Re: ncbi blast+ compilation error
Hi, just to let you know that your patch updates are fine and I could build the package There is still an issue I need to fix about embedded libraries (bzip2 and pcre3) and I should be able to push to experimental (waiting for en d of freeze). Thanks again Olivier Le Wed Dec 03 2014 at 6:37:04 AM, Aaron M. Ucko a écrit : > olivier sallou writes: > > > I have updated patches to the new version of blast+, however I have a > > compilation error. > > Thanks for working on packaging the latest release! I was able to get > the build to complete by means of two additions to > debian/patches/fix_lib_deps: > > * src/build-system/library_relations.txt: Change xblast's relation to > blast from includes to needs, per preexisting changes necessary to > avoid a circular dependency between xblast and xalgoblastdbindex. > > * src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib: > Add missing DLL_DLIB entries. > > NB: The latter change requires reinstating the use of Makefile.flat, > which my system had no trouble producing. However, my usual build > environment is anything but minimal, and I've been having some trouble > recreating a new minimal environment in which to investigate your > earlier report. If you're still having trouble producing Makefile.flat, > please send your build log. > > I'm attaching the version of fix_lib_deps that works for me. > > -- > Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) > http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/ > finger/?a...@monk.mit.edu > >
Re: r-cran-ape updated with the last upstream version - Need a sponsor to upload it
Hi Dylan, On Tue, Dec 09, 2014 at 06:53:46PM +0100, Dylan wrote: > Hi all, > I updated the r-cran-ape package with the last upstream version. Could you > check the package and upload it ? There are only small changes. Uploaded to experimental (due to freeze policy). Thanks for your work on this Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20141212144659.gc10...@an3as.eu
Re: Task for MRI (Magnetic Resonance Imaging) development
Hi Ghislain, thanks for your effort. On Mon, Dec 08, 2014 at 06:28:11PM +, Ghislain Vaillant wrote: > > >First of, does it sound silly ? > > > > not all +1 On the contrary it sounds really in line what we are doing. > > What would you call the task? what software would you like to list > > there? If to make just MRI specific task -- not sure. > > > > > There is indeed already a large collection of MRI tools in both imaging and > imaging-devel. I should have checked first. Then, I guess a specific task > for MRI is not really needed. Perhaps it makes more sense to split the imaging task a bit. Also a subset of the imaging task could be helpful for users. We are doing this in the general bio task as well where for instance bio-ngs is a subset for next generation sequencing. The principle is that anything that might be useful for users should be done. > > As for the packaging discussion place -- debian-med mailing list would > > indeed be a good venue ;) > > > Noted. I'll keep that in mind for my next contributions. :-) Since I sponsored quite some package of yours I wonder whether you might consider some of them good fits for the imaging and imaging-dev task. It does not matter in what team a package is maintained - anything can be put in our tasks files. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20141212142915.gb10...@an3as.eu
Re: ImageJ plugin for Orthanc
Hi Sebastien, sorry for my silence for longer than usual. I'm recovering slowly from my vacation (basically for the sake of OpenStreetMap work after the trip ;-)). On Tue, Dec 09, 2014 at 10:16:57AM +0100, Sebastien Jodogne wrote: > Hi Andreas, > > >thanks for your work but can you please commit to SVN as you did with > >orthanc. There is no point in sending code that belongs to VCS via > >mail. > > Sorry for the corrupted mail, I thought I was not allowed to create > new packages into the SVN. I have just managed to push the initial > version of the "orthanc-imagej" package [1]. > > I have tested the build against chroot and lintian, and everything > seems OK. Let me know whether something should be fixed. I had a look into the package. It builds fine and is lintian clean and I simply assume that it is working (I have no idea how I could personally test). However, the source contains a code copy of the package libjson-simple-java which should be avoided. Could you imagine to rather "link" (I think linking is not the proper term in the Java world) against this library rather than using the code copy. I'm quite confident that you can get help for this at debian-j...@lists.debian.org. To be really sure that the code copy is not used I'd recommend to use Files-Excluded in d/copyright. Feel free to ask if something remains unclear and please be patient with my slow response time. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20141212142310.ga10...@an3as.eu
Re: DebianMed Sprint network issue
On Fri, Dec 12, 2014 at 01:35:27PM +0100, olivier.sal...@codeless.fr wrote: > > Can they specify "too far" in numbers of meters? I can not really believe > > this. > I think the issue is not the length but where is the "internet box" to > pull a cable (if upstairs...) Pff. The DebConf network team has pulled wires and has setup wifi in 2008 in a 5* hotel in Argentina[1] for about 250 participants and last year a camp with different houses was connected from scratch last year in Switzerland (DebConf 13). I know that Arne Wichmann was involved and perhaps I can ask him for hints what to do and how to convince hotel owners (they do also have soft skills not only technical skills ;-)). > I talked with the owner, and I will go to the hotel to try to setup a > wifi router myself and check connectivity in the room we will use (as > well as power lan if I can get one for a try). Sounds promising but if not we should ask DebConf people for further help. Kind regards Andreas. [1] http://debconf8.debconf.org/hotels.xhtml.en -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20141212131657.gf29...@an3as.eu
Re: DebianMed Sprint network issue
Hi all, I'm just wondering if Sascha's idea wouldn't be the least complicated one? When he posted, I thought the problem had been solved. Seems like a lot of hassle you guys are going through to get htis sorted. Best, Jorge On Fri, Dec 12, 2014 at 12:35 PM, olivier.sal...@codeless.fr < olivier.sal...@codeless.fr> wrote: > > > On 12/12/2014 11:36 AM, Andreas Tille wrote: > > Hi, > > > > On Fri, Dec 12, 2014 at 09:48:00AM +0100, olivier.sal...@codeless.fr > wrote: > >>> If it helps I can send you a pair of PowerLAN adapters. > >> I tried to propose this solution but it seems that their box is too far > >> from the room for a cable. > > ??? > > Can they specify "too far" in numbers of meters? I can not really > believe > > this. > I think the issue is not the length but where is the "internet box" to > pull a cable (if upstairs...) > > I talked with the owner, and I will go to the hotel to try to setup a > wifi router myself and check connectivity in the room we will use (as > well as power lan if I can get one for a try). > > Olivier > > > >> I did not think about powerlans, it may be a solution, though I should > >> test this. I gonna investigate this point > > Sounds good. > > > > And as I incidently send only in PM: I'll bring my UMTS hub in any case. > > > > Kind regards > > > > Andreas. > > > > > > -- > > gpg key id: 4096R/326D8438 (keyring.debian.org) > > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 > > > -- > To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org > with a subject of "unsubscribe". Trouble? Contact > listmas...@lists.debian.org > Archive: https://lists.debian.org/548ae10f.3030...@codeless.fr > >
Re: DebianMed Sprint network issue
On 12/12/2014 11:36 AM, Andreas Tille wrote: > Hi, > > On Fri, Dec 12, 2014 at 09:48:00AM +0100, olivier.sal...@codeless.fr wrote: >>> If it helps I can send you a pair of PowerLAN adapters. >> I tried to propose this solution but it seems that their box is too far >> from the room for a cable. > ??? > Can they specify "too far" in numbers of meters? I can not really believe > this. I think the issue is not the length but where is the "internet box" to pull a cable (if upstairs...) I talked with the owner, and I will go to the hotel to try to setup a wifi router myself and check connectivity in the room we will use (as well as power lan if I can get one for a try). Olivier > >> I did not think about powerlans, it may be a solution, though I should >> test this. I gonna investigate this point > Sounds good. > > And as I incidently send only in PM: I'll bring my UMTS hub in any case. > > Kind regards > > Andreas. > > > -- > gpg key id: 4096R/326D8438 (keyring.debian.org) > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/548ae10f.3030...@codeless.fr
Re: DebianMed Sprint network issue
Hi, On Fri, Dec 12, 2014 at 09:48:00AM +0100, olivier.sal...@codeless.fr wrote: > >> > > If it helps I can send you a pair of PowerLAN adapters. > I tried to propose this solution but it seems that their box is too far > from the room for a cable. ??? Can they specify "too far" in numbers of meters? I can not really believe this. > I did not think about powerlans, it may be a solution, though I should > test this. I gonna investigate this point Sounds good. And as I incidently send only in PM: I'll bring my UMTS hub in any case. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20141212103628.gc29...@an3as.eu
Re: DebianMed Sprint network issue
On 12/11/2014 04:09 PM, Andreas Tille wrote: > Hi Olivier, > > On Thu, Dec 11, 2014 at 12:29:12PM +, olivier sallou wrote: >> Hi, >> I just talked with the hotel and they still have wifi access issues (though >> it was supposed to be solved). So it is almost plain sure that wifi won't >> be accessible. > :-( > No Wifi or not even internet (via LAN) ? > >> One solution could be a 3G / Wifi router with a 3G data card, has anyone >> experienced this ? >> > I'm using a > > > http://www.amazon.de/Huawei-E5220-WLAN-Router-WLAN-Zug%C3%A4nge-Boot-Zeit-wei%C3%9F/dp/B00DI7HPAU/ref=sr_1_1 > > quite frequently (tested with three clients connected at the same time). > I can bring this but I have no French SIM card to use. I can get one (at least mine, but I can see to get an other one). I could buy a card with 4Go of data. Though I gonna investigate any other solution, can you please come with your router, at least as a backup solution. I will manage the SIM card. Thanks > > Kind regards > > Andreas. > > > -- > gpg key id: 4096R/326D8438 (keyring.debian.org) > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/548aac2f.9040...@codeless.fr
Re: DebianMed Sprint network issue
On 12/11/2014 05:48 PM, Sebastian Hilbert wrote: > Am Donnerstag, 11. Dezember 2014, 17:33:44 schrieb Karsten Hilbert: >> On Thu, Dec 11, 2014 at 04:09:34PM +0100, Andreas Tille wrote: I just talked with the hotel and they still have wifi access issues (though it was supposed to be solved). So it is almost plain sure that wifi won't be accessible. >>> : >>> :-( >>> >>> No Wifi or not even internet (via LAN) ? >> Since the (try to) provide Wifi access on their premises they >> "must" have some other means to get connectivity into their >> hotel in the first place. >> >> Might it be possible to persuade them to let you guys plug in >> your own wlan repeater or even route a very long LAN cable >> from their inhouse hub to your switch in the conference room ? >> > If it helps I can send you a pair of PowerLAN adapters. I tried to propose this solution but it seems that their box is too far from the room for a cable. I did not think about powerlans, it may be a solution, though I should test this. I gonna investigate this point Thanks Olivier > > Sebastian > > > > -- > gpg key id: 4096R/326D8438 (keyring.debian.org) > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/548aabc0.4060...@codeless.fr
