Re: FWD Next BioPerl release
Le 2/6/13 5:43 AM, Charles Plessy a écrit : Hi all, for your information, there is a new BioPerl release scheduled soon. I a still very busy at work and may not be able to push it in Debian quickly. Also, we need to ensure compatibility with the reverse dependancies. What do you propose ? Push it to experimental but build test then try to build all reverse dependants? I think there are many packages that depend on BioPerl, how can we test them all ? (one by one on our computer? or is there a Debian tool/way to do so?) I am committed to keep BioPerl in shape in Debian, but if somebody wants to step in and take the lead, I would be pleased. I can take the lead on BioPerl if you want. Cheers, -- Charles - Forwarded message from Fields, Christopher J cjfie...@illinois.edu - Date: Tue, 5 Feb 2013 21:53:29 + From: Fields, Christopher J cjfie...@illinois.edu To: BioPerl List bioper...@lists.open-bio.org Subject: [Bioperl-l] Next BioPerl release Message-ID: 118f034cf4c3ef48a96f86ce585b94bf6ce18...@chimbx5.ad.uillinois.edu All, I am scheduling the next BioPerl CPAN release tentatively for March 1. Any help in triaging bug reports would be greatly appreciated! Amongst all other changes, as mentioned in a separate thread we will remove Bio::FeatureIO, now developed in a separate repository: https://github.com/bioperl/Bio-FeatureIO Feedback, suggestions, etc are greatly appreciated. chris ___ Bioperl-l mailing list bioper...@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l - End forwarded message - -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/51120b2a.7000...@codeless.fr
Re: FWD Next BioPerl release
Le Wed, Feb 06, 2013 at 08:50:02AM +0100, olivier.sal...@codeless.fr a écrit : What do you propose ? Push it to experimental but build test then try to build all reverse dependants? I think there are many packages that depend on BioPerl, how can we test them all ? (one by one on our computer? or is there a Debian tool/way to do so?) I can take the lead on BioPerl if you want. Hi Olivier, yes, please take the lead if you feel so. Given that you maintain gbrowse, it makes a lot of sense. We can commit the next upstream version in an experimental branch of the Git repository of the bioperl source package. Then either we upload, or the developers build the package themselves and test it. To test the reverse dependancies, since most of them execute their regression tests at build time, we can for instance install bioperl in a chroot, and rebuild all of them. This may be eased by pbuilder or schroot. - /usr/share/doc/pbuilder/examples/rebuild/README - http://wiki.debian.org/qa.debian.org/ArchiveTesting Cheers, -- Charles Plessy Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130206133505.ga19...@falafel.plessy.net
Fwd: Possible misconfiguration of mail server on wagner?
Hi guys, It looks like there's a problem with commit notifications on alioth. Yaroslav identified it to be possibly due to cia.vc being down. So if you look into your spam folders and run away trying to hide from CIA who spies on you from alioth, relax :} Andrei -- Forwarded message -- From: Yaroslav Halchenko deb...@onerussian.com Date: 6 February 2013 17:11 Subject: Re: Possible misconfiguration of mail server on wagner? To: andrei zavada johnhom...@gmail.com On Wed, 06 Feb 2013, andrei zavada wrote: CIA -- is a system to send announcements on commits to repositories... apparently http://cia.vc is down ... not sure how/why debian-med people Ah, ok then. haven't got similar ones and disabled the hooks -- you better clarify on the debian-med mailing list I bet they have more important things to do than look into their (gmail) spam folders :} no -- still -- better to inform them -- they might want to disable all of them at once -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/CADRQDB2gPh240=e53c2ohl-zt0w38fjkun2iorode3lktga...@mail.gmail.com
Re: Fwd: Possible misconfiguration of mail server on wagner?
Hi Andrei, On Wed, Feb 06, 2013 at 06:01:06PM +0200, andrei zavada wrote: Hi guys, It looks like there's a problem with commit notifications on alioth. Yaroslav identified it to be possibly due to cia.vc being down. CIA is not possibly down but definitely down. There was some announcement that the service was replaced by KGB.[1] ;-) In practice this means for us at least to deactivate CIA for our commits - it would even better to check what is needed to use KGB - some hints were given here: [2] So if you look into your spam folders and run away trying to hide from CIA who spies on you from alioth, relax :} ... or instead of relax try to implement the new service. :-) In any case the mails are mostly harmless - I did not cared to stop these to make a permanent reminder that there is some work left to do to implement the replacement. Kind regards Andreas. [1] http://lists.debian.org/debian-qa/2013/01/msg00059.html [2] http://lists.debian.org/debian-qa/2013/01/msg00060.html -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130206192254.ga20...@an3as.eu
Re: libsbml_5.7.0
Hi Ivo, On Mon, Feb 04, 2013 at 05:04:02PM +0100, Ivo Maintz wrote: I prepared libsbml 5.7.0 for upload. Please have a look on it, I'm thanks for the preparation - I have checked the build and it looks OK. I guess we can upload to unstable (because it is not in testing anyway.) not happy with still overriding the lintian warnings for hardening-no-relro and hardening-no-fortify-functions; any idea about this? From a quick view it looks like a false positive. The hardening options seem to be OK. I would not override this warning to make sure it will not be hidden from some false positive research. However, I'm not fully competent in this question and if you want to be fully sure you might like to ask this question on debian-ment...@lists.debian.org. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130206200543.gc20...@an3as.eu
Andreas@FOSDEM
I wonder if there was/is/will be a video? Andreas -- were there (interesting) questions? sorry for ruining the show if you are about to release a full featured report ;) - Forwarded message from Google Alerts googlealerts-nore...@google.com - Date: Thu, 07 Feb 2013 01:06:29 + From: Google Alerts googlealerts-nore...@google.com To: yarikop...@gmail.com Subject: Google Alert - Debian Med === Web - 1 new result for [Debian Med] === Debian Med - A service for scientists in medicine and ... - Fosdem A service for scientists in medicine and biomedical research. Andreas Tille. Debian. Brussels, 02. February 2013. Andreas Tille (Debian). Debian Med. Brussels ... https://fosdem.org/2013/schedule/event/debian_med/attachments/slides/171/export/events/attachments/debian_med/slides/171/1110_Andreas.pdf - End forwarded message - -- Yaroslav O. Halchenko http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Postdoctoral Fellow, Department of Psychological and Brain Sciences Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130207030805.gv8...@onerussian.com
