .
   * Remove broken archs, as revealed by newly added tests.
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Accepted genometools 1.5.8-1 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 07 Jan 2016 22:18:31 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.8-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.8-1) unstable; urgency=medium
 .
   * New upstream release.
   * Ensure that /usr/share/genometools/* is complete.
   * Fix spelling.
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Accepted fastaq 3.11.1-1 (source all) into unstable

[Sascha Steinbiss]

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Hash: SHA256

Format: 1.8
Date: Tue, 05 Jan 2016 10:14:37 +
Source: fastaq
Binary: fastaq
Architecture: source all
Version: 3.11.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 fastaq - FASTA and FASTQ file manipulation tools
Changes:
 fastaq (3.11.1-1) unstable; urgency=medium
 .
   * New upstream version.
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Accepted kmc 2.3+dfsg-1 (source amd64) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 19 Dec 2015 14:51:54 +
Source: kmc
Binary: kmc libkmc-dev
Architecture: source amd64
Version: 2.3+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 kmc- count kmers in genomic sequences
 libkmc-dev - library to access KMC k-mer count files
Changes:
 kmc (2.3+dfsg-1) unstable; urgency=medium
 .
   [ Kevin Murray ]
   * Add libkmc-dev package
 .
   [ Sascha Steinbiss ]
   * New upstream release
   * Incorporate new 'kmc_tools' executable and manpages
   * Add autopkgtest
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libkmc-dev_2.3+dfsg-1_amd64.deb
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 f8f060d855f70274d6422b62e2617bae 129398 science optional 
kmc_2.3+dfsg.orig.tar.gz
 7f9ae3c968b3a98828131563beaa44ac 30816 science optional 
kmc_2.3+dfsg-1.debian.tar.xz
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kmc-dbgsym_2.3+dfsg-1_amd64.deb
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kmc_2.3+dfsg-1_amd64.deb
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libkmc-dev_2.3+dfsg-1_amd64.deb

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Accepted libtabixpp 1.0.0-2 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 22 Dec 2015 06:19:31 +
Source: libtabixpp
Binary: libtabixpp0 libtabixpp-dev libtabixpp0-dbg
Architecture: source amd64
Version: 1.0.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libtabixpp-dev - C++ wrapper to tabix indexer (development files)
 libtabixpp0 - C++ wrapper to tabix indexer
 libtabixpp0-dbg - C++ wrapper to tabix indexer (debug symbols)
Changes:
 libtabixpp (1.0.0-2) unstable; urgency=medium
 .
   * d/tests/control: depend on unversioned dev package
 This fixes a failing autopkgtest.
   * d/control: add some dev dependencies
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libtabixpp-dev_1.0.0-2_amd64.deb
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libtabixpp0-dbg_1.0.0-2_amd64.deb
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libtabixpp0_1.0.0-2_amd64.deb

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Bug#808495: ITP: roary -- high speed stand alone pan genome pipeline

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>

* Package name: roary
  Version : 3.5.7
  Upstream Author : Andrew J. Page <ro...@sanger.ac.uk>
* URL : http://sanger-pathogens.github.io/Roary/
* License : GPL-3+
  Programming Lang: Perl
  Description : high speed stand alone pan genome pipeline

Roary is a high speed stand alone pan genome pipeline, which takes annotated
assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates
the pan genome. Using a standard desktop PC, it can analyse datasets with
thousands of samples, something which is computationally infeasible with
existing methods, without compromising the quality of the results. 128 samples
can be analysed in under 1 hour using 1 GB of RAM and a single processor.
To perform this analysis using existing methods would take weeks and hundreds
of GB of RAM. Roary is not intended for meta-genomics or for comparing
extremely diverse sets of genomes.

This package will be maintained under the umbrella of the Debian Med
Packaging Team.

Accepted libfile-grep-perl 0.02-1 (source all) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 19 Dec 2015 16:35:21 +
Source: libfile-grep-perl
Binary: libfile-grep-perl
Architecture: source all
Version: 0.02-1
Distribution: unstable
Urgency: low
Maintainer: Debian Perl Group <pkg-perl-maintain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libfile-grep-perl - module for pattern matching in a series of files
Closes: 808351
Changes:
 libfile-grep-perl (0.02-1) unstable; urgency=low
 .
   * Initial Release (Closes: #808351).
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libfile-grep-perl_0.02-1_all.deb
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libfile-grep-perl_0.02-1.debian.tar.xz
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libfile-grep-perl_0.02-1_all.deb

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Accepted libtest-files-perl 0.14-1 (source all) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 19 Dec 2015 16:36:35 +
Source: libtest-files-perl
Binary: libtest-files-perl
Architecture: source all
Version: 0.14-1
Distribution: unstable
Urgency: low
Maintainer: Debian Perl Group <pkg-perl-maintain...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libtest-files-perl - module to ease testing with files and directories
Closes: 808350
Changes:
 libtest-files-perl (0.14-1) unstable; urgency=low
 .
   * Initial Release (Closes: #808350).
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Accepted libtabixpp 1.0.0-1 (source amd64) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 15 Dec 2015 00:12:12 +
Source: libtabixpp
Binary: libtabixpp0 libtabixpp-dev libtabixpp0-dbg
Architecture: source amd64
Version: 1.0.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libtabixpp-dev - C++ wrapper to tabix indexer (development files)
 libtabixpp0 - C++ wrapper to tabix indexer
 libtabixpp0-dbg - C++ wrapper to tabix indexer (debug symbols)
Closes: 807977
Changes:
 libtabixpp (1.0.0-1) unstable; urgency=low
 .
   * Initial release (Closes: #807977)
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Bug#808350: ITP: libtest-files-perl -- Test::Builder based module to ease testing with files and dirs

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>

* Package name: libtest-files-perl
  Version : 0.14 
  Upstream Author : Phil Crow <philcrow2...@yahoo.com>
* URL : https://metacpan.org/release/Test-Files
* License : Artistic or GPL-1+
  Programming Lang: Perl
  Description : Test::Builder based module to ease testing with files and 
dirs

This is a Test::Builder based module to ease testing with files and
directories, e.g. compare the contents of a file to a string, compare the
contents of two files, check a directory for the presence of a list of files,
compare all text files in two directories reporting any differences, etc.

This package will be maintained under the umbrella of the Debian Perl Group.

Bug#808351: ITP: libfile-grep-perl -- find matches to a pattern in a series of files and related functions

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>

* Package name: libfile-grep-perl
  Version : 0.02
  Upstream Author : Michael K. Neylon <mneylon...@masemware.com> 
* URL : https://metacpan.org/release/File-Grep
* License : Artistic or GPL-1+
  Programming Lang: Perl
  Description : find matches to a pattern in a series of files and related 
functions

File::Grep provides similar functionality as perl's builtin grep, map,
and foreach commands, but iterating over a passed filelist instead of
arrays.  While trivial, this module can provide a quick dropin when
such functionality is needed.

This package will be maintained under the umbrella of the Debian Perl Group.

Accepted snp-sites 2.1.1-1 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 15 Dec 2015 22:21:56 +
Source: snp-sites
Binary: snp-sites libsnp-sites1 libsnp-sites1-dev
Architecture: source amd64
Version: 2.1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libsnp-sites1 - Shared libraries of the package snp-sites
 libsnp-sites1-dev - Static libraries and header files for the package snp-sites
 snp-sites  - Binary code for the package snp-sites
Changes:
 snp-sites (2.1.1-1) unstable; urgency=medium
 .
   * New upstream release
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snp-sites_2.1.1-1_amd64.deb
Files:
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snp-sites_2.1.1.orig.tar.gz
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snp-sites_2.1.1-1.debian.tar.xz
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libsnp-sites1-dev_2.1.1-1_amd64.deb
 c567cc0a8971f09b892938b04f0dc0df 10258 libs optional 
libsnp-sites1_2.1.1-1_amd64.deb
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snp-sites_2.1.1-1_amd64.deb

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Bug#807977: ITP: libtabixpp -- C++ wrapper to tabix indexer

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>

* Package name: libtabixpp
  Version : 1.0.0 
  Upstream Author : Erik Garrison <erik.garri...@gmail.com>
* URL : https://github.com/ekg/tabixpp
* License : MIT
  Programming Lang: C++
  Description : C++ wrapper to tabix indexer

Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip. After indexing, tabix is able to quickly 
retrieve data lines by chromosomal coordinates.
This package provides a C++ wrapper to the tabix indexer.

This is packaged as a dependency for REAPR and will be maintained the Debian
Med packaging team.

Accepted genometools 1.5.7-7 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 12 Dec 2015 19:13:40 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.7-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.7-7) unstable; urgency=medium
 .
   * build API documentation reproducibly
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genometools-dbg_1.5.7-7_amd64.deb
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genometools_1.5.7-7_amd64.deb
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libgenometools0-dev_1.5.7-7_amd64.deb
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libgenometools0_1.5.7-7_amd64.deb
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python-genometools_1.5.7-7_all.deb

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Accepted ltrsift 1.0.2-5 (source amd64 all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 12 Dec 2015 09:38:35 +
Source: ltrsift
Binary: ltrsift ltrsift-dbg ltrsift-examples
Architecture: source amd64 all
Version: 1.0.2-5
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 ltrsift- postprocessing and classification of LTR retrotransposons
 ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d
 ltrsift-examples - example data for LTRsift
Changes:
 ltrsift (1.0.2-5) unstable; urgency=low
 .
   * use deterministic file order for build
   * fix Metadata-Screenshots
   * fix build on x32
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Bug#807779: ITP: snpomatic -- fast, stringent short-read mapping software

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>

* Package name: snpomatic
  Version : 0.0.20151015 
  Upstream Author : Heinrich Magnus Manske <m...@sanger.ac.uk>
* URL : https://github.com/magnusmanske/snpomatic
* License : GPL-3+
  Programming Lang: C++
  Description : fast, stringent short-read mapping software

High throughput sequencing technologies generate large amounts of short reads.
Mapping these to a reference sequence consumes large amounts of processing
time and memory, and read mapping errors can lead to noisy or incorrect
alignments.
SNP-o-matic is a fast, stringent short-read mapping software. It supports a
multitude of output types and formats, for uses in filtering reads, alignments,
sequence-based genotyping calls, assisted reassembly of contigs etc.

This package, maintained by the Debian Med Packaging Team, is a dependency for
REAPR.

Accepted genometools 1.5.7-6 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 09 Dec 2015 22:20:47 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.7-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.7-6) unstable; urgency=medium
 .
   * Reintroduce mips64el which was removed my mistake.
   * Fix detection of x32 build
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python-genometools_1.5.7-6_all.deb
Files:
 7a4ccba9231cf15eeaf97e1e0ee79bc7 3470 science optional genometools_1.5.7-6.dsc
 72e570a4dea08c6c7ba3189d52550d36 17256 science optional 
genometools_1.5.7-6.debian.tar.xz
 536034c548b082bce9a944b7558a537a 143754 science optional 
genometools-common_1.5.7-6_all.deb
 6504d6fec0afe8ef643cddd458b8da19 4158182 debug extra 
genometools-dbg_1.5.7-6_amd64.deb
 ad448a7ec094e6d7858ae770b8418383 2672990 doc optional 
genometools-doc_1.5.7-6_all.deb
 fc6bd2425a4b3ecd7cf28104f22205b9 1837078 science optional 
genometools_1.5.7-6_amd64.deb
 f95a1889f090e79262c29fdfe5f10ca6 77406 libdevel optional 
libgenometools0-dev_1.5.7-6_amd64.deb
 e368f263a9fed85cda543e5d87bdeff1 1730810 libs optional 
libgenometools0_1.5.7-6_amd64.deb
 453ba59b91e80e675b66d5d9fc0270fb 30866 python optional 
python-genometools_1.5.7-6_all.deb

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Accepted codonw 1.4.4-2 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 07 Dec 2015 22:51:58 +
Source: codonw
Binary: codonw
Architecture: source amd64
Version: 1.4.4-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 codonw - Correspondence Analysis of Codon Usage
Changes:
 codonw (1.4.4-2) unstable; urgency=medium
 .
   * Remove nondeterminism
 - menu.c: Do not print compilation date and time
Checksums-Sha1:
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Checksums-Sha256:
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codonw_1.4.4-2.dsc
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codonw_1.4.4-2.debian.tar.xz
 b6bc458de6d98d493c1414d4df1c1d3dc51b7aeddaac7da59663b64435ecd19c 88076 
codonw_1.4.4-2_amd64.deb
Files:
 922710c939fd5f162029b718ef6002cd 1898 science optional codonw_1.4.4-2.dsc
 ae1537344b6e7d163c0a9955f54f2cd2 9644 science optional 
codonw_1.4.4-2.debian.tar.xz
 f99d3d96bf1ac2c6384a87c52880bbd5 88076 science optional 
codonw_1.4.4-2_amd64.deb

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Accepted genometools 1.5.7-5 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 08 Dec 2015 00:42:49 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.7-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.7-5) unstable; urgency=medium
 .
   * Try to load correct renamed .so file in Python bindings
   * Refresh patches
   * Use DEB_TARGET_ARCH to determine build archs
Checksums-Sha1:
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genometools_1.5.7-5.debian.tar.xz
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genometools-common_1.5.7-5_all.deb
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genometools-dbg_1.5.7-5_amd64.deb
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genometools-doc_1.5.7-5_all.deb
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libgenometools0_1.5.7-5_amd64.deb
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python-genometools_1.5.7-5_all.deb
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genometools_1.5.7-5.dsc
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genometools_1.5.7-5.debian.tar.xz
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genometools-common_1.5.7-5_all.deb
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genometools_1.5.7-5_amd64.deb
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libgenometools0-dev_1.5.7-5_amd64.deb
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libgenometools0_1.5.7-5_amd64.deb
 90b463abff2742a50b4d2210a191d827496d6c3e180837ade972b409fd142083 30786 
python-genometools_1.5.7-5_all.deb
Files:
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 45f93bc3f10447a5abe6d05cc4e5ac08 17216 science optional 
genometools_1.5.7-5.debian.tar.xz
 51072a7d2bcf0991d9d85e192006b18c 143644 science optional 
genometools-common_1.5.7-5_all.deb
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genometools-dbg_1.5.7-5_amd64.deb
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genometools-doc_1.5.7-5_all.deb
 1933fecaeeb4fff9418767747efa3f51 1836860 science optional 
genometools_1.5.7-5_amd64.deb
 fc40579fb8bf65e1f8e1acc2f232c0bb 77316 libdevel optional 
libgenometools0-dev_1.5.7-5_amd64.deb
 0253922247797e634453ef328ee5a254 1730586 libs optional 
libgenometools0_1.5.7-5_amd64.deb
 b43f44edc7888526c2ba42935c3ca53c 30786 python optional 
python-genometools_1.5.7-5_all.deb

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Accepted codonw 1.4.4-1 (source amd64) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 20 Nov 2015 21:24:47 +
Source: codonw
Binary: codonw
Architecture: source amd64
Version: 1.4.4-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 codonw - Correspondence Analysis of Codon Usage
Closes: 805693
Changes:
 codonw (1.4.4-1) unstable; urgency=low
 .
   * Initial release (Closes: #805693)
Checksums-Sha1:
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codonw_1.4.4.orig.tar.gz
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codonw_1.4.4-1.debian.tar.xz
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codonw_1.4.4-1_amd64.deb
Files:
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 e8178e830b52e44b43f2c709cf838abb 155815 science optional 
codonw_1.4.4.orig.tar.gz
 f0d179598526607c66f8c8023b47b0df 9320 science optional 
codonw_1.4.4-1.debian.tar.xz
 abaafa6e217858d9b7a2bf47ed90f8b2 88096 science optional 
codonw_1.4.4-1_amd64.deb

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Accepted snp-sites 2.1.0-2 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 04 Dec 2015 09:23:55 +
Source: snp-sites
Binary: snp-sites libsnp-sites1 libsnp-sites1-dev
Architecture: source amd64
Version: 2.1.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libsnp-sites1 - Shared libraries of the package snp-sites
 libsnp-sites1-dev - Static libraries and header files for the package snp-sites
 snp-sites  - Binary code for the package snp-sites
Changes:
 snp-sites (2.1.0-2) unstable; urgency=medium
 .
   * Allow building on kfreebsd archs
Checksums-Sha1:
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libsnp-sites1-dev_2.1.0-2_amd64.deb
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Checksums-Sha256:
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snp-sites_2.1.0-2.dsc
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snp-sites_2.1.0-2.debian.tar.xz
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libsnp-sites1-dev_2.1.0-2_amd64.deb
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libsnp-sites1_2.1.0-2_amd64.deb
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snp-sites_2.1.0-2_amd64.deb
Files:
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 ebe663561586b811b79b18e8d87b892a 7932 science optional 
snp-sites_2.1.0-2.debian.tar.xz
 8b50c47005d192fb415dcf2da3c6797e 13530 libdevel optional 
libsnp-sites1-dev_2.1.0-2_amd64.deb
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libsnp-sites1_2.1.0-2_amd64.deb
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snp-sites_2.1.0-2_amd64.deb

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Accepted genometools 1.5.7-4 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 04 Dec 2015 22:18:11 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.7-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.7-4) unstable; urgency=medium
 .
   * Fix builds on less popular platforms
 - Check if faketime works
 - Do no use -m32/-m64 on x32
   * Improve reproducibility
 - sort files to compile by name
   * Add autopkgtests
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Files:
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 26ec4772c256fd983d15de1b7e799ba7 16956 science optional 
genometools_1.5.7-4.debian.tar.xz
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genometools-common_1.5.7-4_all.deb
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genometools-dbg_1.5.7-4_amd64.deb
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genometools-doc_1.5.7-4_all.deb
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genometools_1.5.7-4_amd64.deb
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libgenometools0-dev_1.5.7-4_amd64.deb
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libgenometools0_1.5.7-4_amd64.deb
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Accepted snp-sites 2.1.0-1 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 03 Dec 2015 21:40:00 +
Source: snp-sites
Binary: snp-sites libsnp-sites1 libsnp-sites1-dev
Architecture: source amd64
Version: 2.1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libsnp-sites1 - Shared libraries of the package snp-sites
 libsnp-sites1-dev - Static libraries and header files for the package snp-sites
 snp-sites  - Binary code for the package snp-sites
Changes:
 snp-sites (2.1.0-1) unstable; urgency=medium
 .
   * New upstream release
   * Add simple autopkgtest
Checksums-Sha1:
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snp-sites_2.1.0.orig.tar.gz
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libsnp-sites1-dev_2.1.0-1_amd64.deb
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snp-sites_2.1.0-1_amd64.deb
Files:
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snp-sites_2.1.0.orig.tar.gz
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snp-sites_2.1.0-1.debian.tar.xz
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libsnp-sites1-dev_2.1.0-1_amd64.deb
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libsnp-sites1_2.1.0-1_amd64.deb
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snp-sites_2.1.0-1_amd64.deb

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Accepted aragorn 1.2.36-5 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 01 Dec 2015 23:32:50 +
Source: aragorn
Binary: aragorn
Architecture: source amd64
Version: 1.2.36-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 aragorn- tRNA and tmRNA detection in nucleotide sequences
Changes:
 aragorn (1.2.36-5) unstable; urgency=medium
 .
   * Fix freeze with -O2/3.
   * Add simple autopkgtest.
   * Bump standards version.
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aragorn_1.2.36-5.debian.tar.xz
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aragorn_1.2.36-5_amd64.deb

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Accepted fastaq 3.11.0-1 (source all) into unstable

[Sascha Steinbiss]

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Hash: SHA256

Format: 1.8
Date: Mon, 30 Nov 2015 19:06:54 +
Source: fastaq
Binary: fastaq
Architecture: source all
Version: 3.11.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 fastaq - FASTA and FASTQ file manipulation tools
Changes:
 fastaq (3.11.0-1) unstable; urgency=medium
 .
   * New upstream version.
   * Add basic autopkgtests.
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fastaq_3.11.0-1.debian.tar.xz
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Accepted aegean 0.14.1+dfsg2-2 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 29 Nov 2015 19:19:01 +
Source: aegean
Binary: aegean aegean-dbg
Architecture: source amd64
Version: 0.14.1+dfsg2-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 aegean - integrated genome analysis toolkit
 aegean-dbg - integrated genome analysis toolkit, with debug symbols
Changes:
 aegean (0.14.1+dfsg2-2) unstable; urgency=low
 .
   * d/rules: build w/o parallelism, set LC_ALL
   * patch Makefile to remove nondeterminism
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aegean_0.14.1+dfsg2-2.dsc
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aegean_0.14.1+dfsg2-2_amd64.deb

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Accepted datatables.js 1.10.10+dfsg-1 (source all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 28 Nov 2015 12:11:01 +
Source: datatables.js
Binary: libjs-jquery-datatables
Architecture: source all
Version: 1.10.10+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libjs-jquery-datatables - jQuery plug-in that makes nice tables from different 
data sources
Changes:
 datatables.js (1.10.10+dfsg-1) unstable; urgency=medium
 .
   * New upstream release.
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datatables.js_1.10.10+dfsg.orig.tar.gz
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datatables.js_1.10.10+dfsg-1.debian.tar.xz
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libjs-jquery-datatables_1.10.10+dfsg-1_all.deb
Checksums-Sha256:
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datatables.js_1.10.10+dfsg-1.debian.tar.xz
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libjs-jquery-datatables_1.10.10+dfsg-1_all.deb
Files:
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datatables.js_1.10.10+dfsg-1.dsc
 f9be15550be5a8ea552cac5085b3290b 418466 web optional 
datatables.js_1.10.10+dfsg.orig.tar.gz
 54929bdaac41a3a232ea1f36be06a1aa 4300 web optional 
datatables.js_1.10.10+dfsg-1.debian.tar.xz
 0f60915630f73d0e71d657373f74ed5c 129900 web optional 
libjs-jquery-datatables_1.10.10+dfsg-1_all.deb

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Accepted snp-sites 2.0.2-2 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 29 Nov 2015 01:58:03 +
Source: snp-sites
Binary: snp-sites libsnp-sites1 libsnp-sites1-dev
Architecture: source amd64
Version: 2.0.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libsnp-sites1 - Shared libraries of the package snp-sites
 libsnp-sites1-dev - Static libraries and header files for the package snp-sites
 snp-sites  - Binary code for the package snp-sites
Closes: 806568
Changes:
 snp-sites (2.0.2-2) unstable; urgency=medium
 .
   * Make build reproducible
 Closes: #806568
 Thanks to Reiner Herrmann for the patch
   * Cosmetics in man page
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snp-sites_2.0.2-2.dsc
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snp-sites_2.0.2-2.debian.tar.xz
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libsnp-sites1-dev_2.0.2-2_amd64.deb
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libsnp-sites1_2.0.2-2_amd64.deb
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snp-sites_2.0.2-2_amd64.deb
Files:
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 d8fcd797d201bc034d0f37c10c123cab 4384 science optional 
snp-sites_2.0.2-2.debian.tar.xz
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libsnp-sites1-dev_2.0.2-2_amd64.deb
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libsnp-sites1_2.0.2-2_amd64.deb
 ac570f8f00c2fbffac7264fa70157f46 7272 science optional 
snp-sites_2.0.2-2_amd64.deb

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Accepted datatables.js 1.10.9+dfsg-1 (source all) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 13 Oct 2015 14:46:54 +0200
Source: datatables.js
Binary: libjs-jquery-datatables
Architecture: source all
Version: 1.10.9+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 libjs-jquery-datatables - jQuery plug-in that makes nice tables from different 
data sources
Closes: 719601
Changes:
 datatables.js (1.10.9+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #719601)
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datatables.js_1.10.9+dfsg-1.debian.tar.xz
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libjs-jquery-datatables_1.10.9+dfsg-1_all.deb
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datatables.js_1.10.9+dfsg-1.debian.tar.xz
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libjs-jquery-datatables_1.10.9+dfsg-1_all.deb
Files:
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datatables.js_1.10.9+dfsg-1.dsc
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datatables.js_1.10.9+dfsg.orig.tar.gz
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datatables.js_1.10.9+dfsg-1.debian.tar.xz
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libjs-jquery-datatables_1.10.9+dfsg-1_all.deb

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Accepted aegean 0.14.1+dfsg2-1 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 27 Nov 2015 22:35:59 +
Source: aegean
Binary: aegean aegean-dbg
Architecture: source amd64
Version: 0.14.1+dfsg2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 aegean - integrated genome analysis toolkit
 aegean-dbg - integrated genome analysis toolkit, with debug symbols
Closes: 798900
Changes:
 aegean (0.14.1+dfsg2-1) unstable; urgency=medium
 .
   * Exclude DataTables JS source, add Depends to new package
 Closes: #798900
   * Remove now redundant Lintian override
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aegean-dbg_0.14.1+dfsg2-1_amd64.deb
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aegean_0.14.1+dfsg2-1_amd64.deb

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Bug#805693: ITP: codonw -- Correspondence Analysis of Codon Usage

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>

* Package name: codonw
  Version : 1.4.4
  Upstream Author : John Peden <jfp%23hanson-cod...@yahoo.com>
* URL : http://codonw.sourceforge.net
* License : GPL2
  Programming Lang: C
  Description : Correspondence Analysis of Codon Usage

CodonW is a package for codon usage analysis. It was designed to simplify
Multivariate Analysis (MVA) of codon usage. The MVA method employed in 
CodonW is correspondence analysis (COA) (the most popular MVA method for
codon usage analysis). CodonW can generate a COA for codon usage, relative
synonymous codon usage or amino acid usage. Additional analyses of codon
usage include investigation of optimal codons, codon and dinucleotide bias,
and/or base composition. CodonW analyses sequences encoded by genetic codes
other than the universal code.

This package will be maintained in the Debian Med Packaging Team.

Accepted fastaq 3.10.1-1 (source all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 16 Nov 2015 19:18:31 +
Source: fastaq
Binary: fastaq
Architecture: source all
Version: 3.10.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 fastaq - FASTA and FASTQ file manipulation tools
Changes:
 fastaq (3.10.1-1) unstable; urgency=medium
 .
   * New upstream version.
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fastaq_3.10.1.orig.tar.gz
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Accepted genometools 1.5.7-3 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 09 Nov 2015 19:15:29 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.7-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Closes: 804576
Changes:
 genometools (1.5.7-3) unstable; urgency=low
 .
   * d/control: remove obsolete dependency on libncurses5
 Closes: #804576
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genometools-common_1.5.7-3_all.deb
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genometools-dbg_1.5.7-3_amd64.deb
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Accepted ltrsift 1.0.2-4 (source amd64 all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 17 Oct 2015 15:24:49 +
Source: ltrsift
Binary: ltrsift ltrsift-dbg ltrsift-examples
Architecture: source amd64 all
Version: 1.0.2-4
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 ltrsift- postprocessing and classification of LTR retrotransposons
 ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d
 ltrsift-examples - example data for LTRsift
Changes:
 ltrsift (1.0.2-4) unstable; urgency=low
 .
   * remove menu file
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Accepted fastaq 3.10.0-1 (source all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 16 Oct 2015 20:26:19 +
Source: fastaq
Binary: fastaq
Architecture: source all
Version: 3.10.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 fastaq - FASTA and FASTQ file manipulation tools
Changes:
 fastaq (3.10.0-1) unstable; urgency=medium
 .
   * New upstream version.
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Accepted fastaq 3.9.0-1 (source all) into unstable

[Sascha Steinbiss]

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Hash: SHA256

Format: 1.8
Date: Wed, 14 Oct 2015 19:32:33 +
Source: fastaq
Binary: fastaq
Architecture: source all
Version: 3.9.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 fastaq - FASTA and FASTQ file manipulation tools
Changes:
 fastaq (3.9.0-1) unstable; urgency=medium
 .
   * New upstream version.
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Accepted aegean 0.14.1+dfsg-1 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 10 Oct 2015 09:43:34 +
Source: aegean
Binary: aegean aegean-dbg
Architecture: source amd64
Version: 0.14.1+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 aegean - integrated genome analysis toolkit
 aegean-dbg - integrated genome analysis toolkit, with debug symbols
Changes:
 aegean (0.14.1+dfsg-1) unstable; urgency=low
 .
   * New upstream release.
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aegean_0.14.1+dfsg.orig.tar.xz
 f64f039e14d0b43bf2fa1fd8aececd38 62740 science optional 
aegean_0.14.1+dfsg-1.debian.tar.xz
 6526a9e245ba2c2e4a11e45b079b7b6a 1032796 debug extra 
aegean-dbg_0.14.1+dfsg-1_amd64.deb
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aegean_0.14.1+dfsg-1_amd64.deb

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Accepted genometools 1.5.7-2 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 10 Oct 2015 12:04:37 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.7-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.7-2) unstable; urgency=low
 .
   * disable parallel building
Checksums-Sha1:
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genometools_1.5.7-2.debian.tar.xz
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genometools-common_1.5.7-2_all.deb
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genometools-dbg_1.5.7-2_amd64.deb
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genometools-doc_1.5.7-2_all.deb
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libgenometools0-dev_1.5.7-2_amd64.deb
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libgenometools0_1.5.7-2_amd64.deb
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python-genometools_1.5.7-2_amd64.deb
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genometools_1.5.7-2.dsc
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genometools_1.5.7-2.debian.tar.xz
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genometools-common_1.5.7-2_all.deb
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genometools-dbg_1.5.7-2_amd64.deb
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genometools-doc_1.5.7-2_all.deb
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genometools_1.5.7-2_amd64.deb
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libgenometools0-dev_1.5.7-2_amd64.deb
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libgenometools0_1.5.7-2_amd64.deb
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python-genometools_1.5.7-2_amd64.deb
Files:
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genometools_1.5.7-2.debian.tar.xz
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genometools-common_1.5.7-2_all.deb
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genometools-dbg_1.5.7-2_amd64.deb
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genometools-doc_1.5.7-2_all.deb
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genometools_1.5.7-2_amd64.deb
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libgenometools0-dev_1.5.7-2_amd64.deb
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libgenometools0_1.5.7-2_amd64.deb
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python-genometools_1.5.7-2_amd64.deb

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Accepted fastaq 3.8.0-1 (source all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 26 Sep 2015 14:42:24 +
Source: fastaq
Binary: fastaq
Architecture: source all
Version: 3.8.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 fastaq - FASTA and FASTQ file manipulation tools
Changes:
 fastaq (3.8.0-1) unstable; urgency=medium
 .
   * New upstream version.
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fastaq_3.8.0-1_all.deb
Files:
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 ad59e9cdd8b12facafe56289270d127f 68946 science optional 
fastaq_3.8.0.orig.tar.gz
 3a7882bf1cdb24a7d3fcdd57cc30431b 6960 science optional 
fastaq_3.8.0-1.debian.tar.xz
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Accepted genometools 1.5.7-1 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 13 Sep 2015 08:22:39 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.7-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.7-1) unstable; urgency=low
 .
   * New upstream release.
   * d/rules: try ro improve reproducibility
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libgenometools0_1.5.7-1_amd64.deb
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python-genometools_1.5.7-1_amd64.deb
Files:
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genometools_1.5.7.orig.tar.gz
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genometools_1.5.7-1.debian.tar.xz
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genometools-common_1.5.7-1_all.deb
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genometools-dbg_1.5.7-1_amd64.deb
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genometools-doc_1.5.7-1_all.deb
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genometools_1.5.7-1_amd64.deb
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libgenometools0-dev_1.5.7-1_amd64.deb
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libgenometools0_1.5.7-1_amd64.deb
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Accepted fastaq 3.7.0-1 (source all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 09 Sep 2015 18:53:26 +
Source: fastaq
Binary: fastaq
Architecture: source all
Version: 3.7.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sas...@steinbiss.name>
Description:
 fastaq - FASTA and FASTQ file manipulation tools
Changes:
 fastaq (3.7.0-1) unstable; urgency=low
 .
   * New upstream version
Checksums-Sha1:
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fastaq_3.7.0-1_all.deb
Files:
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fastaq_3.7.0-1.debian.tar.xz
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Accepted mussort 0.3-6 (source all) into unstable

[Sascha Steinbiss]

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Date: Mon, 31 Aug 2015 20:39:41 +
Source: mussort
Binary: mussort
Architecture: source all
Version: 0.3-6
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss <sa...@tetrinetsucht.de>
Changed-By: Sascha Steinbiss <sa...@tetrinetsucht.de>
Description:
 mussort- simple tool that sorts a music collection
Changes:
 mussort (0.3-6) unstable; urgency=low
 .
   * d/control: fix VCS links
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Accepted kmc 2.2+dfsg-1 (source amd64) into unstable

[Sascha Steinbiss]

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Date: Sun, 23 Aug 2015 15:32:16 +
Source: kmc
Binary: kmc
Architecture: source amd64
Version: 2.2+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 kmc- count kmers in genomic sequences
Changes:
 kmc (2.2+dfsg-1) unstable; urgency=low
 .
   * New upstream release
   * d/watch: Adjusted to use actual upstream's github repo
   * Rework patches to fit new upstream build system
   * Add citation
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Bug#796265: ITP: tor-monitor -- GTK+ application to display Tor circuits and streams

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss sa...@tetrinetsucht.de

* Package name: tor-monitor
  Version : 0.1
  Upstream Author : Tails developers ta...@boum.org
* URL : http://git.tails.boum.org/alan/tor-monitor/
* License : GPL
  Programming Lang: Python
  Description : GTK+ application to display Tor circuits and streams

Tor-monitor is a GTK+ application to display Tor circuits and streams. It
allows the user to inspect the circuits the locally running Tor daemon has
built, along with some metadata for each node.

Accepted tantan 13-1 (source amd64) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Tue, 04 Aug 2015 23:24:50 +
Source: tantan
Binary: tantan
Architecture: source amd64
Version: 13-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 tantan - low complexity and tandem repeat masker for biosequences
Closes: 793907
Changes:
 tantan (13-1) unstable; urgency=low
 .
   * Initial release (Closes: #793907)
   * Add missing copyright holder in d/copyright
   * Fix machine readable license code
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Accepted barrnap 0.7+dfsg-1 (source all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Wed, 29 Jul 2015 18:05:14 +
Source: barrnap
Binary: barrnap
Architecture: source all
Version: 0.7+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 barrnap- rapid ribosomal RNA prediction
Changes:
 barrnap (0.7+dfsg-1) unstable; urgency=low
 .
   * New upstream release.
   * Remove Suggests: to non-existent barrnap=data-nonfree package
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Bug#793907: ITP: tantan -- low complexity and tandem repeat masker for biosequences

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss sa...@tetrinetsucht.de

* Package name: tantan
  Version : 13
  Upstream Author : Martin Frith tan...@cbrc.jp
* URL : http://www.cbrc.jp/tantan/
* License : GPL
  Programming Lang: C
  Description : low complexity and tandem repeat masker for biosequences

tantan is a tool to mask simple regions (low complexity and short-period tandem
repeats) in DNA, RNA, and protein sequences. The aim of tantan is to prevent
false predictions when searching for homologous regions between two sequences.
Simple repeats often align strongly to each other, causing false homology
predictions.

This tool is very useful in conjunction with fast aligners like LAST.
See http://www.ncbi.nlm.nih.gov/pubmed/25172925 for a good use case
example.

The tantan package will be maintained by the Debian Med Packaging Team.


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Accepted aegean 0.13.0+dfsg-1 (source amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Tue, 28 Jul 2015 08:50:09 +
Source: aegean
Binary: aegean aegean-dbg
Architecture: source amd64
Version: 0.13.0+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 aegean - integrated genome analysis toolkit
 aegean-dbg - integrated genome analysis toolkit, with debug symbols
Changes:
 aegean (0.13.0+dfsg-1) unstable; urgency=low
 .
   * New upstream release.
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Accepted barrnap 0.5+dfsg-1 (source all) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 31 Jan 2015 10:12:42 +
Source: barrnap
Binary: barrnap
Architecture: source all
Version: 0.5+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 barrnap- rapid ribosomal RNA prediction
Closes: 769641
Changes:
 barrnap (0.5+dfsg-1) unstable; urgency=low
 .
   * Initial release (Closes: #769641)
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barrnap_0.5+dfsg.orig.tar.xz
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barrnap_0.5+dfsg-1.debian.tar.xz
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Accepted aegean 0.10.2+dfsg-1 (source amd64) into unstable, unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 11 Nov 2014 11:14:11 +
Source: aegean
Binary: aegean aegean-dbg
Architecture: source amd64
Version: 0.10.2+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 aegean - integrated genome analysis toolkit
 aegean-dbg - integrated genome analysis toolkit, with debug symbols
Closes: 769162
Changes:
 aegean (0.10.2+dfsg-1) unstable; urgency=low
 .
   * Initial release (Closes: #769162)
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aegean_0.10.2+dfsg.orig.tar.xz
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aegean_0.10.2+dfsg-1.debian.tar.xz
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aegean_0.10.2+dfsg-1_amd64.deb
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aegean-dbg_0.10.2+dfsg-1_amd64.deb

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Accepted genometools 1.5.6-1 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Mon, 22 Jun 2015 19:26:35 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.6-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.6-1) unstable; urgency=low
 .
   * New upstream release.
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genometools_1.5.6-1_amd64.deb
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libgenometools0-dev_1.5.6-1_amd64.deb
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libgenometools0_1.5.6-1_amd64.deb
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Accepted genometools 1.5.5-2 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Wed, 10 Jun 2015 10:03:22 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.5-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.5-2) unstable; urgency=low
 .
   * Disable faketime on hurd-i386 to fix FTBFS on that arch.
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genometools-common_1.5.5-2_all.deb
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genometools-dbg_1.5.5-2_amd64.deb
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genometools-doc_1.5.5-2_all.deb
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genometools_1.5.5-2_amd64.deb
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libgenometools0-dev_1.5.5-2_amd64.deb
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libgenometools0_1.5.5-2_amd64.deb
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python-genometools_1.5.5-2_amd64.deb

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Accepted genometools 1.5.5-1 (source all amd64) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Sat, 06 Jun 2015 09:49:49 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source all amd64
Version: 1.5.5-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.5-1) unstable; urgency=low
 .
   * New upstream release.
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libgenometools0_1.5.5-1_amd64.deb
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python-genometools_1.5.5-1_amd64.deb
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python-genometools_1.5.5-1_amd64.deb
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 e9a6fa785f7bafb27ca498da9450597c 12824214 science optional 
genometools_1.5.5.orig.tar.gz
 c5c9b0c4df61b4090c5096c7b9f4b421 14568 science optional 
genometools_1.5.5-1.debian.tar.xz
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genometools-common_1.5.5-1_all.deb
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genometools-dbg_1.5.5-1_amd64.deb
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genometools-doc_1.5.5-1_all.deb
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genometools_1.5.5-1_amd64.deb
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libgenometools0-dev_1.5.5-1_amd64.deb
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libgenometools0_1.5.5-1_amd64.deb
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python-genometools_1.5.5-1_amd64.deb

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Bug#776710: ITP: barrnap-data-nonfree -- non-free pHMMs for barrnap

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss sa...@tetrinetsucht.de

* Package name: barrnap-data-nonfree
  Version : 0.5
  Upstream Author : Torsten Seemann torsten.seem...@monash.edu 
  URL : http://www.vicbioinformatics.com/software.barrnap.shtml
* License : SILVA
  Description : non-free pHMMs for barrnap

Profile Hidden Markov models (pHMMs) for use with Barrnap (BAsic Rapid
Ribosomal RNA Predictor), which are only free to use for academic users.
In particular, these are the 28S (euk) and 23S (arc, bac) rRNAs.

This package, suggested by the upcoming barrnap package, extends it to include
additional RNA models derived from data which is not freely available to all
users (academic only).


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Accepted genometools 1.5.4-1 (source amd64 all) into experimental

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 12 Dec 2014 12:06:42 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.4-1
Distribution: experimental
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.4-1) experimental; urgency=low
 .
   * New upstream release.
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python-genometools_1.5.4-1_amd64.deb
Files:
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genometools_1.5.4.orig.tar.gz
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genometools_1.5.4-1.debian.tar.xz
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genometools_1.5.4-1_amd64.deb
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genometools-common_1.5.4-1_all.deb
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libgenometools0_1.5.4-1_amd64.deb
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genometools-doc_1.5.4-1_all.deb
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genometools-dbg_1.5.4-1_amd64.deb
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python-genometools_1.5.4-1_amd64.deb

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Accepted ltrsift 1.0.2-2 (source amd64 all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 18 Nov 2014 19:36:18 +
Source: ltrsift
Binary: ltrsift ltrsift-dbg ltrsift-examples
Architecture: source amd64 all
Version: 1.0.2-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 ltrsift- postprocessing and classification of LTR retrotransposons
 ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d
 ltrsift-examples - example data for LTRsift
Changes:
 ltrsift (1.0.2-2) unstable; urgency=low
 .
   * fix FTBFS on 64bit archs
   * lintian cleanups
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ltrsift-dbg_1.0.2-2_amd64.deb
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Accepted ltrsift 1.0.2-3 (source amd64 all) into unstable

[Sascha Steinbiss]

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Hash: SHA256

Format: 1.8
Date: Tue, 18 Nov 2014 20:12:45 +
Source: ltrsift
Binary: ltrsift ltrsift-dbg ltrsift-examples
Architecture: source amd64 all
Version: 1.0.2-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 ltrsift- postprocessing and classification of LTR retrotransposons
 ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d
 ltrsift-examples - example data for LTRsift
Changes:
 ltrsift (1.0.2-3) unstable; urgency=low
 .
   * include patches
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ltrsift_1.0.2-3.debian.tar.xz
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ltrsift_1.0.2-3_amd64.deb
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ltrsift-dbg_1.0.2-3_amd64.deb
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Accepted mussort 0.3-5 (source all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Tue, 18 Nov 2014 19:47:07 +
Source: mussort
Binary: mussort
Architecture: source all
Version: 0.3-5
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de
Changed-By: Sascha Steinbiss sa...@tetrinetsucht.de
Description:
 mussort- simple tool that sorts a music collection
Changes:
 mussort (0.3-5) unstable; urgency=low
 .
   * d/control: VCS links, standards version
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Bug#769641: ITP: barrnap -- rapid ribosomal RNA prediction

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss sas...@steinbiss.name

* Package name: barrnap
  Version : 0.5 
  Upstream Author : Torsten Seemann torsten.seem...@monash.edu
* URL : http://www.vicbioinformatics.com/software.barrnap.shtml
* License : GPL
  Programming Lang: Perl
  Description : rapid ribosomal RNA prediction

Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of
ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea
(5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).
It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the
NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style.
Multithreading is supported and one can expect roughly linear speed-ups
with more CPUs.


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Bug#769162: ITP: aegean -- integrated genome analysis toolkit

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss sa...@tetrinetsucht.de

* Package name: aegean
  Version : 0.10.2 
  Upstream Author : Daniel Standage daniel.stand...@gmail.com
* URL : http://standage.github.io/AEGeAn/
* License : ISC
  Programming Lang: C
  Description : integrated genome analysis toolkit

The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome 
Annotations. The toolkit includes a variety of analysis programs, e.g. for
comparing distinct sets of gene structure annotations (ParsEval), computation
of gene loci (LocusPocus) and more. In particular, the ParsEval software tool 
is very fast and convenient and highly useful for bioinformaticians working 
on the task of genome annotation, allowing for easy evaluation of results
e.g. compared against a reference. The ParsEval publication was quickly marked 
as being highly accessed (http://www.biomedcentral.com/1471-2105/13/187),
confirming its usefulness for the bioinformatics community.


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Accepted genometools 1.5.3-2 (source amd64 all) into unstable

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Fri, 05 Sep 2014 14:23:31 +0100
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.3-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.3-2) unstable; urgency=low
 .
   * Reactivate missing patch.
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Accepted aragorn 1.2.36-3 (source amd64)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 16 Jul 2014 21:56:49 +0100
Source: aragorn
Binary: aragorn
Architecture: source amd64
Version: 1.2.36-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 aragorn- tRNA and tmRNA detection in nucleotide sequences
Changes:
 aragorn (1.2.36-3) unstable; urgency=low
 .
   * hardening-includes = use dpkg-buildflags instead
   * debian/control: Update vcs field
   * debian/control: Update standards version
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Accepted genometools 1.5.3-1 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 16 Jul 2014 20:32:19 +0100
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes:
 genometools (1.5.3-1) unstable; urgency=low
 .
   * New upstream release.
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genometools_1.5.3-1.dsc
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genometools_1.5.3.orig.tar.gz
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genometools_1.5.3-1.debian.tar.xz
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genometools_1.5.3-1_amd64.deb
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genometools_1.5.3-1_amd64.deb
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libgenometools0_1.5.3-1_amd64.deb
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libgenometools0-dev_1.5.3-1_amd64.deb
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genometools-doc_1.5.3-1_all.deb
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genometools-dbg_1.5.3-1_amd64.deb
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python-genometools_1.5.3-1_amd64.deb
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genometools_1.5.3.orig.tar.gz
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genometools_1.5.3-1.debian.tar.xz

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Accepted mussort 0.3-4 (source all)

[Sascha Steinbiss]

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Format: 1.8
Date: Wed, 16 Jul 2014 22:09:32 +0100
Source: mussort
Binary: mussort
Architecture: source all
Version: 0.3-4
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de
Changed-By: Sascha Steinbiss sa...@tetrinetsucht.de
Description:
 mussort- simple tool that sorts a music collection
Changes:
 mussort (0.3-4) unstable; urgency=low
 .
   * debian/control: fix VCS links
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Accepted aragorn 1.2.36-4 (source amd64)

[Sascha Steinbiss]

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Format: 1.8
Date: Wed, 16 Jul 2014 23:29:34 +0100
Source: aragorn
Binary: aragorn
Architecture: source amd64
Version: 1.2.36-4
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sas...@steinbiss.name
Description:
 aragorn- tRNA and tmRNA detection in nucleotide sequences
Changes:
 aragorn (1.2.36-4) unstable; urgency=low
 .
   * Fix hardening flags
   * Add patch description
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Accepted genometools 1.5.2-4 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 24 May 2014 18:57:45 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.2-4
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Closes: 748305
Changes: 
 genometools (1.5.2-4) unstable; urgency=low
 .
   * Incorporate patches addressing type conversion errors (thanks to
 Michael Tautschnig).
 Closes: #748305
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Accepted genometools 1.5.2-3 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 19 May 2014 23:06:34 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.2-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Closes: 748708 748709
Changes: 
 genometools (1.5.2-3) unstable; urgency=low
 .
   * Address building issues on s390x, powerpc and armhf
   * Don't use -m64 for arm64 (thanks to Logan Rosen)
 Closes: #748708
   * Build-depend on docbook-xsl to fix FTBFS while offline (thanks to
 Logan Rosen)
 Closes: #748709
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genometools_1.5.2-3_amd64.deb
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genometools-common_1.5.2-3_all.deb
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libgenometools0-dev_1.5.2-3_amd64.deb
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Accepted genometools 1.5.2-2 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 15 May 2014 23:23:20 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.2-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss sa...@tetrinetsucht.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes: 
 genometools (1.5.2-2) unstable; urgency=low
 .
   * Split manuals into separate documents to avoid strange LaTeX build issues.
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Accepted genometools 1.5.2-1 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 15 May 2014 10:51:41 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes: 
 genometools (1.5.2-1) unstable; urgency=low
 .
   * New upstream release.
   * Remove symbols file because private symbols are exported (next upstream
 version will properly control exported symbols and a new symbols file
 will be created and maintained)
   * Remove manpages from debian directory as they are now autogenerated on
 build
   * Fix some missing symbols problems
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genometools_1.5.2.orig.tar.gz
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genometools_1.5.2-1.debian.tar.xz

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Accepted mussort 0.3-3 (source all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 14 May 2014 14:07:41 +0100
Source: mussort
Binary: mussort
Architecture: source all
Version: 0.3-3
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de
Changed-By: Sascha Steinbiss sa...@tetrinetsucht.de
Description: 
 mussort- simple tool that sorts a music collection
Changes: 
 mussort (0.3-3) unstable; urgency=low
 .
   * Update standards version to 3.9.5
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Accepted genometools 1.5.1-3 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 10 May 2014 22:28:41 +
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.1-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Closes: 747431
Changes: 
 genometools (1.5.1-3) unstable; urgency=low
 .
   * debian/rules
  - Add basic tests to check whether cairo/pango linking works
  - Clean up indices created by tests to make repeated builds possible
  - Make sure bin/examples/sketch_parsed_with_* are built
  - Enable compiler optimization
   * debian/control
  - Move libgenometools0 package into libs section
  - Switch pango deps to new package
  - Add ruby builddep, required for the testsuite
   * Fix compilation on mips64/mips64el
 Closes: #747431
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Accepted mussort 0.3-2 (source all)

[Sascha Steinbiss]

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Format: 1.8
Date: Tue, 05 Nov 2013 10:57:03 +0100
Source: mussort
Binary: mussort
Architecture: source all
Version: 0.3-2
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de
Changed-By: Sascha Steinbiss sa...@tetrinetsucht.de
Description: 
 mussort- simple tool that sorts a music collection
Closes: 728641
Changes: 
 mussort (0.3-2) unstable; urgency=low
 .
   * Disable build rule to stay within pkg build dir (Closes: #728641)
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Accepted aragorn 1.2.36-2 (source amd64)

[Sascha Steinbiss]

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Architecture: source amd64
Version: 1.2.36-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 aragorn- tRNA and tmRNA detection in nucleotide sequences
Changes: 
 aragorn (1.2.36-2) unstable; urgency=low
 .
   * Adjust weekday in changelog (fixes lintian warning)
   * Fix spelling error in manpage
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Accepted mussort 0.3-1 (source all)

[Sascha Steinbiss]

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Date: Tue, 13 Aug 2013 13:12:42 +0200
Source: mussort
Binary: mussort
Architecture: source all
Version: 0.3-1
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss sa...@tetrinetsucht.de
Changed-By: Sascha Steinbiss sa...@tetrinetsucht.de
Description: 
 mussort- simple tool that sorts a music collection
Closes: 719595
Changes: 
 mussort (0.3-1) unstable; urgency=low
 .
   * Initial release (Closes: #719595)
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Bug#719595: ITP: mussort -- simple tool that sorts a music collection

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss sa...@tetrinetsucht.de

* Package name: mussort
  Version : 0.3
  Upstream Author : Eskild Hustvedt esk...@zerodogg.org
* URL : http://random.zerodogg.org/mussort
* License : GPL
  Programming Lang: Perl
  Description : simple tool that sorts a music collection

Mussort is a useful tool for keeping large music collections in shape. It
recursively searches a directory for MP3, Ogg Vorbis and FLAC files,
processing them one by one. It then reads the information from the file and
puts them into a newly sorted directory tree.


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Accepted aragorn 1.2.36-1 (source amd64)

[Sascha Steinbiss]

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Format: 1.8
Date: Wed, 16 Feb 2013 10:02:30 +0100
Source: aragorn
Binary: aragorn
Architecture: source amd64
Version: 1.2.36-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 aragorn- tRNA and tmRNA detection in nucleotide sequences
Closes: 701571
Changes: 
 aragorn (1.2.36-1) unstable; urgency=low
 .
   * Initial release (Closes: #701571)
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Accepted ltrsift 1.0.2-1 (source amd64 all)

[Sascha Steinbiss]

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Format: 1.8
Date: Mon, 11 Mar 2013 13:39:05 +0100
Source: ltrsift
Binary: ltrsift ltrsift-dbg ltrsift-examples
Architecture: source amd64 all
Version: 1.0.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 ltrsift- postprocessing and classification of LTR retrotransposons
 ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d
 ltrsift-examples - example data for LTRsift
Changes: 
 ltrsift (1.0.2-1) unstable; urgency=low
 .
   * New upstream release
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Accepted genometools 1.5.1-1 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Thu, 07 Mar 2013 14:08:05 +0100
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes: 
 genometools (1.5.1-1) unstable; urgency=low
 .
   * New upstream release.
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Bug#701571: ITP: aragorn -- detect tRNA genes in nucleotide sequences

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss sa...@tetrinetsucht.de

* Package name: aragorn
  Version : 1.2.36
  Upstream Author : Dean Laslett gaiaqu...@gmail.com, Bjorn Canback 
bcanb...@acgt.se 
* URL : http://mbio-serv2.mbioekol.lu.se/ARAGORN/ 
* License : GPL
  Programming Lang: C
  Description : detect tRNA genes in nucleotide sequences

Transfer RNAs (tRNAs) are are small RNA molecules used as a linker between
nucleic acids and amino acids during protein synthesis. ARAGORN detects 
and annotates tRNA and tmRNA genes in (longer) nucleotide sequences like 
published genome sequences. Aragorn employs heuristic algorithms to predict 
tRNA secondary structure, based on homology with recognized tRNA consensus 
sequences and ability to form a base-paired cloverleaf.
The tmRNA detection algorithm is an development of the earlier published 
BRUCE algorithm.


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Accepted genometools 1.5.0-2 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 16 Feb 2013 16:58:11 +0100
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.0-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes: 
 genometools (1.5.0-2) unstable; urgency=low
 .
   * Patch manuals not to use includecomment/excludecomment
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Accepted genometools 1.5.0-1 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Tue, 05 Feb 2013 18:52:22 +0100
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg python-genometools
Architecture: source amd64 all
Version: 1.5.0-1
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
 python-genometools - Python bindings for genometools
Changes: 
 genometools (1.5.0-1) unstable; urgency=low
 .
   * New upstream release
   * bugfixes and cleanups
   * development tool `gt sain' added to run an induced suffix array sorting
 algorithm
   * the -typecheck option in the `gt gff3` and `gt gff3validator` tools
 now also validates parent (part-of) relationships, see -help output for
 details
   * new option -encseq besides -seqfile(s) and -regionmapping to select a
 encseq index as a sequence source
   * GtBioseq backend switched to GtEncseq
   * GtSeqCol is now an interface, GtEncseqCol added
   * GtRankedList added
   * GtSNPAnnotatorStream and `gt snpper' tool added
   * node sorting code is now aware of MD5 hash presence
   * compatibility with old Pango versions inproved
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Accepted ltrsift 1.0.1-1 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Sun, 06 Oct 2012 15:08:11 +0200
Source: ltrsift
Binary: ltrsift ltrsift-dbg ltrsift-examples
Architecture: source amd64 all
Version: 1.0.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 ltrsift- postprocessing and classification of LTR retrotransposons
 ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d
 ltrsift-examples - example data for LTRsift
Closes: 689961
Changes: 
 ltrsift (1.0.1-1) unstable; urgency=low
 .
   * Initial release (Closes: #689961)
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Accepted genometools 1.4.2-3 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 09 Oct 2012 10:04:34 +0200
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg
Architecture: source amd64 all
Version: 1.4.2-3
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
Changes: 
 genometools (1.4.2-3) unstable; urgency=low
 .
   * Use reasonable libc dependency (= 2.13)
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Accepted genometools 1.4.2-4 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 09 Oct 2012 12:24:17 +0200
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg
Architecture: source amd64 all
Version: 1.4.2-4
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
Changes: 
 genometools (1.4.2-4) unstable; urgency=low
 .
   * Remove shlibs.local file
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Accepted genometools 1.4.2-2 (source amd64 all)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 08 Oct 2012 07:51:52 +0200
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg
Architecture: source amd64 all
Version: 1.4.2-2
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
Changes: 
 genometools (1.4.2-2) unstable; urgency=low
 .
   * Fixed libpango-dev dependency
   * Updated manpages
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Accepted genometools 1.4.2-1 (source amd64 all)

[Sascha Steinbiss]

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Format: 1.8
Date: Fri, 05 Oct 2012 15:47:56 +0200
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg
Architecture: source amd64 all
Version: 1.4.2-1
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
Changes: 
 genometools (1.4.2-1) unstable; urgency=low
 .
   * New upstream release
   [ Sponsor Steffen Moeller ]
   * Update of policy to 3.9.4
   * Added DMUA flag
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Accepted genometools 1.4.1-1 (source all amd64)

[Sascha Steinbiss]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Mon, 09 Jul 2012 14:10:23 +0100
Source: genometools
Binary: genometools genometools-common libgenometools0 libgenometools0-dev 
genometools-doc genometools-dbg
Architecture: source amd64 all
Version: 1.4.1-1
Distribution: unstable
Urgency: low
Maintainer: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Changed-By: Sascha Steinbiss steinb...@zbh.uni-hamburg.de
Description: 
 genometools - versatile genome analysis toolkit
 genometools-common - shared data files for GenomeTools
 genometools-dbg - versatile genome analysis toolkit, with debug symbols
 genometools-doc - documentation for GenomeTools
 libgenometools0 - versatile genome analysis library
 libgenometools0-dev - development files for GenomeTools
Closes: 657923
Changes: 
 genometools (1.4.1-1) unstable; urgency=low
 .
   * Initial release (Closes: #657923)
   * the GFF3 parser now handles children which are defined before their parents
   * many small improvements to the GFF3 parser
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