Hmmer2 fork / enhancements (Was: Is my post making it to the mailing list?)

2019-01-03 Thread Andreas Tille
Hi Joshua,

On Thu, Jan 03, 2019 at 04:45:33PM -0500, Joshua Marshall wrote:
> Is now a better time to bring up my Hmmer 2 fork?

Please shortly describe the purpose of your fork the changes you
did on the list and than we can (probably/hopefully) replace the
existing hmmer2 package by your fork.  I'm *not* a hmmer2 user
(nor do I have the slightest idea what hmmer2 is doing - I'm not
a biologist) so it makes no sense to discuss this just with me.
Thus I'm posting this on the list.

For other readers here are some links to previous posts about
this issue:

  
https://alioth-lists.debian.net/pipermail/debian-med-packaging/2018-October/066203.html
  
https://alioth-lists.debian.net/pipermail/debian-med-packaging/2018-October/066757.html
  
https://alioth-lists.debian.net/pipermail/debian-med-packaging/2018-October/066762.html
  
https://alioth-lists.debian.net/pipermail/debian-med-packaging/2018-November/066997.html

My prefered way to deal with this would be to point the debian/watch
file of hmmer2 to

  https://github.com/anadon/hmmer2/releases

and package the latest release from there (instead of applying huge
patches that nobody can read or maintain) but please document the
relation to the official hmmer2, your fork/continuation and hmmer3
at an easily accessible place.

Kind regards

Andreas.

> On Sun, Oct 28, 2018 at 4:47 PM jrmarsha  wrote:
> 
> > I'm sorry.
> >
> > On 10/28/18 4:15 PM, Andreas Tille wrote:
> > > Hi,
> > >
> > > the list is archived:
> > >
> > >  https://lists.debian.org/debian-med/2018/10/threads.html
> > >
> > > Please do not expect always prompt responses - sometimes volunteers
> > > have other things to do.
> > >
> > > Kind regards
> > >
> > > Andreas.
> > >
> > > On Sun, Oct 28, 2018 at 09:03:27AM -0400, jrmarsha wrote:
> > >> Hello,
> > >>
> > >>
> > >> I've tried sending a few messages but I've gotten no response. Are they
> > >> making it to the debian-med mailing list.
> > >>
> > >>
> >

-- 
http://fam-tille.de



Bug#918117: RM: python-htseq-doc/0.6.1p1-4

2019-01-03 Thread Michael R. Crusoe
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: rm

Hello,

Please remove python-htseq-doc from the testing distribution. It is no
longer build by the source package and its presence is blocking a migration
from unstable.

Thanks!

-- System Information:
Debian Release: 9.6
  APT prefers stable
  APT policy: (500, 'stable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.14.0-0.bpo.2-amd64 (SMP w/4 CPU cores)
Locale: LANG=ro_RO.utf8, LC_CTYPE=ro_RO.utf8 (charmap=UTF-8), 
LANGUAGE=ro_RO.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)