Aw: Re: Help needed for tn-seqexplorer Java package
hello Olivier, hello Andreas, > I do not know how to include resources in jar with jh_build, never did > it before, but Java team should be able to answer this See this rules file: https://anonscm.debian.org/cgit/pkg-java/libjsyntaxpane-java.git/tree/debian/rules Cheers and Best Regards, Felix
Re: Help needed for tn-seqexplorer Java package
On 05/09/2017 01:20 PM, Andreas Tille wrote: > Hi Olivier, > > On Tue, May 09, 2017 at 11:46:51AM +0200, Olivier Sallou wrote: >>> $ tn-seqexplorer >>> Exception in thread "main" java.lang.NullPointerException >>> at sun.awt.SunToolkit.getImageFromHash(SunToolkit.java:725) >>> at sun.awt.SunToolkit.getImage(SunToolkit.java:759) >>> at GUI.LegalDisclaimer.(LegalDisclaimer.java:24) >>> at essgenes.Main.main(Main.java:43) >> It seems it does not find in jar file the file >> /resources/legaldisplaimer.png >> >> A resource file has not been included in the jar file. You can check >> with jar -tf yourjarfile to see if it is present (but I don't think so >> as I see no resource not png file in src) >> As it is an icon, you could simply comment line 24 of >> src/GUI/LegalDisplaimer.java, line 24 to fix the issue > Hmmm, I think I've got it wrong. The needed files are now inside the > upstream tarball (+Git archive) and I installed the files into the > package and fixed the explicite PATH. However, you said the resources > need to be inside the JAR and I have no idea how to approach this by > using jh_build. > > Any idea how to include the resources into the JAR instead just into > the file system? I do not know how to include resources in jar with jh_build, never did it before, but Java team should be able to answer this > > Kind regards > > Andreas. > [1] https://anonscm.debian.org/git/debian-med/tn-seqexplorer.git -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
Re: Help needed for tn-seqexplorer Java package
Hi Olivier, On Tue, May 09, 2017 at 11:46:51AM +0200, Olivier Sallou wrote: > > $ tn-seqexplorer > > Exception in thread "main" java.lang.NullPointerException > > at sun.awt.SunToolkit.getImageFromHash(SunToolkit.java:725) > > at sun.awt.SunToolkit.getImage(SunToolkit.java:759) > > at GUI.LegalDisclaimer.(LegalDisclaimer.java:24) > > at essgenes.Main.main(Main.java:43) > > It seems it does not find in jar file the file > /resources/legaldisplaimer.png > > A resource file has not been included in the jar file. You can check > with jar -tf yourjarfile to see if it is present (but I don't think so > as I see no resource not png file in src) > As it is an icon, you could simply comment line 24 of > src/GUI/LegalDisplaimer.java, line 24 to fix the issue Hmmm, I think I've got it wrong. The needed files are now inside the upstream tarball (+Git archive) and I installed the files into the package and fixed the explicite PATH. However, you said the resources need to be inside the JAR and I have no idea how to approach this by using jh_build. Any idea how to include the resources into the JAR instead just into the file system? Kind regards Andreas. > >> [1] https://anonscm.debian.org/git/debian-med/tn-seqexplorer.git -- http://fam-tille.de
Re: Bug#859660: Bug#859660: artemis running issue
Hi Jerome, On Mon, May 08, 2017 at 01:42:40PM -0500, Jerome wrote: > I put here the results of the commands. Home that helps... I think so since it confirms the expected reason for the issue you observed. > $ sudo update-binfmts --display jarwrapper > update-binfmts: warning: jarwrapper not in database of installed binary > formats. > update-binfmts: exiting due to previous errors > $ sudo update-binfmts --display jar > update-binfmts: warning: jar not in database of installed binary formats. > update-binfmts: exiting due to previous errors I have access to two different boxes, one running Jessie (stable): $ sudo update-binfmts --display jarwrapper [sudo] password for tillea: jarwrapper (enabled): package = type = magic offset = 0 magic = PK\x03\x04 mask = interpreter = /usr/bin/jarwrapper detector = /usr/bin/jardetector $ sudo update-binfmts --display jar jar (enabled): package = openjdk-7 type = magic offset = 0 magic = PK\x03\x04 mask = interpreter = /usr/bin/jexec detector = and one running Stretch (testing): $ sudo update-binfmts --display jarwrapper jarwrapper (enabled): package = jarwrapper type = magic offset = 0 magic = PK\x03\x04 mask = interpreter = /usr/bin/jarwrapper detector = /usr/bin/jardetector $ sudo update-binfmts --display jar jar (enabled): package = openjdk-7 type = magic offset = 0 magic = PK\x03\x04 mask = interpreter = /usr/bin/jexec detector = Could you please post the result of apt-cache policy jarwrapper make sure it is installed sudo apt-get install jarwrapper and try again? If artemis works afterwards the solution would be to add jarwrapper to the dependencies (hmmm, I somehow assumed that this would be the case but its not. :-() Thanks for your patience Andreas. -- http://fam-tille.de
Re: Help needed for tn-seqexplorer Java package
On 05/08/2017 01:08 PM, Andreas Tille wrote: > Hi again, > > On Sat, May 06, 2017 at 09:23:27AM +0200, Andreas Tille wrote: >> I intend to package tn-seqexplorer[1]. I have removed all JAR files >> upstream included into the sources and managed to replace several by >> Debian packages. I also packaged libexternalsortinginjava-java[2] which >> is used by tn-seqexplorer and uploaded it to new. > Meanwhile libexternalsortinginjava-java was accepted in unstable (thanks > to ftpmaster for fast processing). I also somehow managed to work around > the other build issues. Now I'm stumbling upon the fact that the program > does not run: > > $ tn-seqexplorer > Exception in thread "main" java.lang.NullPointerException > at sun.awt.SunToolkit.getImageFromHash(SunToolkit.java:725) > at sun.awt.SunToolkit.getImage(SunToolkit.java:759) > at GUI.LegalDisclaimer.(LegalDisclaimer.java:24) > at essgenes.Main.main(Main.java:43) It seems it does not find in jar file the file /resources/legaldisplaimer.png A resource file has not been included in the jar file. You can check with jar -tf yourjarfile to see if it is present (but I don't think so as I see no resource not png file in src) As it is an icon, you could simply comment line 24 of src/GUI/LegalDisplaimer.java, line 24 to fix the issue Olivier > > > Any hint what might be wrong here? > > Kind regards > > Andreas. > > >> [1] https://anonscm.debian.org/git/debian-med/tn-seqexplorer.git >> [2] https://anonscm.debian.org/git/pkg-java/libexternalsortinginjava-java.git -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
