Re: [Help] One remaining build time error in toil
Am Fri, Jul 14, 2023 at 01:31:00PM +0200 schrieb Michael R. Crusoe: > I thought I patched out all the WDL tests; I suggest adding `WdlToilTest` > to the skip list. Since you've won the race condition to skip the last test why not uploading? ;-) (I'm going offline for a couple of hours now so feel free to finalise this.) BTW, I pushed some preliminary packaging for miniwdl to Salsa[1]. It has quite some test suite failures and for now I gave up on checking whether these are easy to fix or rather a consequence of the missing git submodules. No idea whether it is worth finalising this but at least a start is made. Kind regards Andreas. [1] https://salsa.debian.org/med-team/miniwdl -- http://fam-tille.de
Re: [Help] One remaining build time error in toil
I thought I patched out all the WDL tests; I suggest adding `WdlToilTest` to the skip list. On Thu, Jul 13, 2023 at 9:42 PM Andreas Tille wrote: > Hi folks, > > before I switch of my laptop for today I'd like to hand over some > remaining build time error in toil: > > ___ WdlToilTest.test_empty_file_path > ___ > [gw0] linux -- Python 3.11.4 /usr/bin/python3.11 > Traceback (most recent call last): > File "/usr/lib/python3.11/unittest/case.py", line 57, in testPartExecutor > yield > File "/usr/lib/python3.11/unittest/case.py", line 623, in run > self._callTestMethod(testMethod) > File "/usr/lib/python3.11/unittest/case.py", line 579, in _callTestMethod > if method() is not None: > > File > "/builds/med-team/toil/debian/output/source_dir/src/toil/test/wdl/wdltoil_test.py", > line 54, in test_empty_file_path > assert b'Could not find' in stderr >^^^ > AssertionError > > > see > > https://salsa.debian.org/med-team/toil/-/jobs/4428408 > > > Any help would be welcome to enable me starting with some new tasks > tomorrow, ;-) > > Kind regards > Andreas. > > -- > http://fam-tille.de > >
Re: [Help] One remaining build time error in toil
On Thu, Jul 13, 2023 at 09:42:01PM +0200, Andreas Tille wrote: > Hi folks, > > before I switch of my laptop for today I'd like to hand over some > remaining build time error in toil: On running the command that the test tries to run by hand, I see: | Traceback (most recent call last): | File "", line 198, in _run_module_as_main | File "", line 88, in _run_code | File "/build/toil-INKUvz/toil-5.11.0/.pybuild/cpython3_3.11_toil/build/toil/wdl/wdltoil.py", line 38, in |import WDL | ModuleNotFoundError: No module named 'WDL I think we don't have miniwdl in the archive at this point, so you'd need to package it. Best, Nilesh signature.asc Description: PGP signature
[Help] One remaining build time error in toil
Hi folks, before I switch of my laptop for today I'd like to hand over some remaining build time error in toil: ___ WdlToilTest.test_empty_file_path ___ [gw0] linux -- Python 3.11.4 /usr/bin/python3.11 Traceback (most recent call last): File "/usr/lib/python3.11/unittest/case.py", line 57, in testPartExecutor yield File "/usr/lib/python3.11/unittest/case.py", line 623, in run self._callTestMethod(testMethod) File "/usr/lib/python3.11/unittest/case.py", line 579, in _callTestMethod if method() is not None: File "/builds/med-team/toil/debian/output/source_dir/src/toil/test/wdl/wdltoil_test.py", line 54, in test_empty_file_path assert b'Could not find' in stderr ^^^ AssertionError see https://salsa.debian.org/med-team/toil/-/jobs/4428408 Any help would be welcome to enable me starting with some new tasks tomorrow, ;-) Kind regards Andreas. -- http://fam-tille.de
