Re: Please have a look at beast2-mcmc in Git
Hi Pierre, Am Mon, Oct 24, 2022 at 10:30:09PM +0200 schrieb Pierre Gruet: > > It seems upstream changed its build process and kind of relies on another > project of theirs, BeastFX. I believe we can make a build without BeastFX, > though, but maybe some of the test failures show one should tweak a bit the > packaging... I will have another look soon. Thanks a lot Andreas. -- http://fam-tille.de
Re: Please have a look at beast2-mcmc in Git
Hi Andreas, Le 24/10/2022 à 09:58, Andreas Tille a écrit : Hi Pierre, I've updated beast2-mcmc in Git but the new upstream version fails to build[1] which has hopefully a simple fix. Thanks for drawing my attention on this issue. I pushed the effort forward, but now half of the tests are failing. It seems upstream changed its build process and kind of relies on another project of theirs, BeastFX. I believe we can make a build without BeastFX, though, but maybe some of the test failures show one should tweak a bit the packaging... I will have another look soon. My changes are pushed to Salsa. Kind regards Andreas. [1] https://salsa.debian.org/med-team/beast2-mcmc/-/jobs/3420119 Cheers, -- Pierre OpenPGP_signature Description: OpenPGP digital signature
Re: BART 0.8.0
On Mon, Oct 24, 2022 at 09:20:21PM +0200, Martin Uecker wrote: > Am Dienstag, den 25.10.2022, 00:41 +0530 schrieb Nilesh Patra: > > Hello, > > > > On Mon, Oct 24, 2022 at 08:39:33PM +0200, Martin Uecker wrote: > > > Hi Andreas and all, > > > > > > I updated the package and turned off some unit tests on > > > i386 for now (and turned on other tests and made some > > > other changes). > > > > > > If you or somebody else could sponser an upload, this > > > would be great! > > > > Sorry for being lazy and not checking this for myself here, but does your > > update also fix the recent release-critical bug against bart-view? > > > > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1022324 > > > > If so, please close this in changelog. > > No, this will additionally also require also > an update of bart-view. By "update" I meant bart-view update there. > > Also, salsa CI is failing the build pipeline, > > > > https://salsa.debian.org/med-team/bart-view/-/jobs/3422195 > > > > this is not expected right? > > I am still working on the update of bart-view. > But bart has to be updated first anyway. I saw your commits and was somehow under the impression that you updated bart-view, -cuda and bart since you usually do this at once :) I have uploaded bart with your changes. Thanks! -- Best, Nilesh signature.asc Description: PGP signature
Re: BART 0.8.0
Am Dienstag, den 25.10.2022, 00:41 +0530 schrieb Nilesh Patra: > Hello, > > On Mon, Oct 24, 2022 at 08:39:33PM +0200, Martin Uecker wrote: > > Hi Andreas and all, > > > > I updated the package and turned off some unit tests on > > i386 for now (and turned on other tests and made some > > other changes). > > > > If you or somebody else could sponser an upload, this > > would be great! > > Sorry for being lazy and not checking this for myself here, but does your > update also fix the recent release-critical bug against bart-view? > > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1022324 > > If so, please close this in changelog. No, this will additionally also require also an update of bart-view. > Also, salsa CI is failing the build pipeline, > > https://salsa.debian.org/med-team/bart-view/-/jobs/3422195 > > this is not expected right? I am still working on the update of bart-view. But bart has to be updated first anyway. > Lastly, please consider to add in your new commit e-mail to your salsa > profile so it > is easy to associate your account w/ your commits. I will update it. Best, Martin
Re: BART 0.8.0
Hello, On Mon, Oct 24, 2022 at 08:39:33PM +0200, Martin Uecker wrote: > > Hi Andreas and all, > > I updated the package and turned off some unit tests on > i386 for now (and turned on other tests and made some > other changes). > > If you or somebody else could sponser an upload, this > would be great! Sorry for being lazy and not checking this for myself here, but does your update also fix the recent release-critical bug against bart-view? https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1022324 If so, please close this in changelog. Also, salsa CI is failing the build pipeline, https://salsa.debian.org/med-team/bart-view/-/jobs/3422195 this is not expected right? Lastly, please consider to add in your new commit e-mail to your salsa profile so it is easy to associate your account w/ your commits. Thank you, -- Best, Nilesh signature.asc Description: PGP signature
Re: BART 0.8.0
Hi Andreas and all, I updated the package and turned off some unit tests on i386 for now (and turned on other tests and made some other changes). If you or somebody else could sponser an upload, this would be great! Then I also need to update bart-view... Martin Am Freitag, den 14.10.2022, 17:39 +0200 schrieb Andreas Tille: > Hi again, > > the build fails on i386[1]. Any idea what might went wrong? > > Please note: I'm not able to sponsor bart in the next week > but I guess someone else will step in. > > Kind regards > > Andreas. > > > [1] > https://buildd.debian.org/status/fetch.php?pkg=bart=i386=0.8.00-2=1665741010=0 > > Am Fri, Oct 14, 2022 at 08:53:00AM +0200 schrieb Andreas Tille: > > Hi Martin, > > > > Am Thu, Oct 13, 2022 at 09:41:19PM +0200 schrieb Martin Uecker: > > > > Yes, the issue is numerical unit tests failing on > > > > some archs. This not entirely surprising as we had this > > > > before, and we added *many* new tests in this version. > > > > > > > > I will see that it get it running on some ARM64 myself > > > > and then push some fixes. > > > > > > Ok, I pushed some changes which should address this. > > > There was some issue affecting 32bit archs > > > and also some other issue we could reproduce > > > on ARM64. This is still under investigation but > > > turning off some optimizations seems to fix it > > > for now. > > > > > > There also is the issue that some autopkgtests > > > were sometimes failing. I tried to address this > > > too. > > > > I've uploaded bart. Thanks a lot for working on this. > > > > > For bart-cuda I also changed the build dependency > > > to g++-11 and maybe this works now with the new > > > nvidia-toolkit > > > > > > So please upload bart and bart-cuda. Thank you! > > > > I've not yet uploaded bart-cuda. I think it makes sense to wait until > > all autobuilders have passed bart. Please ping me in case I might > > forget. > > > > Kind regards > > > > Andreas. > > > > -- > > http://fam-tille.de > > > >
Please have a look at beast2-mcmc in Git
Hi Pierre, I've updated beast2-mcmc in Git but the new upstream version fails to build[1] which has hopefully a simple fix. Kind regards Andreas. [1] https://salsa.debian.org/med-team/beast2-mcmc/-/jobs/3420119 -- http://fam-tille.de
