Re: Fwd: RFS: scscp-imcce/0.7.0+ds-1 [ITP] -- IMCCE SCSCP C Library

2012-09-17 Thread olivier.sal...@codeless.fr 
Le 8/28/12 10:54 PM, Jerome BENOIT a écrit :
 Hello:

 On 28/08/12 12:16, olivier.sal...@codeless.fr wrote:

 Le 8/28/12 12:12 PM, Steffen Möller a écrit :
 Hello,

 I am totally swamped, but also like seeing so many astronomers now
 surfacing on Debian. I would like to introduce you to Olivier on the cc
 line, who I have some hope to be located (relatively speaking) close to
 you. Should Olivier (unexpectedly as I experienced to know him) not be
 available, and nobody else on debian-science show up, then contact me
 again, please.
 Hi,
 I won't be able to look at this before 2 weeks. But I would be glad to
 help after this.

 I am glad to read that.
Hi,
I am now available to have a look at your package. Is it still needeed?

I will go through the review of the package and send you my comments so
that you update the package.
If package is to be in debian-science, you should ask to be added on
Alioth to the debian-science team so that you put the debian code in the
repository. Or should it be put in debian-med repository?

 Nevertheless, please observe that this package concerns a library that
 implements the SCSCP protocol.
 This protocol is meant for communication between CAS (Computer
 Algebraic Systems) as Maple, Mathematica,
 GAP, ... Actually is is already implemented in Maple and the last GAP
 (not yet available in Debian).
 So to speak, it is this package does not target astronomers in
 particular. Personally, I am not an
 astronomer. I have in main to write an ad hoc CAS to deals with
 polygonal knots which can be called
 by softwares used in protein biology as GROMACS, PyMOL, ...

 I guess that I should made this point clearer before.



 Olivier

 Cheers,

 Steffen

 On 08/28/2012 03:12 AM, Jerome BENOIT wrote:

  Original Message 
 Subject: RFS: scscp-imcce/0.7.0+ds-1 [ITP] -- IMCCE SCSCP C Library
 Date: Tue, 28 Aug 2012 03:03:08 +0200
 From: Jerome Benoitcalcu...@rezozer.net
 To: Debian Bug Tracking Systemsub...@bugs.debian.org

 Package: sponsorship-requests
 Severity: normal

 Dear mentors,

 I am looking for a sponsor for my package scscp-imcce

  * Package name: scscp-imcce
Version : 0.7.0+ds-1
Upstream Author : Mickael Gastineaugastin...@imcce.fr
  * URL : http://www.imcce.fr/trip/scscp/
  * License : CeCILL v2.0
Section : math

 It builds those binary packages:

  libscscp-doc - IMCCE SCSCP C Library -- reference manual
  libscscp0  - IMCCE SCSCP C Library -- library package
  libscscp0-dbg - IMCCE SCSCP C Library -- debug symbols package
  libscscp0-dev - IMCCE SCSCP C Library -- development package

 To access further information about this package, please visit the
 following URL:

  http://mentors.debian.net/package/scscp-imcce

 Alternatively, one can download the package with dget using this
 command:

  dget -x
 http://mentors.debian.net/debian/pool/main/s/scscp-imcce/scscp-imcce_0.7.0+ds-1.dsc


 More information about scscp can be obtained from
 http://www.imcce.fr/trip/scscp/

 First upload.

 Best wishes,
  Jerome BENOIT



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Re: [Debian-med-packaging] r12212 - trunk/packages/libsbml/trunk/debian

2012-09-17 Thread Andreas Tille 
Hi Ivo,

On Mon, Sep 17, 2012 at 01:20:11PM +0200, Ivo Maintz wrote:
 I'm very unhappy with the tar solution in the clean target, too.
 Unfortunately, make changes a lot of source files instead of creating
 new ones, and the clean target does not fix it - in this case,
 untaring the sources is the less painfull (but working!) thing.

Did you checked out my mail

   
http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-September/017185.html

it gives several hints how to enhance the packaging and amongst these a
hint how to deal with such issues properly (keyword autoreconf)?

Feel free to ping me if you need more explicite help - I'd happily work
together with you on enhancing the packaging (even if I admit this needs
to wait until October because I'll be on VAC until then).

Kind regards

   Andreas.

-- 
http://fam-tille.de


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One more non-free data file in EMBOSS.

2012-09-17 Thread Charles Plessy 
Dear all,

I did not realise before, but EMBOSS distribute more external data files, in
particular some ontologies.

Among them, I have checked the biggest, Gene Ontology.

  http://www.geneontology.org/GO.cite.shtml

  GO Usage Policy

  The GO Consortium gives permission for any of its products to be used without
  license for any purpose under three conditions:

That the Gene Ontology Consortium is clearly acknowledged as the source of 
the product;

That any GO Consortium file(s) displayed publicly include the date(s)
and/or version number(s) of the relevant GO file(s) (the GO is evolving and
changes will occur with time);

That neither the content of the GO file(s) nor the logical relationships
embedded within the GO file(s) be altered in any way.

  This policy covers the GO ontology, the GO database and the annotations
  provided by GO Consortium members.

There are at least six more ontologies, for which I have not checked the
license yet.

The problem is that, according to #682042, « Some EMBOSS applications assume
these databases are installed ».  I am currently considering to packages these
data files in non-free, and have EMBOSS suggest them, or rename the current
emboss package emboss-core, and create a non-free metapackage which would
depend on emboss-core and the non-free data.

Your thoughts about how to solve that problem are welcome.

Cheers,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan


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