Re: Fwd: [Debian-med-packaging] Bug#823673: samtools: FTBFS in testing

[Charles Plessy]

forcemerge 822701 -1
thanks

Le Sat, May 07, 2016 at 08:20:03PM +0200, Olivier Sallou a écrit :
> 
> Has samtools been updated accordingly to match  libhts >= 1.3.1 ? I 
> understand that yes from previous emails, but is described bug linked to the 
> otherbug?

Hi Olivier,

sorry, I have been confused and confusing.  Samtools was not yet uploaded, so I
should have marked bug #822701 only pending and not fixed.  Now I have uploaded
version 1.3.1-2, which solves the problem.

Bon dimanche,

-- 
Charles

Fwd: [Debian-med-packaging] Bug#823673: samtools: FTBFS in testing

[Olivier Sallou]

Hi Charles,
seems that we have cross bugs/mails with samtools.

Has samtools been updated accordingly to match  libhts >= 1.3.1 ? I understand 
that yes from previous emails, but is described bug linked to the otherbug?


Thanks

Olivier

- Mail transféré -
> De: "Santiago Vila" 
> À: "Debian BTS" 
> Envoyé: Samedi 7 Mai 2016 15:03:45
> Objet: [Debian-med-packaging] Bug#823673: samtools: FTBFS in testing
> 
> Package: samtools
> Version: 1.3.1-1
> Severity: serious
> 
> Dear maintainer:
> 
> This package currently fails to build from source in stretch.
> 
> 
> === Testing mpileup.reg regressions ===
> 
> UNEXPECTED FAIL: Output mismatch for $samtools mpileup -x -d 8500 -B -f
> mpileup.ref.fa deep.sam|awk '{print $4}'
> See FAIL-47.out.1 vs expected/47.out
> 
> 
> The full build log is attached.
> 
> I see that this package required a change recently for htslib 1.3.1.
> However, if this only builds now with libhts >= 1.3.1, then the
> Build-Depends field should be updated accordingly.
> 
> Thanks.
> ___
> Debian-med-packaging mailing list
> debian-med-packag...@lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging

samtools_1.3.1-1_amd64-20160507-1455.gz
Description: GNU Zip compressed data