From: Andrei Zavada <johnhom...@gmail.com> --- MUMmer3.20/src/tigr/repeat-match.cc | 2 +- mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/MUMmer3.20/src/tigr/repeat-match.cc b/MUMmer3.20/src/tigr/repeat-match.cc index a4bf103..f7aa881 100644 --- a/MUMmer3.20/src/tigr/repeat-match.cc +++ b/MUMmer3.20/src/tigr/repeat-match.cc @@ -847,7 +847,7 @@ void List_Matches { if (Data [i - 1] == Data [j - 1] || Data [i + n] == Data [j + n] - || i > String_Separator && j > String_Separator) + || (i > String_Separator && j > String_Separator)) continue; Reversed = FALSE; if (j > String_Separator) diff --git a/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp b/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp index 177468e..da8f331 100644 --- a/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp +++ b/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp @@ -1187,7 +1187,7 @@ void doReadBlockFile(const std::string & filename, //Check if segment is reported as part of the LCB //The LCB identification step may not report all sequences that are part of the anchor if(sequenceOrientMap.find(sname) != sequenceOrientMap.end()){ - if(!checkbounds || fragmentBegin(g,*vit)>=sequenceCoordsMap[sname].first && fragmentBegin(g,*vit)<=sequenceCoordsMap[sname].second){ + if(!checkbounds || (fragmentBegin(g,*vit)>=sequenceCoordsMap[sname].first && fragmentBegin(g,*vit)<=sequenceCoordsMap[sname].second)){ // -Wuse-spacebar, ffs! vertexOrientMap[*vit] = sequenceOrientMap[sname]; //add node to block currlcb.push_back(*vit); -- 2.3.5 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/1429929049-21676-8-git-send-email-andrei.zavada....@gmail.com