Re: Bug#1043240: transition: pandas 1.5 -> 2.1
On 11.12.23 08:12, Matthias Klose wrote: On 10.12.23 14:06, Rebecca N. Palmer wrote: Is this an acceptable amount of breakage or should we continue to wait? Bear in mind that if we wait too long, we may be forced into it by some transition further up the stack (e.g. a future Python or numpy) that breaks pandas 1.x. up to the maintainers. But please wait at least until the current pandas and numpy migrated to testing, e.g. that the autopkg tests of pandas and numpy triggered by python3-defaults pass. I just nmued pyrle and sorted-nearest, having dependencies on cython3-legacy, letting the pyranges autopkg tests fail. Once this succeeds, pandas should be able to migrate.
Re: Bug#1043240: transition: pandas 1.5 -> 2.1
On 10.12.23 14:06, Rebecca N. Palmer wrote: I'd like to move forward with the pandas 1.5 -> 2.1 transition reasonably soon. Given that pandas 2.x is *not* required for Python 3.12 (but is required for Cython 3.0), should we wait for the Python 3.12 transition to be done first? These are broken by pandas 2.x and have a possible (but untested) fix in their bug - please test and apply it: dask(?) dials influxdb-python* python-altair python-feather-format python-upsetplot seaborn tqdm* (* = this package is currently also broken for a non-pandas reason, probably Python 3.12, that I don't have a fix for) These are broken by pandas 2.x and have no known-to-me fix: augur cnvkit dyda emperor esda mirtop pymatgen pyranges python-anndata python-biom-format python-cooler python-nanoget python-skbio python-ulmo q2-quality-control q2-demux q2-taxa q2-types q2templates sklearn-pandas Some generic things to try are pandas.util.testing -> pandas.testing, .iteritems() -> .items(), and if one exists, a more recent upstream version. Is this an acceptable amount of breakage or should we continue to wait? Bear in mind that if we wait too long, we may be forced into it by some transition further up the stack (e.g. a future Python or numpy) that breaks pandas 1.x. up to the maintainers. But please wait at least until the current pandas and numpy migrated to testing, e.g. that the autopkg tests of pandas and numpy triggered by python3-defaults pass. Is there a way to see the binNMUs which are still stuck in unstable, and don't migrate? Matthias
Re: dh_python2 extension rename breaking module loading
On 02/11/2015 04:04 PM, Michael Crusoe wrote: Hello, I'm working on the packaging of the khmer project[0] with the debian-med team[1] and we've run into an odd problem: dh_python2 renames the Python extension shared library from `_khmermodule.so` to a version with a mutliarch triplet: `_khmermodule.x86_64-linux-gnu.so`. This breaks module loading: ImportError: No module named _khmer. The interpreter doesn't look up the old module name with the multiarch suffix. Best thing would be to rename it manually (removing the module substring. Of course dh_python2 could do that as well. -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/54dc6a6d.7050...@debian.org
