Re: Possible GSoC idea: Cloud images for bioinformatics.
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 02/22/2013 01:04 AM, Charles Plessy wrote: > Dear all, > > 2012 has been a year of progresses in Debian's support for clouds, > and Debian is planning to apply again to the Google Summer of > Code. > > https://lists.debian.org/20130219002544.GA7036@leliel Good idea! > I would like to propose a bottom-up project with the goal of > setting an infrastructure or workflow allowing one to build and use > easily a Debian (Med) image where given bioinformatics tools are > available at a version selected by the user (tapping in > snapshots.debian.org or perhaps other repository within our web of > trust if necessary). [...] > What do you think ? Sounds useful! May I point out that there is a similar effort already going on with Cloud BioLinux [1]. Maybe Tim has something more to say about that? In the paper it is stated that they are aiming to improve their collaboration with the Deb Med community. Disclaimer: I do not have first-hand experience with Cloud BioLinux, I just handed out some Cloud Computing papers for student seminar assignments and that was one of them... [1] http://www.biomedcentral.com/1471-2105/13/42 Best, Sascha - -- Sascha Steinbiss Center for Bioinformatics University of Hamburg Bundesstr. 43 20146 Hamburg Germany Email: steinb...@zbh.uni-hamburg.de URL:http://www.zbh.uni-hamburg.de/steinbiss Phone: +49 (40) 42838 7322 FAX:+49 (40) 42838 7312 -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.11 (GNU/Linux) iEYEARECAAYFAlEnIzMACgkQvCCdOseRus+QlgCglUEWsiSun99JA7f+1JF2uXPd AocAni8vZYEoVuJTpXx37NxWIdmi0mCc =rlln -END PGP SIGNATURE- -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/51272334.5060...@zbh.uni-hamburg.de
Re: Possible GSoC idea: Cloud images for bioinformatics.
Hi, On Fri, Feb 22, 2013 at 09:04:12AM +0900, Charles Plessy wrote: > 2012 has been a year of progresses in Debian's support for clouds, > and Debian is planning to apply again to the Google Summer of Code. > > https://lists.debian.org/20130219002544.GA7036@leliel > > I would like to propose a bottom-up project with the goal of setting an > infrastructure or workflow allowing one to build and use easily a Debian (Med) > image where given bioinformatics tools are available at a version selected by > the user (tapping in snapshots.debian.org or perhaps other repository within > our web of trust if necessary). > ... Sounds good. I'm not that involved into clouds but remember that I have read an article http://julien.danjou.info/blog/2013/cloud-init-utils-debian which sounds very close to what you are proposing (at least with my naive imagination about this topic.) Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130222073627.gd23...@an3as.eu
Re: hunspell-en-med packaging
Hi Sukhbir, On Fri, Feb 22, 2013 at 01:25:30AM -0500, Sukhbir Singh wrote: > I did post to the mailing list, but as I said it seems to be very low > traffic (last post was in October 2012) and I didn't get any reply. > > So the issue is even though everything seems to be right with the > package, I am not able to use the spell checker with OpenOffice. What about contacting the maintainer of hunspell-de-med directly? Tobias was quite active in Debian Med in the very first days. Either he has solved the problem you are actually facing or he has the very same problem - and you could try fixing it together. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130222073114.gc23...@an3as.eu
Re: hunspell-en-med packaging
Hi, > http://anonscm.debian.org/gitweb/?p=debian-med/hunspell-en-med.git;a=summary > > Thanks! > > PS: I will get in touch with the dictionaries packaging team also, but I > decided to ask here first because their mailing list seems to have low > activity. I did post to the mailing list, but as I said it seems to be very low traffic (last post was in October 2012) and I didn't get any reply. So the issue is even though everything seems to be right with the package, I am not able to use the spell checker with OpenOffice. -- Sukhbir -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130222062530.ga22...@gmail.com
Possible GSoC idea: Cloud images for bioinformatics.
Dear all, 2012 has been a year of progresses in Debian's support for clouds, and Debian is planning to apply again to the Google Summer of Code. https://lists.debian.org/20130219002544.GA7036@leliel I would like to propose a bottom-up project with the goal of setting an infrastructure or workflow allowing one to build and use easily a Debian (Med) image where given bioinformatics tools are available at a version selected by the user (tapping in snapshots.debian.org or perhaps other repository within our web of trust if necessary). The project would be bottom-up in the sense that it would be up to the prospective students to propose a sensible design, and that in the absence of something convincing the project will not start (that is: I do not intend to propose a top-down implementation design). What do you think ? -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130222000412.ga11...@falafel.plessy.net
Re: [fis-gtm] git-buildpackage works until debsign
Hi Amul, On Thu, Feb 21, 2013 at 03:49:58PM -0500, Amul Shah wrote: > >Assumed you mean with "released" the upload to the Debian mirror: You > >just need to confirm here (on the list) that you are ready with the > >package. A sponsor (any DD in the team - in this case most probably > >but not necessarily me) will check the packaging and upload. > > [amul:3] That is what I mean. OK, so the question is answered. > >It makes sense to have one key and attach all your e-mail addresses to > >it - except you have some very specific needs. > > [amul:3] I have created a key with two email addresses and put it into my > local keyring. However the build still fails. > > > Finished running lintian. > Now signing changes and any dsc files... > signfile fis-gtm_6.0-001-1.dsc Amul Shah > gpg: skipped "Amul Shah ": secret key not available > gpg: /tmp/debsign.MfDS04bE/fis-gtm_6.0-001-1.dsc: clearsign failed: secret > key not available > debsign: gpg error occurred! Aborting > debuild: fatal error at line 1278: > running debsign failed > gbp:error: Couldn't run 'debuild -i -I': debuild -i -I returned 29 > > > [amul:3] Any ideas on what is wrong? I'm using the script recommended in the > instructions. You might like to check using $ gpg --edit-key whether the ID "Amul Shah " is attached to this key. If not you should add this ID. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130221212836.ga10...@an3as.eu
[fis-gtm] git-buildpackage works until debsign
Hi Andreas, On 02/19/2013 03:32 PM, Andreas Tille wrote: Assumed you mean with "released" the upload to the Debian mirror: You just need to confirm here (on the list) that you are ready with the package. A sponsor (any DD in the team - in this case most probably but not necessarily me) will check the packaging and upload. [amul:3] That is what I mean. I did create a GPG key for myself defined for my personal email address, not my work email address. How do others handle this? Do you create two keys? Or do you create just one for your personal email address? It makes sense to have one key and attach all your e-mail addresses to it - except you have some very specific needs. [amul:3] I have created a key with two email addresses and put it into my local keyring. However the build still fails. Finished running lintian. Now signing changes and any dsc files... signfile fis-gtm_6.0-001-1.dsc Amul Shah gpg: skipped "Amul Shah ": secret key not available gpg: /tmp/debsign.MfDS04bE/fis-gtm_6.0-001-1.dsc: clearsign failed: secret key not available debsign: gpg error occurred! Aborting debuild: fatal error at line 1278: running debsign failed gbp:error: Couldn't run 'debuild -i -I': debuild -i -I returned 29 [amul:3] Any ideas on what is wrong? I'm using the script recommended in the instructions. thanks, Amul _ The information contained in this message is proprietary and/or confidential. If you are not the intended recipient, please: (i) delete the message and all copies; (ii) do not disclose, distribute or use the message in any manner; and (iii) notify the sender immediately. In addition, please be aware that any message addressed to our domain is subject to archiving and review by persons other than the intended recipient. Thank you. -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/51268876.5020...@fisglobal.com
