Re: Request for Sponsorship libsys-info{-driver-linux,}-perl
On Tue, 07 Jan 2020 16:18:52 +0100, Andreas Tille wrote: > On Tue, Jan 07, 2020 at 04:01:48PM +0100, Michael Crusoe wrote: > > Heh, thanks gregor! > > That's odd that I wasn't able to find these package earlier, sorry for the > > noise! > ... and sorry for not checking as sponsor ... No worries, there was no harm done. Michael, would you want to join the perl team? It seems that you are sometimes working on med/science related perl stuff; being in both teams might make this easier. Cheers, gregor -- .''`. https://info.comodo.priv.at -- Debian Developer https://www.debian.org : :' : OpenPGP fingerprint D1E1 316E 93A7 60A8 104D 85FA BB3A 6801 8649 AA06 `. `' Member VIBE!AT & SPI Inc. -- Supporter Free Software Foundation Europe `- NP: Vieja Trova Santiaguera: Mil Gracias signature.asc Description: Digital Signature
Re: Request for Sponsorship libsys-info{-driver-linux,}-perl
BTW, I just removed the repositories under med-team from salsa. On Tue, Jan 07, 2020 at 04:18:52PM +0100, Andreas Tille wrote: > On Tue, Jan 07, 2020 at 04:01:48PM +0100, Michael Crusoe wrote: > > Heh, thanks gregor! > > > > That's odd that I wasn't able to find these package earlier, sorry for the > > noise! > > ... and sorry for not checking as sponsor ... ... -- http://fam-tille.de
Re: request for upload permissions libbio-db-swissprot-perl
Done On 01.01.20 14:18, Michael Crusoe wrote: dcut dm --uid 724D609337113C710550D7473C26763F6C67E6E2 --allow libbio-db-swissprot-perl
Re: debianmed sprint hotel
Hi all, > has anyone made an hotel choice for the sprint so that we can start > reservertions to be together if possible? FYI, here are some recommendations (from our wiki): - Within walking distance: https://www.google.com/maps/place/Hotel+Sch%C3%B6neberg/@52.4838617,13.3538017,17.5z/data=!4m8!3m7!1s0x0:0x7cbdc6094eb22597!5m2!4m1!1i2!8m2!3d52.4849925!4d13.3545083 - Few S-Bahn stations away: https://www.google.com/maps/place/Hotel+Novotel+Suites+Berlin+City+Potsdamer+Platz/@52.5048022,13.3817308,16.54z/data=!4m8!3m7!1s0x0:0x1c4720a47f155c71!5m2!4m1!1i2!8m2!3d52.50457!4d13.38312 and others in the area - On campus: https://euref.de/en/euref-campus_en/campus-life/#overnight (only few spaces available, might go quickly) Cheers Sascha
Re: Request for Sponsorship libsys-info{-driver-linux,}-perl
On Tue, Jan 07, 2020 at 04:01:48PM +0100, Michael Crusoe wrote: > Heh, thanks gregor! > > That's odd that I wasn't able to find these package earlier, sorry for the > noise! ... and sorry for not checking as sponsor ... > On Tue, Jan 7, 2020 at 3:42 PM gregor herrmann wrote: > > > On Tue, 07 Jan 2020 15:33:56 +0100, Andreas Tille wrote: > > > > > On Tue, Jan 07, 2020 at 01:45:11PM +0100, Michael Crusoe wrote: > > > > gbp clone g...@salsa.debian.org: > > med-team/libsys-info-driver-linux-perl.git > > > > gbp clone g...@salsa.debian.org:med-team/libsys-info-perl.git > > > > Somehow these names ring a bell … > > > > Ah yes: > > > > https://salsa.debian.org/perl-team/modules/packages?utf8=%E2%9C%93&filter=libsys-info > > vs. > > https://salsa.debian.org/med-team?filter=libsys-info > > > > And tracker: > > https://tracker.debian.org/pkg/libsys-info-perl > > "ITP: Someone is planning to reintroduce this package." > > #948330 > > > > https://tracker.debian.org/pkg/libsys-info-driver-linux-perl > > "ITP: Someone is planning to reintroduce this package." > > #948329 > > > > > > Currently we patch around these for bowtie, but it would be nice to not > > > > have to. > > > Uploaded. > > > > Looking at the version in d/changelog in the 2 packages in the > > debian-med repos, the uploads will probably be rejected (as the > > perl-teams packages have higher versions) > > > > > However, I'd love to see these maintained by Debian Perl team > > > (in CC) - may be it can be moved there once ftpmaster might have accepted > > > and when the source-only upload will be done. > > > > Well, actually your wish is already fulfilled :) > > > > > > Cheers, > > gregor > > > > -- > > .''`. https://info.comodo.priv.at -- Debian Developer > > https://www.debian.org > > : :' : OpenPGP fingerprint D1E1 316E 93A7 60A8 104D 85FA BB3A 6801 8649 > > AA06 > > `. `' Member VIBE!AT & SPI Inc. -- Supporter Free Software Foundation > > Europe > >`- BOFH excuse #384: it's an ID-10-T error > > > > > -- > Michael R. Crusoe -- http://fam-tille.de
Re: Request for Sponsorship libsys-info{-driver-linux,}-perl
On Tue, 07 Jan 2020 15:33:56 +0100, Andreas Tille wrote: > On Tue, Jan 07, 2020 at 01:45:11PM +0100, Michael Crusoe wrote: > > gbp clone g...@salsa.debian.org:med-team/libsys-info-driver-linux-perl.git > > gbp clone g...@salsa.debian.org:med-team/libsys-info-perl.git Somehow these names ring a bell … Ah yes: https://salsa.debian.org/perl-team/modules/packages?utf8=%E2%9C%93&filter=libsys-info vs. https://salsa.debian.org/med-team?filter=libsys-info And tracker: https://tracker.debian.org/pkg/libsys-info-perl "ITP: Someone is planning to reintroduce this package." #948330 https://tracker.debian.org/pkg/libsys-info-driver-linux-perl "ITP: Someone is planning to reintroduce this package." #948329 > > Currently we patch around these for bowtie, but it would be nice to not > > have to. > Uploaded. Looking at the version in d/changelog in the 2 packages in the debian-med repos, the uploads will probably be rejected (as the perl-teams packages have higher versions) > However, I'd love to see these maintained by Debian Perl team > (in CC) - may be it can be moved there once ftpmaster might have accepted > and when the source-only upload will be done. Well, actually your wish is already fulfilled :) Cheers, gregor -- .''`. https://info.comodo.priv.at -- Debian Developer https://www.debian.org : :' : OpenPGP fingerprint D1E1 316E 93A7 60A8 104D 85FA BB3A 6801 8649 AA06 `. `' Member VIBE!AT & SPI Inc. -- Supporter Free Software Foundation Europe `- BOFH excuse #384: it's an ID-10-T error
Re: Request for Sponsorship libsys-info{-driver-linux,}-perl
Heh, thanks gregor! That's odd that I wasn't able to find these package earlier, sorry for the noise! On Tue, Jan 7, 2020 at 3:42 PM gregor herrmann wrote: > On Tue, 07 Jan 2020 15:33:56 +0100, Andreas Tille wrote: > > > On Tue, Jan 07, 2020 at 01:45:11PM +0100, Michael Crusoe wrote: > > > gbp clone g...@salsa.debian.org: > med-team/libsys-info-driver-linux-perl.git > > > gbp clone g...@salsa.debian.org:med-team/libsys-info-perl.git > > Somehow these names ring a bell … > > Ah yes: > > https://salsa.debian.org/perl-team/modules/packages?utf8=%E2%9C%93&filter=libsys-info > vs. > https://salsa.debian.org/med-team?filter=libsys-info > > And tracker: > https://tracker.debian.org/pkg/libsys-info-perl > "ITP: Someone is planning to reintroduce this package." > #948330 > > https://tracker.debian.org/pkg/libsys-info-driver-linux-perl > "ITP: Someone is planning to reintroduce this package." > #948329 > > > > Currently we patch around these for bowtie, but it would be nice to not > > > have to. > > Uploaded. > > Looking at the version in d/changelog in the 2 packages in the > debian-med repos, the uploads will probably be rejected (as the > perl-teams packages have higher versions) > > > However, I'd love to see these maintained by Debian Perl team > > (in CC) - may be it can be moved there once ftpmaster might have accepted > > and when the source-only upload will be done. > > Well, actually your wish is already fulfilled :) > > > Cheers, > gregor > > -- > .''`. https://info.comodo.priv.at -- Debian Developer > https://www.debian.org > : :' : OpenPGP fingerprint D1E1 316E 93A7 60A8 104D 85FA BB3A 6801 8649 > AA06 > `. `' Member VIBE!AT & SPI Inc. -- Supporter Free Software Foundation > Europe >`- BOFH excuse #384: it's an ID-10-T error > -- Michael R. Crusoe
Re: Request for Sponsorship libsys-info{-driver-linux,}-perl
On Tue, Jan 07, 2020 at 01:45:11PM +0100, Michael Crusoe wrote: > gbp clone g...@salsa.debian.org:med-team/libsys-info-driver-linux-perl.git > gbp clone g...@salsa.debian.org:med-team/libsys-info-perl.git > > Currently we patch around these for bowtie, but it would be nice to not > have to. Uploaded. However, I'd love to see these maintained by Debian Perl team (in CC) - may be it can be moved there once ftpmaster might have accepted and when the source-only upload will be done. Thanks for your work on this, Andreas. -- http://fam-tille.de
libbio-variation-perl_1.7.5-1_source.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Tue, 07 Jan 2020 14:27:05 +0100 Source: libbio-variation-perl Architecture: source Version: 1.7.5-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Team Changed-By: Michael R. Crusoe Changes: libbio-variation-perl (1.7.5-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 7a0f7c286ffbdc54d1e9691915a5a399f7e6fd3c 2241 libbio-variation-perl_1.7.5-1.dsc 72fd802799ca83cf4a900710f09cd252dc59f665 60430 libbio-variation-perl_1.7.5.orig.tar.gz 25acfb1c31d11319f2a8e4f67145b98d04eaeb7f 1804 libbio-variation-perl_1.7.5-1.debian.tar.xz a7011b1766a5f58f7c3b720184bc821a17814a6d 6869 libbio-variation-perl_1.7.5-1_source.buildinfo Checksums-Sha256: 174457b8536ef2a5877e737e47780446920c87966d7396275f9c64c5d11d2c69 2241 libbio-variation-perl_1.7.5-1.dsc 4bffdd060b5e793919f700e46056eb3f0195ed4df2e60ad68b383c31e51f824f 60430 libbio-variation-perl_1.7.5.orig.tar.gz 61bfb0f07a7da7c7310db70ea7e326f2037f662f1069a538ba69f53597fc7839 1804 libbio-variation-perl_1.7.5-1.debian.tar.xz 954b2409c062571e0a73acf4cf8afe785a3a5765c9cbe83d3aabcee64ed0e038 6869 libbio-variation-perl_1.7.5-1_source.buildinfo Files: 03717cd887bacb254c9b5d97ff48ec3e 2241 perl optional libbio-variation-perl_1.7.5-1.dsc 8495ecbaf4392ecd6d1d56127b4111a3 60430 perl optional libbio-variation-perl_1.7.5.orig.tar.gz 8b0556d6f6935ae85c76e35d86e1bab9 1804 perl optional libbio-variation-perl_1.7.5-1.debian.tar.xz 6627f32b5aa1230eb0931ecc6a8bd20f 6869 perl optional libbio-variation-perl_1.7.5-1_source.buildinfo -BEGIN PGP SIGNATURE- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl4Uh8kACgkQPCZ2P2xn 5uLU9g/8Crt9XWN9IgDalbHrcTohyOMx27ZCiZJWFsyyS4ItPoJlFRY+iPyWCuyJ v+ClEihAvvzerXydYYmUPvhlvibEFkhqkKKtH7KWwSCiqXgKWqyAZVfL/PFoG0S6 dOdLVDwJbZvJB6sc4/TkBXQ9bSKFsUXpxRRaWwLjbAEYcUgsaZBHJYN4WOcL+Hgb RzV+oH7skm6QfXGsOn/+Drm9C9/uOPJoMHvuOQnhHCkZibnR6QsQRKIWkIVrESVr 6cvvLq+C9v49078t9waqRfiirlf5hz+vX66m5O76NPvbgn7zutEJ2kp4XbXLUrgY DDur0KMegplr1efAQJHbjhtNgEIW1liMq0GEFsRMdngbfbg2C9CyzVauWF7iTEwd ZwzaUhjy4aDncqGw/D8Di2bAEtbGfC9OpAlpgExzXYBqGdYbbVwqnFWxEnSKrRwA pl25BFL7v2R0Hm4rie0ieUVIQtyXykt0yYYnz0Ya7j31D8UubbxHIXLlkni+ONgV M+S3eH/U0EtfgZ9avxAxWRLpthwaJ5hID9NRHg6xzqV1ONkuAh1tiN+PNYL11gv1 dqGTWgNo3aLv72B/qHmLaG6+Rs5Kp7MhySz8NIcOg8T8TVTqOmtrBd+cW71PTFIm /IkXdm3LoSuM4jM7WE/DloklKOpkR1yq0dDnqovgR5qmbIacCtE= =YP6o -END PGP SIGNATURE- Thank you for your contribution to Debian.
Processing of libbio-variation-perl_1.7.5-1_source.changes
libbio-variation-perl_1.7.5-1_source.changes uploaded successfully to localhost along with the files: libbio-variation-perl_1.7.5-1.dsc libbio-variation-perl_1.7.5.orig.tar.gz libbio-variation-perl_1.7.5-1.debian.tar.xz libbio-variation-perl_1.7.5-1_source.buildinfo Greetings, Your Debian queue daemon (running on host usper.debian.org)
Request for Sponsorship libsys-info{-driver-linux,}-perl
gbp clone g...@salsa.debian.org:med-team/libsys-info-driver-linux-perl.git gbp clone g...@salsa.debian.org:med-team/libsys-info-perl.git Currently we patch around these for bowtie, but it would be nice to not have to. Thanks! -- Michael R. Crusoe
Bug#948330: ITP: libsys-info-perl -- Fetch information from the host system
Package: wnpp Severity: wishlist Subject: ITP: libsys-info-perl -- Fetch information from the host system Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libsys-info-perl Version : 0.7811 Upstream Author : , Burak Gursoy * URL : https://metacpan.org/release/Sys-Info * License : Artistic Programming Lang: Perl Description : Fetch information from the host system Extracts and collects information from the host system. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/libsys-info-perl
Re: Request for sponsorship: libbio-featureio-perl
On Tue, Jan 07, 2020 at 12:45:30PM +0100, Michael Crusoe wrote: > gbp clone g...@salsa.debian.org:med-team/libbio-featureio-perl.git Done. Thanks for your work on this. > Needed for bioperl-run Thanks for caring for bioperl-run Andreas. -- http://fam-tille.de
Bug#948329: ITP: libsys-info-driver-linux-perl -- Linux driver for Sys::Info
Package: wnpp Severity: wishlist Subject: ITP: libsys-info-driver-linux-perl -- Linux driver for Sys::Info Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libsys-info-driver-linux-perl Version : 0.7905 Upstream Author : , Burak Gursoy * URL : https://metacpan.org/release/Sys-Info-Driver-Linux * License : Artistic Programming Lang: Perl Description : Linux driver for Sys::Info This is the main module in the Linux driver collection. Remark: This package is maintained by Michael R. Crusoe at https://salsa.debian.org/med-team/libsys-info-driver-linux-perl
Re: Request for sponsorship: libbio-featureio-perl
Thank you, Andreas Tille! On Tue, Jan 7, 2020 at 12:45 PM Michael Crusoe wrote: > gbp clone g...@salsa.debian.org:med-team/libbio-featureio-perl.git > > Needed for bioperl-run > > Thanks! > -- > Michael R. Crusoe > -- Michael R. Crusoe
Request for sponsorship: libbio-featureio-perl
gbp clone g...@salsa.debian.org:med-team/libbio-featureio-perl.git Needed for bioperl-run Thanks! -- Michael R. Crusoe
Bug#948325: ITP: libbio-featureio-perl -- Modules for reading, writing, and manipulating sequence features
Package: wnpp Severity: wishlist Subject: ITP: libbio-featureio-perl -- Modules for reading, writing, and manipulating sequence features Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-featureio-perl Version : 1.6.905 Upstream Author : BioPerl Team * URL : https://metacpan.org/release/Bio-FeatureIO * License : Artistic Programming Lang: (C, C++, C#, Perl, Python, etc.) Description : Modules for reading, writing, and manipulating sequence features An I/O iterator subsystem for genomic sequence features. . Bio::FeatureIO is a handler module for the formats in the FeatureIO set (eg, Bio::FeatureIO::GFF). It is the officially sanctioned way of getting at the format objects, which most people should use. . The Bio::FeatureIO system can be thought of like biological file handles. They are attached to filehandles with smart formatting rules (eg, GFF format, or BED format) and can either read or write feature objects (Bio::SeqFeature objects, or more correctly, Bio::FeatureHolderI implementing objects, of which Bio::SeqFeature is one such object). If you want to know what to do with a Bio::SeqFeatureI object, read Bio::SeqFeatureI. . The idea is that you request a stream object for a particular format. All the stream objects have a notion of an internal file that is read from or written to. A particular FeatureIO object instance is configured for either input or output. A specific example of a stream object is the Bio::FeatureIO::gff object. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/libbio-featureio-perl
