Re: Bug#946272: ITP: libbio-procedural-perl -- Simple low-dependency procedural interfaces to BioPerl
Uploaded. Thanks for your work on this, Andreas. On Sat, Dec 28, 2019 at 03:17:10AM -0700, Michael Crusoe wrote: > Dear Andreas, > > I've fixed the tests for the libbio-db-embl-per and > libbio-db-ncbihelper-perl packages. > > This also allows libbio-variation-perl to build successfully, in addition > to libbio-procedural-perl. > > Therefore it would be appreciate if you could sponsor all four packages: > libbio-db-embl-perl > libbio-db-ncbihelper-perl > libbio-variation-perl > libbio-procedural-perl > > Many thanks! > > On Fri, Dec 6, 2019 at 11:58 PM Andreas Tille wrote: > > > Hi Michael, > > > > this needs libbio-db-embl-perl (and libbio-db-ncbihelper-perl but this > > was mentioned in my other mail). I cloned libbio-db-embl-perl but this > > ended up in build-time test errors: > > > >dh_auto_test > > make -j4 test TEST_VERBOSE=1 > > make[1]: Entering directory '/build/libbio-db-embl-perl-1.7.4' > > PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" > > "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, > > 'blib/lib', 'blib/arch')" t/*.t > > t/00-compile.t ... > > 1..1 > > ok 1 - Bio/DB/EMBL.pm loaded ok > > ok > > t/author-mojibake.t .. skipped: these tests are for testing by the > > author > > t/author-pod-coverage.t .. skipped: these tests are for testing by the > > author > > t/author-pod-syntax.t skipped: these tests are for testing by the > > author > > # No tests run! > > t/EMBL.t . > > 1..16 > > 1..0 # Skipped: no host: www.google.com > > Dubious, test returned 255 (wstat 65280, 0xff00) > > Failed 16/16 subtests > > > > Test Summary Report > > --- > > t/EMBL.t (Wstat: 65280 Tests: 0 Failed: 0) > > Non-zero exit status: 255 > > Parse errors: More than one plan found in TAP output > > Bad plan. You planned 16 tests but ran 0. > > Files=5, Tests=1, 1 wallclock secs ( 0.04 usr 0.01 sys + 0.29 cusr > > 0.03 csys = 0.37 CPU) > > Result: FAIL > > Failed 1/5 test programs. 0/1 subtests failed. > > make[1]: *** [Makefile:851: test_dynamic] Error 255 > > > > > > I wonder whether all the tests need internet and thus are bound to fail > > and need to be ignored. > > > > Kind regards > > > > Andreas. > > > > On Fri, Dec 06, 2019 at 03:13:20PM +0100, Michael R. Crusoe wrote: > > > Package: wnpp > > > Severity: wishlist > > > > > > Subject: ITP: libbio-procedural-perl -- Simple low-dependency procedural > > interfaces to BioPerl > > > Package: wnpp > > > Owner: Michael R. Crusoe > > > Severity: wishlist > > > > > > * Package name: libbio-procedural-perl > > > Version : 1.7.4 > > > Upstream Author : Copyright: Ewan Birney > > > * URL : https://metacpan.org/release/Bio-Procedural > > > * License : Artistic > > > Programming Lang: Perl > > > Description : Simple low-dependency procedural interfaces to > > BioPerl > > > The code in this distribution focuses on simple low-dependency > > procedural > > > interfaces to BioPerl that don't require knowledge of BioPerl classes > > and > > > methods. > > > > > > Remark: This package is maintained by Debian Med team at > > >https://salsa.debian.org/med-team/libbio-procedural-perl > > > > > > > > > > -- > > http://fam-tille.de > > > > > > -- > Michael R. Crusoe -- http://fam-tille.de
Re: Bug#946272: ITP: libbio-procedural-perl -- Simple low-dependency procedural interfaces to BioPerl
Dear Andreas, I've fixed the tests for the libbio-db-embl-per and libbio-db-ncbihelper-perl packages. This also allows libbio-variation-perl to build successfully, in addition to libbio-procedural-perl. Therefore it would be appreciate if you could sponsor all four packages: libbio-db-embl-perl libbio-db-ncbihelper-perl libbio-variation-perl libbio-procedural-perl Many thanks! On Fri, Dec 6, 2019 at 11:58 PM Andreas Tille wrote: > Hi Michael, > > this needs libbio-db-embl-perl (and libbio-db-ncbihelper-perl but this > was mentioned in my other mail). I cloned libbio-db-embl-perl but this > ended up in build-time test errors: > >dh_auto_test > make -j4 test TEST_VERBOSE=1 > make[1]: Entering directory '/build/libbio-db-embl-perl-1.7.4' > PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" > "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, > 'blib/lib', 'blib/arch')" t/*.t > t/00-compile.t ... > 1..1 > ok 1 - Bio/DB/EMBL.pm loaded ok > ok > t/author-mojibake.t .. skipped: these tests are for testing by the > author > t/author-pod-coverage.t .. skipped: these tests are for testing by the > author > t/author-pod-syntax.t skipped: these tests are for testing by the > author > # No tests run! > t/EMBL.t . > 1..16 > 1..0 # Skipped: no host: www.google.com > Dubious, test returned 255 (wstat 65280, 0xff00) > Failed 16/16 subtests > > Test Summary Report > --- > t/EMBL.t (Wstat: 65280 Tests: 0 Failed: 0) > Non-zero exit status: 255 > Parse errors: More than one plan found in TAP output > Bad plan. You planned 16 tests but ran 0. > Files=5, Tests=1, 1 wallclock secs ( 0.04 usr 0.01 sys + 0.29 cusr > 0.03 csys = 0.37 CPU) > Result: FAIL > Failed 1/5 test programs. 0/1 subtests failed. > make[1]: *** [Makefile:851: test_dynamic] Error 255 > > > I wonder whether all the tests need internet and thus are bound to fail > and need to be ignored. > > Kind regards > > Andreas. > > On Fri, Dec 06, 2019 at 03:13:20PM +0100, Michael R. Crusoe wrote: > > Package: wnpp > > Severity: wishlist > > > > Subject: ITP: libbio-procedural-perl -- Simple low-dependency procedural > interfaces to BioPerl > > Package: wnpp > > Owner: Michael R. Crusoe > > Severity: wishlist > > > > * Package name: libbio-procedural-perl > > Version : 1.7.4 > > Upstream Author : Copyright: Ewan Birney > > * URL : https://metacpan.org/release/Bio-Procedural > > * License : Artistic > > Programming Lang: Perl > > Description : Simple low-dependency procedural interfaces to > BioPerl > > The code in this distribution focuses on simple low-dependency > procedural > > interfaces to BioPerl that don't require knowledge of BioPerl classes > and > > methods. > > > > Remark: This package is maintained by Debian Med team at > >https://salsa.debian.org/med-team/libbio-procedural-perl > > > > > > -- > http://fam-tille.de > > -- Michael R. Crusoe
Re: Bug#946272: ITP: libbio-procedural-perl -- Simple low-dependency procedural interfaces to BioPerl
Hi Michael, this needs libbio-db-embl-perl (and libbio-db-ncbihelper-perl but this was mentioned in my other mail). I cloned libbio-db-embl-perl but this ended up in build-time test errors: dh_auto_test make -j4 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libbio-db-embl-perl-1.7.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ... 1..1 ok 1 - Bio/DB/EMBL.pm loaded ok ok t/author-mojibake.t .. skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t skipped: these tests are for testing by the author # No tests run! t/EMBL.t . 1..16 1..0 # Skipped: no host: www.google.com Dubious, test returned 255 (wstat 65280, 0xff00) Failed 16/16 subtests Test Summary Report --- t/EMBL.t (Wstat: 65280 Tests: 0 Failed: 0) Non-zero exit status: 255 Parse errors: More than one plan found in TAP output Bad plan. You planned 16 tests but ran 0. Files=5, Tests=1, 1 wallclock secs ( 0.04 usr 0.01 sys + 0.29 cusr 0.03 csys = 0.37 CPU) Result: FAIL Failed 1/5 test programs. 0/1 subtests failed. make[1]: *** [Makefile:851: test_dynamic] Error 255 I wonder whether all the tests need internet and thus are bound to fail and need to be ignored. Kind regards Andreas. On Fri, Dec 06, 2019 at 03:13:20PM +0100, Michael R. Crusoe wrote: > Package: wnpp > Severity: wishlist > > Subject: ITP: libbio-procedural-perl -- Simple low-dependency procedural > interfaces to BioPerl > Package: wnpp > Owner: Michael R. Crusoe > Severity: wishlist > > * Package name: libbio-procedural-perl > Version : 1.7.4 > Upstream Author : Copyright: Ewan Birney > * URL : https://metacpan.org/release/Bio-Procedural > * License : Artistic > Programming Lang: Perl > Description : Simple low-dependency procedural interfaces to BioPerl > The code in this distribution focuses on simple low-dependency procedural > interfaces to BioPerl that don't require knowledge of BioPerl classes and > methods. > > Remark: This package is maintained by Debian Med team at >https://salsa.debian.org/med-team/libbio-procedural-perl > > -- http://fam-tille.de
Bug#946272: ITP: libbio-procedural-perl -- Simple low-dependency procedural interfaces to BioPerl
Package: wnpp Severity: wishlist Subject: ITP: libbio-procedural-perl -- Simple low-dependency procedural interfaces to BioPerl Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-procedural-perl Version : 1.7.4 Upstream Author : Copyright: Ewan Birney * URL : https://metacpan.org/release/Bio-Procedural * License : Artistic Programming Lang: Perl Description : Simple low-dependency procedural interfaces to BioPerl The code in this distribution focuses on simple low-dependency procedural interfaces to BioPerl that don't require knowledge of BioPerl classes and methods. Remark: This package is maintained by Debian Med team at https://salsa.debian.org/med-team/libbio-procedural-perl
