Re: Bug#860746: ITP: easel -- a library of C functions for biological sequence analysis

[Andreas Tille]

Hi Michael,

On Wed, Apr 19, 2017 at 10:44:06PM +0300, Michael Crusoe wrote:
> You are welcome!

:-)
 
> git+ssh://git.debian.org/git/debian-med/easel.git is ready for review

I commited a change which renames easel-dev package to libeasel-dev (not
tested yet).  I also think that the effort of a separate library package
should end up with a dynamic library as well.  When I did so for
biosquid I used the existing configure.ac and created a Makefile.am from
the information in Makefile.in.  This enabled using autoreconf and
creating a dynamic library was easy.

As far as I can see the Makefile.am is only needed in the root dir - all
other Makefile.in might remain.

Kind regards

   Andreas.

-- 
http://fam-tille.de

Re: Bug#860746: ITP: easel -- a library of C functions for biological sequence analysis

[Michael Crusoe]

You are welcome!

git+ssh://git.debian.org/git/debian-med/easel.git is ready for review

2017-04-19 20:11 GMT+03:00 Andreas Tille :

> Very sensible!  Thanks for working on this
> Andreas.
>
> On Wed, Apr 19, 2017 at 10:06:57AM -0700, Michael R. Crusoe wrote:
> > Package: wnpp
> > Severity: wishlist
> > Owner: Debian Med team 
> >
> > * Package name: easel
> >   Version : 0.43
> >   Upstream Author : Sean R. Eddy 
> > * URL : https://github.com/EddyRivasLab/easel
> > * License : BSD-3-clause
> >   Programming Lang: C
> >   Description : a library of C functions for biological sequence
> analysis
> >
> >  Easel is an ANSI C code library for computational analysis of
> >  biological sequences using probabilistic models. Easel is used by
> >  HMMER, the profile hidden Markov model software that underlies the
> >  Pfam protein families database, and by Infernal, the profile
> >  stochastic context-free grammar software that underlies the Rfam RNA
> >  family database. Easel aims to make similar applications more robust
> >  and easier to develop, by providing a set of reusable, documented, and
> >  well-tested functions.
> >
> > Several existing packages contain code copies and it is high time this
> and the example
> > apps were seperately packaged.
> >
> > This will be team maintained by Debian Med
> >
> >
>
> --
> http://fam-tille.de
>



-- 
Michael R. Crusoe
Community Engineer & Co-founder
Common Workflow Language project 
https://impactstory.org/u/-0002-2961-9670
michael.cru...@gmail.com
+1 480 627 9108
+32 2 808 25 58

Bug#860746: ITP: easel -- a library of C functions for biological sequence analysis

[Andreas Tille]

Very sensible!  Thanks for working on this
Andreas.

On Wed, Apr 19, 2017 at 10:06:57AM -0700, Michael R. Crusoe wrote:
> Package: wnpp
> Severity: wishlist
> Owner: Debian Med team 
> 
> * Package name: easel
>   Version : 0.43
>   Upstream Author : Sean R. Eddy 
> * URL : https://github.com/EddyRivasLab/easel
> * License : BSD-3-clause
>   Programming Lang: C
>   Description : a library of C functions for biological sequence analysis
> 
>  Easel is an ANSI C code library for computational analysis of
>  biological sequences using probabilistic models. Easel is used by
>  HMMER, the profile hidden Markov model software that underlies the
>  Pfam protein families database, and by Infernal, the profile
>  stochastic context-free grammar software that underlies the Rfam RNA
>  family database. Easel aims to make similar applications more robust
>  and easier to develop, by providing a set of reusable, documented, and
>  well-tested functions.
> 
> Several existing packages contain code copies and it is high time this and 
> the example
> apps were seperately packaged.
> 
> This will be team maintained by Debian Med
> 
> 

-- 
http://fam-tille.de

Bug#860746: ITP: easel -- a library of C functions for biological sequence analysis

[Michael R. Crusoe]

Package: wnpp
Severity: wishlist
Owner: Debian Med team 

* Package name: easel
  Version : 0.43
  Upstream Author : Sean R. Eddy 
* URL : https://github.com/EddyRivasLab/easel
* License : BSD-3-clause
  Programming Lang: C
  Description : a library of C functions for biological sequence analysis

 Easel is an ANSI C code library for computational analysis of
 biological sequences using probabilistic models. Easel is used by
 HMMER, the profile hidden Markov model software that underlies the
 Pfam protein families database, and by Infernal, the profile
 stochastic context-free grammar software that underlies the Rfam RNA
 family database. Easel aims to make similar applications more robust
 and easier to develop, by providing a set of reusable, documented, and
 well-tested functions.

Several existing packages contain code copies and it is high time this and the 
example
apps were seperately packaged.

This will be team maintained by Debian Med