Re: Request for sponsorship: seqan3_3.0.1+ds-6~bpo10+1

2020-02-04 Thread Andreas Tille
Done. Please note that I renamed the branch

   debian/buster -> debian/buster-backports

Kind regards

   Andreas.

On Mon, Feb 03, 2020 at 04:14:21PM +0100, Michael Crusoe wrote:
> Thanks!
> 
> --
> Michael R. Crusoe
> 
> -- Forwarded message -
> From: Debian FTP Masters 
> Date: Mon, Feb 3, 2020, 15:42
> Subject: seqan3_3.0.1+ds-6~bpo10+1_source.changes REJECTED
> To: Michael R. Crusoe , Debian Med Packaging Team
> 
> 
> 
> 
> 
> ACL dm: NEW uploads are not allowed
> 
> binary:libseqan3-dev is NEW.
> binary:seqan3-doc is NEW.
> source:seqan3 is NEW.
> 
> ===
> 
> Please feel free to respond to this email if you don't understand why
> your files were rejected, or if you upload new files which address our
> concerns.

-- 
http://fam-tille.de



Re: Request for sponsorship: seqan3_3.0.1+ds-6~bpo10+1

2020-02-04 Thread Michael Crusoe
Thanks!

On Tue, Feb 4, 2020 at 6:49 PM Andreas Tille  wrote:

> Done. Please note that I renamed the branch
>
>debian/buster -> debian/buster-backports
>
> Kind regards
>
>Andreas.
>
> On Mon, Feb 03, 2020 at 04:14:21PM +0100, Michael Crusoe wrote:
> > Thanks!
> >
> > --
> > Michael R. Crusoe
> >
> > -- Forwarded message -
> > From: Debian FTP Masters 
> > Date: Mon, Feb 3, 2020, 15:42
> > Subject: seqan3_3.0.1+ds-6~bpo10+1_source.changes REJECTED
> > To: Michael R. Crusoe , Debian Med Packaging
> Team
> > 
> >
> >
> >
> >
> > ACL dm: NEW uploads are not allowed
> >
> > binary:libseqan3-dev is NEW.
> > binary:seqan3-doc is NEW.
> > source:seqan3 is NEW.
> >
> > ===
> >
> > Please feel free to respond to this email if you don't understand why
> > your files were rejected, or if you upload new files which address our
> > concerns.
>
> --
> http://fam-tille.de
>


-- 
Michael R. Crusoe


Re: 2020 sprint travel cost reimbursement

2020-02-04 Thread Sascha Steinbiss
Hi Steffen,

> Hi Sascha, please reserve some ... 300? ... Euros for me - Travel plus
> three nights.

Okay, thanks for the information :)
Anyone else? Otherwise I'd ask for approval of 600 EUR in total later today.

Cheers
Sascha

> On 02.02.20 22:35, Sascha Steinbiss wrote:
>> Hi all,
>>
>> This is just another kind reminder. Since the date is rapidly
>> approaching I would like to finalise the pre-approval.
>> So please let me know how much you would like to claim for this sprint
>> in terms of travel expenses (primarily @DDs).
>>
>> Thanks
>> Sascha
>>
>>> On 24. Jan 2020, at 17:49, Sascha Steinbiss 
>>> wrote:
>>>
>>> Hi all,
>>>
>>> coming back to my earlier question about travel costs reimbursements
>>> from Jan 08:
>>>
 If you are coming and looking to be reimbursed for your travels, it
 would be very helpful to get some cost estimates from your side so I
 know what to ask for -- thanks!
>>> Just a reminder that if you want to request reimbursement via Debian for
>>> hotel costs, flights, or similar expenses, please let me know ASAP how
>>> much that will be so I can have the total amount pre-approved by the
>>> DPL. Thanks!
>>>
>>> Olivier, I have already noted your request -- anyone else?
>>>
>>> Thanks!
>>> Sascha
>>>
 On 23.11.19 22:56, Sascha Steinbiss wrote:
> Dear team,
>
> after some quick discussions with Andreas and Michael, I would be
> happy to propose Berlin as the next location for the annual sprint.
> I have checked with my employer [1] and they agreed to let us use
> their space for the weekend. The location would be the same as in
> the 2019 Berlin BSP [2]. It is a modern office building in
> Berlin-Schöneberg, within walking distance to various restaurants
> and pubs. It is also close to two major S-Bahn (city train)
> stations, allowing one to get anywhere in Berlin relatively
> quickly. Hotels and hostels are available a couple of S-Bahn
> stations away, for example near Anhalter Bahnhof or Potsdamer Platz
> [3].
>
> Possible dates I have been discussed with our office management
> team would be in mid-February:
>
>   - 8./9., or
>   - 15./16.
>
> The space will be available from Saturday morning until Sunday
> evening. We will have access to one large (~15 people) and one
> small (~ 5 people) meeting room, so working in separate groups from
> time to time is definitely possible. There will be fast wifi and
> power for laptops, as well as large displays on the walls of each
> room. There is also an open space with a coffee machine.
>
> I have opened a poll to find out which weekend would suit you
> better. If you have other suggestions or preferences, please let me
> know — this was just a first shot and other options can be
> discussed. However, the weekends directly before and after the
> dates above are unlikely to work because on these I will not be
> able to be present for the event, which would be a prerequisite.
>
> Here is the link to the poll:
>
>   https://dudle.inf.tu-dresden.de/debianmed2020/
>
> If we agree to have the sprint in Berlin and also agreed on a date,
> I would be happy to set up a wiki page.
>
> Best regards
> Sascha
>
>
> [1] https://www.dcso.de
> [2] https://wiki.debian.org/BSP/2019/02/de/Berlin
> [3]
> https://www.google.com/maps/search/hotels+near+euref-campus/@52.4884989,13.3415758,14z/data=!3m1!4b1!4m5!2m4!5m3!5m2!4m1!1i2
>
>



Re: 2020 sprint travel cost reimbursement

2020-02-04 Thread Steffen Möller

Hi Sascha, please reserve some ... 300? ... Euros for me - Travel plus
three nights.

Cheers,

Steffen

On 02.02.20 22:35, Sascha Steinbiss wrote:

Hi all,

This is just another kind reminder. Since the date is rapidly approaching I 
would like to finalise the pre-approval.
So please let me know how much you would like to claim for this sprint in terms 
of travel expenses (primarily @DDs).

Thanks
Sascha


On 24. Jan 2020, at 17:49, Sascha Steinbiss  wrote:

Hi all,

coming back to my earlier question about travel costs reimbursements
from Jan 08:


If you are coming and looking to be reimbursed for your travels, it
would be very helpful to get some cost estimates from your side so I
know what to ask for -- thanks!

Just a reminder that if you want to request reimbursement via Debian for
hotel costs, flights, or similar expenses, please let me know ASAP how
much that will be so I can have the total amount pre-approved by the
DPL. Thanks!

Olivier, I have already noted your request -- anyone else?

Thanks!
Sascha


On 23.11.19 22:56, Sascha Steinbiss wrote:

Dear team,

after some quick discussions with Andreas and Michael, I would be happy to 
propose Berlin as the next location for the annual sprint. I have checked with 
my employer [1] and they agreed to let us use their space for the weekend. The 
location would be the same as in the 2019 Berlin BSP [2]. It is a modern office 
building in Berlin-Schöneberg, within walking distance to various restaurants 
and pubs. It is also close to two major S-Bahn (city train) stations, allowing 
one to get anywhere in Berlin relatively quickly. Hotels and hostels are 
available a couple of S-Bahn stations away, for example near Anhalter Bahnhof 
or Potsdamer Platz [3].

Possible dates I have been discussed with our office management team would be 
in mid-February:

  - 8./9., or
  - 15./16.

The space will be available from Saturday morning until Sunday evening. We will 
have access to one large (~15 people) and one small (~ 5 people) meeting room, 
so working in separate groups from time to time is definitely possible. There 
will be fast wifi and power for laptops, as well as large displays on the walls 
of each room. There is also an open space with a coffee machine.

I have opened a poll to find out which weekend would suit you better. If you 
have other suggestions or preferences, please let me know — this was just a 
first shot and other options can be discussed. However, the weekends directly 
before and after the dates above are unlikely to work because on these I will 
not be able to be present for the event, which would be a prerequisite.

Here is the link to the poll:

  https://dudle.inf.tu-dresden.de/debianmed2020/

If we agree to have the sprint in Berlin and also agreed on a date, I would be 
happy to set up a wiki page.

Best regards
Sascha


[1] https://www.dcso.de
[2] https://wiki.debian.org/BSP/2019/02/de/Berlin
[3] 
https://www.google.com/maps/search/hotels+near+euref-campus/@52.4884989,13.3415758,14z/data=!3m1!4b1!4m5!2m4!5m3!5m2!4m1!1i2





Bug#950607: ITP: bwa-mem2 -- the next version of the bwa-mem algorithm in bwa

2020-02-04 Thread Michael R. Crusoe
Package: wnpp
Severity: wishlist

Subject: ITP: bwa-mem2 -- the next version of the bwa-mem algorithm in bwa
Package: wnpp
Owner: Michael R. Crusoe 
Severity: wishlist

* Package name: bwa-mem2
  Version : 2.0~pre2
  Upstream Author : , Vasimuddin Md, Sanchit Misra, Intel Corporation, Heng Li.
* URL : https://github.com/bwa-mem2/bwa-mem2/
* License : MIT
  Programming Lang: C
  Description : the next version of the bwa-mem algorithm in bwa
 It produces alignment identical to bwa and is ~80% faster.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/bwa-mem2