Re: Bug#685351: Bug#685351: Help: Please seek for sources of some JS files in GNUmed [Was: Bug#685351: src:gnumed-client: Missing source code for *.js files]
Hi On Friday, September 07, 2012 01:21:41 PM Andreas Tille wrote: > This leaves us with two options: > > 1. Bother FowWiki upstream what they did really used (they must somehow > have these files!) > 2. Replace the installed JS script by what we get via yui-compressor > from the sources above (which might most probably work as well > ... hopefully. > > Finally there are the remaining files in > >doc/user-manual/rsrc/System/JavascriptFiles/foswiki*.js > > were I also failed finding the source. > I will contact the Foswiki authors. Sebastian -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/5251214.2gmaskl...@linux.fritz.box
Re: New upstream version of velvet contains debian/ dir
Hi Andreas, I wanted to be clear on what you're asking. We install everything on our cluster using Debian packages, and when packaging isn't done elsewhere we do it for internal use, and offer it to the public for use at their leisure from our apt repo. For key bioinformatics software we re-package them specially so that all executables contain version numbers, and different versions result in different packages. This is part of our reproducibility system, and may be of use to some, but certainly not all users. Are you telling me that we're doing the packaging incorrectly, or that we shouldn't make an apt repository available? Thanks for any advice you have.. Scott -- Scott Smith Manager, Application Programming and Development Analysis Pipeline The Genome Institute Washington University School of Medicine On Sep 7, 2012, at 12:52 PM, Andreas Tille wrote: > Hi Scott, > > when I downloaded thesource tarball of new upstream version of velvet I > noticed that it contains a debian/ directory. This is usually a bad idea > and should not be done (feel free to ask for a detailed explanation why > and I spend some time to pick links and give more detailed reasons.) > > It would be really great if you would drop this from your next source > release. If you really like to maintain the debian/ directory I would > suggest you join the Debian Med team which maintains a lot of medical > and micro-biological software in its version control system. We would > be really happy to see you in our team and you can trust on kind > guidance in case of some Debian related issues. You can also influence > the soonish release of new versions if you ask for sponsoring your work > to official Debian mirrors. > > Kind regards > > Andreas. > > -- > http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/f616305f-c6bf-43ec-8659-909c1bfc4...@genome.wustl.edu
New upstream version of velvet contains debian/ dir
Hi Scott, when I downloaded thesource tarball of new upstream version of velvet I noticed that it contains a debian/ directory. This is usually a bad idea and should not be done (feel free to ask for a detailed explanation why and I spend some time to pick links and give more detailed reasons.) It would be really great if you would drop this from your next source release. If you really like to maintain the debian/ directory I would suggest you join the Debian Med team which maintains a lot of medical and micro-biological software in its version control system. We would be really happy to see you in our team and you can trust on kind guidance in case of some Debian related issues. You can also influence the soonish release of new versions if you ask for sponsoring your work to official Debian mirrors. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120907115212.gc31...@an3as.eu
Bug#686938: ITP: libvm-ec2-perl
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-Debbugs-Cc: debian-med@lists.debian.org * Package name: libvm-ec2-perl Version : 1.17 Upstream Author : Lincoln D. Stein * URL : http://search.cpan.org/~lds/VM-EC2-1.02/ * License : Artistic 1 and GPL-1 Programming Lang: Perl Description : limited interface to Amazon EC2 REST tools This is an interface to Amazon EC2 REST tools that follows the 2011-05-15 API. Author created it because he needed access to the Tag and TagSet interfaces. The core Amazon API is supported, but support for VPC, clusters, spot instances and reserved instances is incomplete. This package is a dependency for gbrowse package. -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
Re: Bug#685351: Bug#685351: Help: Please seek for sources of some JS files in GNUmed [Was: Bug#685351: src:gnumed-client: Missing source code for *.js files]
Hi Olivier, On Fri, Sep 07, 2012 at 09:17:30AM +0200, olivier.sal...@codeless.fr wrote: > > >> MIT or GPL2 > Should be available here: > https://github.com/vakata/jstree/tree/v.1.0/dist (there are 2 branches > available, should check which branch match) > >> > >>> user-manual/rsrc/System/JQueryPlugin/plugins/foswiki/jquery.foswiki.js > >> http://foswiki.org/Extensions/JQueryPlugin > >> GPL > Could be > https://github.com/foswiki/JQueryPlugin/tree/master/pub/System/JQueryPlugin/plugins/foswiki > (branch should be checked too) Those links are looking pretty close (I also checked the branches) and after conversion using yui-compressor (which is used according to the makefiles) the result smells somehow like the code in GNUmed but is different enough to tell for sure that this is not the exact source file which was used. This leaves us with two options: 1. Bother FowWiki upstream what they did really used (they must somehow have these files!) 2. Replace the installed JS script by what we get via yui-compressor from the sources above (which might most probably work as well ... hopefully. Finally there are the remaining files in doc/user-manual/rsrc/System/JavascriptFiles/foswiki*.js were I also failed finding the source. Kind regards and thanks for checking Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120907112141.ga31...@an3as.eu
Re: Help: Please seek for sources of some JS files in GNUmed [Was: Bug#685351: src:gnumed-client: Missing source code for *.js files]
Hi again, I grepped the source of https://github.com/foswiki/JQueryPlugin/downloads but failed to grep for typical strings inside the JS files in question. Would you mind asking the FosWiki authors for the uncompressed JS files? If this fails we might give up and simply remove the files in question and accept the more ugly user documentation. Kind regards Andreas. On Fri, Sep 07, 2012 at 08:10:19AM +0200, Andreas Tille wrote: > Hi Sebastian, > > first I want to say that I will check later which JS we are really using > - I remember that I injected Debian replacements and so we can safely drop > the sources. Need to check this when I find some couple of minutes spare > time. > > On Fri, Sep 07, 2012 at 06:29:26AM +0200, Sebastian Hilbert wrote: > > I was not aware those js files are somehow compressed. I was under the > > impression these files are pure source files. > > These are for sure ASCII files which you might be able to edit but it is > not considered as "source" because comments and blanks are removed and > probably some other optimisations. If you have time you might like to > read the longish thread about this on debian-devel list (I only browsed > a small amount of it). > > > If not please drop the js files as > > the doc packge will work without them. Output will just look a bit uglier > > but > > I don't care. So before dropping content please consider dropping styling. > > OK, message taken. I hope to have this ready at beginning of next week. > > Kind regards > >Andreas. > > -- > http://fam-tille.de > > > -- > To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org > with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org > Archive: http://lists.debian.org/20120907061019.gb4...@an3as.eu > > -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120907082059.gd4...@an3as.eu
