New in the team

2014-04-25 Thread Navid Fehrenbacher

Hi,

I am Navid Fehrenbacher from Q-Leap Networks and I just
joined the Debian Med team. I'm doing a 3-year
apprenticeship at Q-Leap in software development
(currently 1st year) and have started with the
backporting of DebianMed packages.

Eventually I want to maintain one or more DebianMed
packages of the list, that Q-Leap communicated to take
over. Currently I'm still a beginner in Debian packaging,
but with this list and here at Q-Leap I have good
resources to learn from.

All the best,

Navid

---
http://www.q-leap.com  /http://qlustar.com


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Re: InVesalius 3b5

2014-04-25 Thread Thiago Franco Moraes
Hi Andreas,

On Thu, Apr 24, 2014 at 3:32 AM, Andreas Tille andr...@an3as.eu wrote:

 Hi Thiago,

 thanks for updating the invesalius package.

 On Wed, Apr 23, 2014 at 03:06:45PM -0300, Thiago Franco de Moraes wrote:
  Hi all,
 
  We released a new version of InVesalius on the last thursday and now I'm
 working on the Debian package. I updated all necessary fields from debian
 folder and created some new files. Since we are using now Cython (so is
 necessary to compile) in one of the modules we use, I created a new
 sub-package, called invesalius-bin to keep it. The invesalius-bin is
 arch-dependent, and my idea is to put all cython stuff we develop in this
 sub-package. Apparently it's all OK except for 2 things:
 
  - When I create the packages it runs the command to compile the cython
 two times, one in dh_auto_build and other in dh_auto_install. It's not a
 problem exactly, but it's processing lost ... To solve this I'll have to
 override dh_auto_install?

 Most probably you need to tell dh_auto_install not to repeat this step.
 I suspect that Invesalius' build system might deserve some optimisation
 to prevent this.  I guess you can get more detailed help at
 debian-pyt...@lists.debian.org.


OK!


  - Lintian gives me this warning invesalius-bin:
 arch-dependent-file-in-usr-share
 usr/share/invesalius/invesalius/data/mips.so. But invesalius-bin is arch
 dependent, in debian/control it's marked as Architecture: any, is there
 some details I'm forgetting? I have the impression it happens because this
 file (mips.so) is placed in a folder created by the invesalius package
 (which is arch independent), but I'm not sure.

 Well, lintian does not say that the package is arch independent.  It
 says that there is an arch-dependent file in /usr/share where such files
 do not belong to - and lintian is correct here.  You need to move this
 file to /usr/lib.  In case the file will be found by Invesalius there I
 also recommend to consult the Debian Python list where you can most
 probably get helpful hints for a sensible placement of files.


I've understood. I'll post this problem there. I think I'll have to tell
the setup.py to install this file in python dist-packages and I'll have to
patch InVesalius to import this file from there.


  PS. I saw invesalius will be removed from Debian Testing because of a
 problem with libvtk-java. What's the situation of this? Sorry for not
 manifest me earlier, but I was out for more than a month and I had some
 problems with my email.

 Several packages were removed and I really hope that libvtk maintainers
 will care about this.  As far as I understood the issue is not too hard
 to fix and packages will automigrate back to testing once this has
 happened.  Providing libvtk maintainers with patches (if not yet done)
 is always welcome. :-)

 Kind regards

   Andreas.

 --
 http://fam-tille.de


Thanks Andreas!


Re: New in the team

2014-04-25 Thread Tony Travis
On 25/04/14 15:02, Navid Fehrenbacher wrote:
 Hi,
 
 I am Navid Fehrenbacher from Q-Leap Networks and I just
 joined the Debian Med team. I'm doing a 3-year
 apprenticeship at Q-Leap in software development
 (currently 1st year) and have started with the
 backporting of DebianMed packages.
 [...]

Hi, Navid.

Welcome to the team :-)

  Tony.


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Re: NewContributorGame: R-ape / OpenBugs

2014-04-25 Thread Dybian
Hi Andreas,
I have just finished my package of r-cran-ape, so you can find it on
https://bitbucket.org/Dybian/package-debian-r-cran-ape

I tried it and it seem to work fine (install, uninstall and run in R), I
have only one warning with lintian about that a new package should close a
ITP bug.

What do you think about it?

Dylan