Re: r17823 - in trunk/packages/arb/trunk/debian: . conf patches source
Hi Elmar, On Tue, Sep 02, 2014 at 07:01:16PM +0200, Elmar Pruesse wrote: > > I would like to change you one thing: Lintian considers the upload an > > NMU (non maintainer upload). Please make sure that your ID in > > debian/control is identical to debian/changelog. I would have fixed > > this but I don't know which one you prefer. > > fixed Thanks. > > W: arb source: outdated-autotools-helper-file > > GDE/PHYML20130708/phyml/config.guess 2012-02-10 > > I: arb: spelling-error-in-binary usr/lib/arb/bin/phyml_20130708 ouput output > > These don't matter as phyml isn't built. Not sure how to turn them off. Well, it actually *is* built and moved inside the package. Otherwise lintian wouldn't notice the spelling mistake. I do not mind much about the spelling error but if you think the binary should not be in the package you should either fix the build system or remove the executable later (and perhaps set a symlink to the Debian packaged phyml). > > I: arb-common: unused-debconf-template arb/group > > This either needs an override, or a change to arb-common.postinst so > that lintian recognizes that arb/group is used. This code dates from long ago where I have considered this useful. A lintian override might do here. > Alternatively, the arb > group could be removed completely. This is a question I forgot to ask. If you consider all this group stuff as useless we might even drop all the debconf stuff. Probably it could be regarded as overengeniering for not much use. So feel free to drop it at all (since you are a real user and know the real needs). Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140903062542.gd23...@an3as.eu
Re: Fremedforms 0.9.2 not on sourceforge yet (Was: r17893 - trunk/packages/freemedforms-project/trunk/debian)
Hi Eric, On Tue, Sep 02, 2014 at 04:17:13PM +0200, Eric Maeker wrote: > Yes the sf redirector is out of date. 0.9.2 src and sig are correctly > uploaded on sf. This is a know big of this redirector. > I do not have workaround for this. I guess you noticed that I have uploaded 0.9.2 packages which I manually fetched from sourceforge. However, due to the redirector problem I had no chance to verify the watch file. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140903061811.gc23...@an3as.eu
Re: Updating the fis-gtm package to V6.1-000
Hi Amul, On Tue, Sep 02, 2014 at 10:34:48AM -0400, Amul Shah wrote: > [amul:6] It works! :-) I returned this morning (Monday was a holiday > in the US) to find git-buildpackage asking for the key's password. > Entered it and packages were created! :-) BTW, there is most probably an option to skip the signing step. If you like this more you could dive into the manuals. I personally never have seeked for this but I'm sure it exists. > [amul:6] TODOs: > - CMakeLists.txt for V6.1-000 does not build the encryption > libraries. The builds work, but I need to (a) test the result, (b) > create the patch for the debian package, (c) carry the build changes > forward to the upstream release and lastly, (d) update the source > README. > - Fix the issue where the /opt/fis-gtm/current link points to the 32bit > version of GT.M for the 64bit install > - Allow i386 and x86_64 packages to coexist. Currently the packages > conflict. Also ensure that users can install multiple GT.M versions. > > [amul:6] I'm working on the top bullet right now. I will follow up with > questions - after searching :) - for the last two. Thanks for letting us know and thanks for keeping on with the work on fis-gtm Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140903061639.gb23...@an3as.eu
Re: Free source code of fastsimcoal2 available?
Hi Laurent, thanks for your quick reply even if it is sad and actually unexpected news since so many similar tools consider opening the source as a productivity enhancement. Feel free to contact us on this channel in case you might change your mind. Kind regards Andreas. On Tue, Sep 02, 2014 at 09:12:24PM +0200, Laurent Excoffier wrote: > Hi, > > I'm very flattered that you think of including fastsimcoal2 in the > Debian distribution, but unfortunately, the source code is not > available > > best regards > > laurent > > On 02.09.2014 10:45, Andreas Tille wrote: > >Hi Laurent, > > > >I'm writing you on behalf of the Debian Med team which tries to assemble > >free software in biology inside the official Debian distribution. We > >have created Debian packages of several biological applications[1] and > >development tools[2]. When running the test suite of BioPython I > >realised that it has an interface to fastsimcoal2 and I had a look at > >its website[3]. Unfortunately I can find only binary downloads without > >source code there and no statement whether the source might be available > >or not. I wonder whether you might consider to release the code under a > >free license which would enable us to include fastsimcoal2 into Debian. > > > >Kind regards > > > > Andreas. > > > >[1] http://blends.debian.org/med/tasks/bio > >[2] http://blends.debian.org/med/tasks/bio-dev > >[3] http://cmpg.unibe.ch/software/fastsimcoal2/ > > > > -- > Laurent Excoffier > > Computational and Molecular Population Genetics (CMPG) > Institute of Ecology and Evolution, University of Bern > 6, Baltzerstrasse, CH-3012 Bern, Switzerland > Tel: +41 31 631 30 31 Fax: +41 31 631 48 88 > Email: laurent.excoff...@iee.unibe.ch > http://cmpg.iee.unibe.ch > > Computational Population Genetics > Swiss Institute of Bioinformatics (SIB) > http://www.isb-sib.ch/groups/Computational_Population_Genetics.htm > > -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140902200930.gb5...@an3as.eu
Re: Free source code of fastsimcoal2 available?
Hi, I'm very flattered that you think of including fastsimcoal2 in the Debian distribution, but unfortunately, the source code is not available best regards laurent On 02.09.2014 10:45, Andreas Tille wrote: Hi Laurent, I'm writing you on behalf of the Debian Med team which tries to assemble free software in biology inside the official Debian distribution. We have created Debian packages of several biological applications[1] and development tools[2]. When running the test suite of BioPython I realised that it has an interface to fastsimcoal2 and I had a look at its website[3]. Unfortunately I can find only binary downloads without source code there and no statement whether the source might be available or not. I wonder whether you might consider to release the code under a free license which would enable us to include fastsimcoal2 into Debian. Kind regards Andreas. [1] http://blends.debian.org/med/tasks/bio [2] http://blends.debian.org/med/tasks/bio-dev [3] http://cmpg.unibe.ch/software/fastsimcoal2/ -- Laurent Excoffier Computational and Molecular Population Genetics (CMPG) Institute of Ecology and Evolution, University of Bern 6, Baltzerstrasse, CH-3012 Bern, Switzerland Tel: +41 31 631 30 31 Fax: +41 31 631 48 88 Email: laurent.excoff...@iee.unibe.ch http://cmpg.iee.unibe.ch Computational Population Genetics Swiss Institute of Bioinformatics (SIB) http://www.isb-sib.ch/groups/Computational_Population_Genetics.htm -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/54061698.3020...@iee.unibe.ch
Re: r17823 - in trunk/packages/arb/trunk/debian: . conf patches source
Hi Andreas, > I would like to change you one thing: Lintian considers the upload an > NMU (non maintainer upload). Please make sure that your ID in > debian/control is identical to debian/changelog. I would have fixed > this but I don't know which one you prefer. fixed > PS: You might like to run > >lintian -i -I *.changes > > to see more issues I would tolerate for the moment but which > gives you an idea what else could be done. I fixed most. Here's what remains: > W: arb source: outdated-autotools-helper-file > GDE/PHYML20130708/phyml/config.guess 2012-02-10 > I: arb: spelling-error-in-binary usr/lib/arb/bin/phyml_20130708 ouput output These don't matter as phyml isn't built. Not sure how to turn them off. > I: arb-common: unused-debconf-template arb/group This either needs an override, or a change to arb-common.postinst so that lintian recognizes that arb/group is used. Alternatively, the arb group could be removed completely. Elmar -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/5405f7dc.60...@pruesse.net
Re: r17823 - in trunk/packages/arb/trunk/debian: . conf patches source
Hi Elmar, On Tue, Sep 02, 2014 at 04:17:52PM +0200, Elmar Pruesse wrote: > Hi Andreas! > > > Its fine to be verbose. I just separated our changes since it makes > > sense to reflect somehow the responsibility for the change. (That's why > > I suggested `dch -a` since it helps to add your own changed. ;-)) > > Sorry! I'd used dch, but forgotten "svn up". Please `svn up` again. :-) > So when I committed I had > to do a manual merge and thought you'd removed your part. I guess its fixed. > What's "cme fix dpkg-control" BTW? I would explain but I'm in a hurry right now. Check Debian Med policy document if you want to know. > > Thanks for your work on this > > Thanks for all you've done for ARB by taking care of the package! The > next releases should require less changes. I would like to change you one thing: Lintian considers the upload an NMU (non maintainer upload). Please make sure that your ID in debian/control is identical to debian/changelog. I would have fixed this but I don't know which one you prefer. Kind regards Andreas. PS: You might like to run lintian -i -I *.changes to see more issues I would tolerate for the moment but which gives you an idea what else could be done. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140902145107.ge30...@an3as.eu
Re: Updating the fis-gtm package to V6.1-000
Hi Andreas, I'm putting two threads back in one place. Look for [amul:6] below. The mail ends with the current list of TODOs. On 09/01/14 04:04, Andreas Tille wrote: Hi Amul, On Fri, Aug 29, 2014 at 08:14:03AM -0400, Amul Shah wrote: [amul:4] You asked in another mail if port 22 is blocked and it is. We have tools for allowed out-bound SSH connections but they don't work for git.debian.org. I'm guessing that host is disallowed for port 22 access. This is what I expected. There are ways to use different ports (preferably 443) but this is not really a packaging topic. If you can deal with this somehow we could take this issue as settled - otherwise we should discuss in a separate thread. Kind regards Andreas. [amul:6] Consider it closed. I'll search for ways around this. Consider this closed. On 09/01/14 04:05, Andreas Tille wrote: Hi Amul, On Fri, Aug 29, 2014 at 10:15:07AM -0400, Amul Shah wrote: [amul:5] I've surmounted the above issue. I don't completely follow everything, but I reverted the commit that merged the "upstream" (this is branch that existed only in my local copy as opposed to the branch from Alioth) and then re-ran git import-orig --pristin-tar. The build is in progress. I expect it to bomb out on the GPG issue (the keys are not on my corp laptop, most likely never will be). Well, you could create a fake key if this becomes boring to you. Thanks for keeping us updated Andreas. [amul:6] It works! :-) I returned this morning (Monday was a holiday in the US) to find git-buildpackage asking for the key's password. Entered it and packages were created! [amul:6] TODOs: - CMakeLists.txt for V6.1-000 does not build the encryption libraries. The builds work, but I need to (a) test the result, (b) create the patch for the debian package, (c) carry the build changes forward to the upstream release and lastly, (d) update the source README. - Fix the issue where the /opt/fis-gtm/current link points to the 32bit version of GT.M for the 64bit install - Allow i386 and x86_64 packages to coexist. Currently the packages conflict. Also ensure that users can install multiple GT.M versions. [amul:6] I'm working on the top bullet right now. I will follow up with questions - after searching :) - for the last two. Best Regards, Amul _ The information contained in this message is proprietary and/or confidential. If you are not the intended recipient, please: (i) delete the message and all copies; (ii) do not disclose, distribute or use the message in any manner; and (iii) notify the sender immediately. In addition, please be aware that any message addressed to our domain is subject to archiving and review by persons other than the intended recipient. Thank you. -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/5405d588.8070...@fisglobal.com
Re: r17823 - in trunk/packages/arb/trunk/debian: . conf patches source
Hi Andreas! > Its fine to be verbose. I just separated our changes since it makes > sense to reflect somehow the responsibility for the change. (That's why > I suggested `dch -a` since it helps to add your own changed. ;-)) Sorry! I'd used dch, but forgotten "svn up". So when I committed I had to do a manual merge and thought you'd removed your part. What's "cme fix dpkg-control" BTW? > Thanks for your work on this Thanks for all you've done for ARB by taking care of the package! The next releases should require less changes. best, Elmar -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/5405d190.4050...@pruesse.net
Re: Fremedforms 0.9.2 not on sourceforge yet (Was: r17893 - trunk/packages/freemedforms-project/trunk/debian)
Yes the sf redirector is out of date. 0.9.2 src and sig are correctly uploaded on sf. This is a know big of this redirector. I do not have workaround for this. Éric Le 2 sept. 2014 à 11:01, Andreas Tille a écrit : > Hi Eric, > > I get > > $ debian/rules get-orig-source > mkdir -p ../tarballs > uscan --verbose --force-download --destdir=../tarballs > -- Scanning for watchfiles in . > -- Found watchfile in ./debian > -- In debian/watch, processing watchfile line: > opts=pgpsigurlmangle=s/$/.sig/ > http://sf.net/freemedforms/freemedforms-project-src_(\d\S*)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) > uscan warning: In debian/watch, > no matching hrefs for watch line > > http://sf.net/freemedforms/freemedforms-project-src_(\d\S*)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) > -- Scan finished > debian/rules:114: recipe for target 'get-orig-source' failed > make: *** [get-orig-source] Error 1 > > > and sourceforge page[1] does not show a version 0.9.1. > > Kind regards > >Andreas. > > > [1] http://sourceforge.net/projects/freemedforms/files/FreeMedForms/ > > On Tue, Sep 02, 2014 at 07:00:24AM +, Eric Maeker wrote: >> Author: ericmaeker-guest >> Date: 2014-09-02 07:00:23 + (Tue, 02 Sep 2014) >> New Revision: 17893 >> >> Modified: >> trunk/packages/freemedforms-project/trunk/debian/changelog >> Log: >> freemedforms-project: closing bug about libquazip0 with v0.9.2 >> >> Modified: trunk/packages/freemedforms-project/trunk/debian/changelog >> === >> --- trunk/packages/freemedforms-project/trunk/debian/changelog2014-09-01 >> 14:01:17 UTC (rev 17892) >> +++ trunk/packages/freemedforms-project/trunk/debian/changelog2014-09-02 >> 07:00:23 UTC (rev 17893) >> @@ -13,14 +13,15 @@ >> * debian/*doc-base*;debian/*links >> - Correcting doc-base packages content >> - Removing symlinks >> + * debian/control: >> +- Updating build dependencies to the new libquazip-dev >> + Closes: #760236 >> >> -- Eric Maeker Sun, 31 Aug 2014 20:53:29 +0200 >> >> freemedforms-project (0.9.0-3) unstable; urgency=low >> >> * Correcting user's documentation installation path >> - * debian/control: >> -- Updating build dependencies to the new libquazip-dev >> * debian/rules;debian/control >> - Using qtchooser and QT_VERSION system var >> >> >> >> ___ >> debian-med-commit mailing list >> debian-med-com...@lists.alioth.debian.org >> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit > > -- > http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/de27234a-dc27-4c86-8b87-6c9b97b95...@gmail.com
Re: r17823 - in trunk/packages/arb/trunk/debian: . conf patches source
Hi Elmar, On Tue, Sep 02, 2014 at 03:28:45PM +0200, Elmar Pruesse wrote: > Hi Andreas, > > fixed. I chose to err on the side of detail, so maybe it needs shortening. Its fine to be verbose. I just separated our changes since it makes sense to reflect somehow the responsibility for the change. (That's why I suggested `dch -a` since it helps to add your own changed. ;-)) Thanks for your work on this Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140902140703.gd30...@an3as.eu
Re: r17823 - in trunk/packages/arb/trunk/debian: . conf patches source
Hi Andreas, fixed. I chose to err on the side of detail, so maybe it needs shortening. Elmar On 02.09.2014 14:36, Andreas Tille wrote: > Hi Elmar, > > On Thu, Aug 28, 2014 at 08:54:01PM +0200, Elmar Pruesse wrote: >> Hi Andreas! >> >> I've completed my TODOs and think the package is ready now. > > I noticed that the debian/changelog perfectly remained as I left it. > Could you please put a record of your main changes there preferably by > using `dch -a` and perhaps even put your ID in charge for this changelog > (simply replacing my ID in the end of the changelog paragraph). > > Kind regards and many thanks for your work on this > > Andreas. > -- Dr. Elmar Pruesse Max Planck Institute for Marine Microbiology Microbial Genomics Group Celsiusstrasse 1 | 28359 Bremen | Germany Jacobs University Bremen gGmbH School of Engineering & Science - SES Campus Ring 1 | 28759 Bremen | Germany Tel: +49 421 2028 984 Fax: +49 421 2028 580 http://www.arb-silva.de http://www.microbial-genomics.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/5405c60d.8050...@mpi-bremen.de
Re: r17823 - in trunk/packages/arb/trunk/debian: . conf patches source
Hi Elmar, On Thu, Aug 28, 2014 at 08:54:01PM +0200, Elmar Pruesse wrote: > Hi Andreas! > > I've completed my TODOs and think the package is ready now. I noticed that the debian/changelog perfectly remained as I left it. Could you please put a record of your main changes there preferably by using `dch -a` and perhaps even put your ID in charge for this changelog (simply replacing my ID in the end of the changelog paragraph). Kind regards and many thanks for your work on this Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140902123651.ga30...@an3as.eu
Re: Free source code of fastsimcoal2 available?
Hi Michael, On Tue, Sep 02, 2014 at 12:15:23PM +0300, Michael Crusoe wrote: > Andreas, I'm assuming you saw this: > https://groups.google.com/d/msg/fastsimcoal/4DGGkxlCKd0/Wp7US1Kq2M4J ? No, I just have seen that the test suite of BioPython suggest installing fastsimcoal and checked their website for source code but failed. > Lets hope for a change in policy! Either just hoping or even more asking. :-) Thanks for the hint Andreas. > On Tue, Sep 2, 2014 at 11:45 AM, Andreas Tille wrote: > > > Hi Laurent, > > > > I'm writing you on behalf of the Debian Med team which tries to assemble > > free software in biology inside the official Debian distribution. We > > have created Debian packages of several biological applications[1] and > > development tools[2]. When running the test suite of BioPython I > > realised that it has an interface to fastsimcoal2 and I had a look at > > its website[3]. Unfortunately I can find only binary downloads without > > source code there and no statement whether the source might be available > > or not. I wonder whether you might consider to release the code under a > > free license which would enable us to include fastsimcoal2 into Debian. > > > > Kind regards > > > > Andreas. > > > > [1] http://blends.debian.org/med/tasks/bio > > [2] http://blends.debian.org/med/tasks/bio-dev > > [3] http://cmpg.unibe.ch/software/fastsimcoal2/ > > > > -- > > http://fam-tille.de > > > > > > -- > > To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org > > with a subject of "unsubscribe". Trouble? Contact > > listmas...@lists.debian.org > > Archive: https://lists.debian.org/20140902084559.ge20...@an3as.eu > > > > -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140902114239.ga28...@an3as.eu
Re: Help needed with updating some Java libraries (netlib-java, libmtj-java)
Hi Tony, On Thu, Aug 28, 2014 at 05:38:01PM -0700, tony mancill wrote: > On 08/28/2014 07:01 AM, Andreas Tille wrote: > > Hi, > > > > when checking my Maintainer dashboard dashboard I realised that the > > watch file of netlib-java and libmtj-java became disfunctional and when > > tracking down the issue I noticed that both projects moved from SF to > > Github. While I updated the URLs in SVN accordingly I noticed that the > > Build system has changed as well which just crosses my (low) level of > > Java competence (again). > > > > Since both packages are definitely not really in the field of Debian Med > > but just preconditions for some biological package (beast) I wonder > > whether this might be the right point in time to move the package to > > Debian Java. I'd volunteer to inject the package into Debian Java Git > > but in turn I would need some help (starting with netlib-java). I have > > the feeling that the amount of work for a skilled Java packager is low > > (but I really would not regard myself as such a person). > > > > BTW, the packages are hanging around in contrib since netlib depends > > from f2j (at least the current version). I'll send a separate mail to > > f2j authors to try (again) to convince them to use a DFSG free license. > > > > Kind regards > > > > Andreas. > > > > Hello Andreas, > > If you're willing to migrate these to the pkg-java repo, I'll work on > updating them and uploading them as Java Team packages. I have migrated ssh://git.debian.org/git/pkg-java/libnetlib-java.git and ssh://git.debian.org/git/pkg-java/libmtj-java.git as well as injected the latest pristine-tar. Previous pristine-tar info is missing as well as all tags are lost. I do not feel that the missing tags is a real problem. I'd volunteer to inject them manually in case you would prefer this. > Also, I've been meaning to send you a mail regarding libsnappy-java, > since we have an RC bug there. The last commit makes it appear that you > were considering moving it debian-med in 2012. Is that still the case? I'll check and it would be fine to move it to pkg-java as well. Thanks for your offer to help Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140902100404.gg20...@an3as.eu
Re: Free source code of fastsimcoal2 available?
Andreas, I'm assuming you saw this: https://groups.google.com/d/msg/fastsimcoal/4DGGkxlCKd0/Wp7US1Kq2M4J ? Lets hope for a change in policy! On Tue, Sep 2, 2014 at 11:45 AM, Andreas Tille wrote: > Hi Laurent, > > I'm writing you on behalf of the Debian Med team which tries to assemble > free software in biology inside the official Debian distribution. We > have created Debian packages of several biological applications[1] and > development tools[2]. When running the test suite of BioPython I > realised that it has an interface to fastsimcoal2 and I had a look at > its website[3]. Unfortunately I can find only binary downloads without > source code there and no statement whether the source might be available > or not. I wonder whether you might consider to release the code under a > free license which would enable us to include fastsimcoal2 into Debian. > > Kind regards > > Andreas. > > [1] http://blends.debian.org/med/tasks/bio > [2] http://blends.debian.org/med/tasks/bio-dev > [3] http://cmpg.unibe.ch/software/fastsimcoal2/ > > -- > http://fam-tille.de > > > -- > To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org > with a subject of "unsubscribe". Trouble? Contact > listmas...@lists.debian.org > Archive: https://lists.debian.org/20140902084559.ge20...@an3as.eu > >
Fremedforms 0.9.2 not on sourceforge yet (Was: r17893 - trunk/packages/freemedforms-project/trunk/debian)
Hi Eric, I get $ debian/rules get-orig-source mkdir -p ../tarballs uscan --verbose --force-download --destdir=../tarballs -- Scanning for watchfiles in . -- Found watchfile in ./debian -- In debian/watch, processing watchfile line: opts=pgpsigurlmangle=s/$/.sig/ http://sf.net/freemedforms/freemedforms-project-src_(\d\S*)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) uscan warning: In debian/watch, no matching hrefs for watch line http://sf.net/freemedforms/freemedforms-project-src_(\d\S*)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) -- Scan finished debian/rules:114: recipe for target 'get-orig-source' failed make: *** [get-orig-source] Error 1 and sourceforge page[1] does not show a version 0.9.1. Kind regards Andreas. [1] http://sourceforge.net/projects/freemedforms/files/FreeMedForms/ On Tue, Sep 02, 2014 at 07:00:24AM +, Eric Maeker wrote: > Author: ericmaeker-guest > Date: 2014-09-02 07:00:23 + (Tue, 02 Sep 2014) > New Revision: 17893 > > Modified: >trunk/packages/freemedforms-project/trunk/debian/changelog > Log: > freemedforms-project: closing bug about libquazip0 with v0.9.2 > > Modified: trunk/packages/freemedforms-project/trunk/debian/changelog > === > --- trunk/packages/freemedforms-project/trunk/debian/changelog > 2014-09-01 14:01:17 UTC (rev 17892) > +++ trunk/packages/freemedforms-project/trunk/debian/changelog > 2014-09-02 07:00:23 UTC (rev 17893) > @@ -13,14 +13,15 @@ >* debian/*doc-base*;debian/*links > - Correcting doc-base packages content > - Removing symlinks > + * debian/control: > +- Updating build dependencies to the new libquazip-dev > + Closes: #760236 > > -- Eric Maeker Sun, 31 Aug 2014 20:53:29 +0200 > > freemedforms-project (0.9.0-3) unstable; urgency=low > >* Correcting user's documentation installation path > - * debian/control: > -- Updating build dependencies to the new libquazip-dev >* debian/rules;debian/control > - Using qtchooser and QT_VERSION system var > > > > ___ > debian-med-commit mailing list > debian-med-com...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit > -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140902090145.gf20...@an3as.eu
Free source code of fastsimcoal2 available?
Hi Laurent, I'm writing you on behalf of the Debian Med team which tries to assemble free software in biology inside the official Debian distribution. We have created Debian packages of several biological applications[1] and development tools[2]. When running the test suite of BioPython I realised that it has an interface to fastsimcoal2 and I had a look at its website[3]. Unfortunately I can find only binary downloads without source code there and no statement whether the source might be available or not. I wonder whether you might consider to release the code under a free license which would enable us to include fastsimcoal2 into Debian. Kind regards Andreas. [1] http://blends.debian.org/med/tasks/bio [2] http://blends.debian.org/med/tasks/bio-dev [3] http://cmpg.unibe.ch/software/fastsimcoal2/ -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140902084559.ge20...@an3as.eu
