Re: Maybe sponsor package under debian-med umbrella?
Hi Benjamin, thanks for contacting the Debian Med team. On Tue, Mar 06, 2018 at 04:12:23PM -0500, Benjamin Redelings wrote: > I see that many bioinformatics programs such as muscle, mafft, and fsa > (alignment) and mrbayes, beast-mcmc, and phyml (phylogenetics), etc. are > maintained by the "Debian Med Packaging Team". That's correct. > I uploaded a package for > bali-phy (which does simultaneous alignment) to mentors.debian.net. > (Disclaimer: I am the author). I was originally planning to try to maintain > this on my own, but (supposing people are interesting in this package) would > the Debian Med team be a better structure? Definitely. The Debian Med team has evolved to a strong group of people interested in bioinformatics. Upstream authors are more than welcome to maintain their packages inside the team. > Many of the programs that I use (such as figtree) are available in > Debian now, but a few (e.g. tracer: > http://tree.bio.ed.ac.uk/software/tracer/, So we should probably package tracer. > canu: > https://github.com/marbl/canu) are not. Canu is packaged but not yet available in any release yet. We might consider a backport to stretch if this is helpful for you. You can get a full overview about all available packages in the so called "task biology" (we have other tasks like biology-dev for development, medical imaging and others). Here is the deep link to canu[1] > I would probably be interested in > packaging tracer. Like figtree, it is a java program, and it is by the same > authors, so I presume I could use the figtree package as a template. > > Thoughts? The best idea would be you register on the new development platform https://salsa.debian.org and ask for beeing added to the Debian Med team. Once your application is accepted please create a Git repository for bali-phy there and somebody of our team will take over the sponsoring. Kind regards Andreas. [1] https://blends.debian.org/med/tasks/bio#canu -- http://fam-tille.de
Re: RFS: jheatchart -- Heat map charting library for Java
Done, thanks for your work on this. Andreas. On Tue, Mar 06, 2018 at 09:55:47PM +0100, Dylan Aïssi wrote: > Hi, > > Could someone upload it? Thanks. > > Best, > Dylan > > > Package name: jheatchart > URL: http://www.javaheatmap.com/ > License: LGPL-3+ > Description: Heat map charting library for Java > The JHeatChart library provides a simple API for generating Java heat maps. > Output heat maps as .png, .jpg or .gif images. Generate Image objects for > further processing. Show generated Image in a Swing JPanel. Fully > customisable > colours, dimensions, fonts etc. Linear, logarithmic and exponential > colour scales. > > This is a dependency of ChromHMM. This package will be maintained by > the Debian Med Packaging Team at: > https://salsa.debian.org/med-team/jheatchart.git > > -- http://fam-tille.de
Maybe sponsor package under debian-med umbrella?
Hi, I see that many bioinformatics programs such as muscle, mafft, and fsa (alignment) and mrbayes, beast-mcmc, and phyml (phylogenetics), etc. are maintained by the "Debian Med Packaging Team". I uploaded a package for bali-phy (which does simultaneous alignment) to mentors.debian.net. (Disclaimer: I am the author). I was originally planning to try to maintain this on my own, but (supposing people are interesting in this package) would the Debian Med team be a better structure? Many of the programs that I use (such as figtree) are available in Debian now, but a few (e.g. tracer: http://tree.bio.ed.ac.uk/software/tracer/, canu: https://github.com/marbl/canu) are not. I would probably be interested in packaging tracer. Like figtree, it is a java program, and it is by the same authors, so I presume I could use the figtree package as a template. Thoughts? -BenRI
RFS: jheatchart -- Heat map charting library for Java
Hi, Could someone upload it? Thanks. Best, Dylan Package name: jheatchart URL: http://www.javaheatmap.com/ License: LGPL-3+ Description: Heat map charting library for Java The JHeatChart library provides a simple API for generating Java heat maps. Output heat maps as .png, .jpg or .gif images. Generate Image objects for further processing. Show generated Image in a Swing JPanel. Fully customisable colours, dimensions, fonts etc. Linear, logarithmic and exponential colour scales. This is a dependency of ChromHMM. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/jheatchart.git
Re: cwltool removed from unstable, new uploads are being ignored
Hi Michael, On 3/5/18 3:07 PM, Michael Crusoe wrote: https://packages.debian.org/search?keywords=cwltool Hey all, I just noticed that cwltool is no longer in unstable. Any hints as to why this happened? I can't find any bug report requesting its removal either: https://bugs.debian.org/cgi-bin/pkgreport.cgi?archive=both;dist=unstable;include=subject%3Acwltool;package=ftp.debian.org Seems rather rude to do without notification.. https://packages.qa.debian.org/c/cwltool.html Maybe you get a reply in reaction to your upload on hash sum difficulties or whatever into your spam folder? Looks all normal. Steffen
