[med-svn] r11350 - trunk/packages/R/r-cran-sparsem/trunk/debian
Author: tille Date: 2012-06-15 09:29:05 + (Fri, 15 Jun 2012) New Revision: 11350 Modified: trunk/packages/R/r-cran-sparsem/trunk/debian/changelog trunk/packages/R/r-cran-sparsem/trunk/debian/rules Log: Fix cut-n-pasto from epitools Modified: trunk/packages/R/r-cran-sparsem/trunk/debian/changelog === --- trunk/packages/R/r-cran-sparsem/trunk/debian/changelog 2012-06-14 22:11:14 UTC (rev 11349) +++ trunk/packages/R/r-cran-sparsem/trunk/debian/changelog 2012-06-15 09:29:05 UTC (rev 11350) @@ -1,4 +1,4 @@ -r-cran-epitools (0.86-1) unstable; urgency=low +r-cran-sparsem (0.96-1) unstable; urgency=low * Initial release. Modified: trunk/packages/R/r-cran-sparsem/trunk/debian/rules === --- trunk/packages/R/r-cran-sparsem/trunk/debian/rules 2012-06-14 22:11:14 UTC (rev 11349) +++ trunk/packages/R/r-cran-sparsem/trunk/debian/rules 2012-06-15 09:29:05 UTC (rev 11350) @@ -1,7 +1,5 @@ #!/usr/bin/make -f # -*- makefile -*- -# debian/rules file for the Debian/GNU Linux r-cran-epitools package -# Copyright 2008 by Andreas Tille ti...@debian.org include /usr/share/R/debian/r-cran.mk ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r11351 - trunk/packages/martj/trunk/debian
Author: tille Date: 2012-06-15 13:23:29 + (Fri, 15 Jun 2012) New Revision: 11351 Modified: trunk/packages/martj/trunk/debian/changelog trunk/packages/martj/trunk/debian/control Log: Update to latest upstream version and take over maintainer address from tasks file Modified: trunk/packages/martj/trunk/debian/changelog === --- trunk/packages/martj/trunk/debian/changelog 2012-06-15 09:29:05 UTC (rev 11350) +++ trunk/packages/martj/trunk/debian/changelog 2012-06-15 13:23:29 UTC (rev 11351) @@ -1,4 +1,4 @@ -martj (0.1-1) UNRELEASED; urgency=low +martj (0.8-1) UNRELEASED; urgency=low [ Steffen Moeller ] * Initial Release. Modified: trunk/packages/martj/trunk/debian/control === --- trunk/packages/martj/trunk/debian/control 2012-06-15 09:29:05 UTC (rev 11350) +++ trunk/packages/martj/trunk/debian/control 2012-06-15 13:23:29 UTC (rev 11351) @@ -1,7 +1,7 @@ Source: martj Section: science Priority: optional -Maintainer: Steffen Moeller moel...@pzr.uni-rostock.de +Maintainer: Steffen Moeller moel...@debian.org Build-Depends: debhelper (= 4.0.0), ant, junit, libreadline-java, jython, libgetopt-java, liblog4j1.2-java, libmysql-java, libant1.6-java, libxalan-java, libjdom-java Standards-Version: 3.6.1.1 Homepage: http://www.biomart.org/ ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r11352 - trunk/packages/martj/trunk/debian
Author: tille Date: 2012-06-15 13:26:24 + (Fri, 15 Jun 2012) New Revision: 11352 Modified: trunk/packages/martj/trunk/debian/copyright Log: DEP5 copyright Modified: trunk/packages/martj/trunk/debian/copyright === --- trunk/packages/martj/trunk/debian/copyright 2012-06-15 13:23:29 UTC (rev 11351) +++ trunk/packages/martj/trunk/debian/copyright 2012-06-15 13:26:24 UTC (rev 11352) @@ -1,28 +1,29 @@ -This package was debianized by Steffen Moeller moel...@pzr.uni-rostock.de on -Fri, 7 Jan 2005 23:58:01 +0100. +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: BioMart +Source: ftp://ftp.ebi.ac.uk/pub/software/biomart/ -It was downloaded from ftp://ftp.ebi.ac.uk/pub/software/biomart/ +Files: * +Copyright: © 2005-2011 Arek Kasprzyk a...@ebi.ac.uk +License: LGPL-2+ -Copyright: +Files: debian/* +Copyright: © 2005 Steffen Moeller moel...@debian.org +License: LGPL-2+ -Upstream Author: Arek Kasprzyk a...@ebi.ac.uk - -License: - +License: LGPL-2+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. - + . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. - + . You should have received a copy of the GNU Lesser General Public License along with this package; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA - -On Debian systems, the complete text of the GNU Lesser General -Public License can be found in `/usr/share/common-licenses/LGPL'. - + . + On Debian systems, the complete text of the GNU Lesser General + Public License can be found in `/usr/share/common-licenses/LGPL'. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r11353 - trunk/packages/martj/trunk/debian
Author: tille
Date: 2012-06-15 13:28:07 + (Fri, 15 Jun 2012)
New Revision: 11353
Modified:
trunk/packages/martj/trunk/debian/control
Log:
Take over parts of the long description from tasks file
Modified: trunk/packages/martj/trunk/debian/control
===
--- trunk/packages/martj/trunk/debian/control 2012-06-15 13:26:24 UTC (rev
11352)
+++ trunk/packages/martj/trunk/debian/control 2012-06-15 13:28:07 UTC (rev
11353)
@@ -9,9 +9,11 @@
Package: martj
Architecture: all
Depends: ${shlibs:Depends}, ${misc:Depends}, libreadline-java, jython,
libgetopt-java, liblog4j1.2-java, libmysql-java, libant1.6-java, libxalan-java,
libjdom-java
-Description: distributed data integration system with powerful query
capabilities
+Description: distributed data integration system for biological data
BioMart is a simple, distributed data integration system with powerful
- query capabilities.
+ query capabilities. The BioMart data model has been applied
+ to the following data sources: UniProt Proteomes, Macromolecular
+ Structure Database (MSD), Ensembl, Vega, and dbSNP.
.
It has been designed to provide researchers with an easy and interactive
access to both the wealth of data available on the Internet and for
___
debian-med-commit mailing list
debian-med-commit@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r11354 - trunk/packages/mauvealign/trunk/debian
Author: tille Date: 2012-06-15 13:32:23 + (Fri, 15 Jun 2012) New Revision: 11354 Modified: trunk/packages/mauvealign/trunk/debian/copyright Log: DEP5 copyright Modified: trunk/packages/mauvealign/trunk/debian/copyright === --- trunk/packages/mauvealign/trunk/debian/copyright2012-06-15 13:28:07 UTC (rev 11353) +++ trunk/packages/mauvealign/trunk/debian/copyright2012-06-15 13:32:23 UTC (rev 11354) @@ -1,24 +1,19 @@ -X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat -X-Debianized-By: Andreas Tille ti...@debian.org -X-Debinized-Date: Thu, 13 Mar 2008 15:16:59 +0100 -X-Source-Downloaded-From: http://gel.ahabs.wisc.edu/mauve/source/mauve_2.1.1/ -X-Upstream-Author: © 2003, 2004, 2005, 2006, 2007, Aaron Darling -- darl...@cs.wisc.edu +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Source: http://gel.ahabs.wisc.edu/mauve/source/mauve_2.1.1/ Files: debian/* Copyright: © 2008, Andreas Tille ti...@debian.org License: GPL-2+ - This package is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. Files: * -Copyright: © 2003, 2004, 2005, 2006, 2007, Aaron Darling -- darl...@cs.wisc.edu +Copyright: © 2003-2007 Aaron Darling darl...@cs.wisc.edu +License: GPL-2+ -License: GPL-2 +License: GPL-2+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation version 2 of the License. + . + On Debian systems, the complete text of the licenses can be found in: + GPL-2 - `/usr/share/common-licenses/GPL-2' -On Debian systems, the complete text of the licenses can be found in: -GPL-2 - `/usr/share/common-licenses/GPL-2' ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r11355 - trunk/packages/libbio-das-perl/trunk/debian
Author: tille
Date: 2012-06-15 13:44:41 + (Fri, 15 Jun 2012)
New Revision: 11355
Modified:
trunk/packages/libbio-das-perl/trunk/debian/control
trunk/packages/libbio-das-perl/trunk/debian/copyright
Log:
DEP5 copyright
Modified: trunk/packages/libbio-das-perl/trunk/debian/control
===
--- trunk/packages/libbio-das-perl/trunk/debian/control 2012-06-15 13:32:23 UTC
(rev 11354)
+++ trunk/packages/libbio-das-perl/trunk/debian/control 2012-06-15 13:44:41 UTC
(rev 11355)
@@ -3,7 +3,7 @@
Priority: optional
Build-Depends: debhelper (= 4.0.2)
Build-Depends-Indep: perl (= 5.8.0-7)
-Maintainer: Steffen Moeller moel...@pzr.uni-rostock.de
+Maintainer: Steffen Moeller moel...@debian.org
Standards-Version: 3.6.1
Homepage: http://www.biodas.org/
@@ -11,7 +11,7 @@
Architecture: all
Depends: ${perl:Depends}, ${misc:Depends},
Suggests: dazzle
-Description: [Biology] interface to Distributed Annotation System (DAS)
+Description: interface to Distributed Annotation System (DAS)
Bio::Das provides access to genome sequencing and annotation databases
that export their data in Distributed Annotation System (DAS) format
version 1.5. Both unencrypted (http:) and SSL-encrypted (https:)
Modified: trunk/packages/libbio-das-perl/trunk/debian/copyright
===
--- trunk/packages/libbio-das-perl/trunk/debian/copyright 2012-06-15
13:32:23 UTC (rev 11354)
+++ trunk/packages/libbio-das-perl/trunk/debian/copyright 2012-06-15
13:44:41 UTC (rev 11355)
@@ -1,35 +1,35 @@
-This is the debian package for the Bio-Das module.
-It was created by Steffen Moeller moel...@pzr.uni-rostock.de using
dh-make-perl.
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Lincoln Stein lst...@cshl.org
+Upstream-Name: BioDAS
+Source: path_to_download
-The upstream author is:
+Files: *
+Copyright: © 2001-2011 Cold Spring Harbor Laboratory
+License: Artistic
+Disclaimer: In addition, the following disclaimers apply:
+ CSHL makes no representations whatsoever as to the SOFTWARE contained
+ herein. It is experimental in nature and is provided WITHOUT WARRANTY
+ OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER
+ WARRANTY, EXPRESS OR IMPLIED. CSHL MAKES NO REPRESENTATION OR
+ WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
+ OTHER PROPRIETARY RIGHT.
+ .
+ By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
+ against any loss, claim, damage or liability, of whatsoever kind or
+ nature, which may arise from your Institution's respective use,
+ handling or storage of the SOFTWARE.
+ .
+ If publications result from research using this SOFTWARE, we ask that
+ CSHL be acknowledged and/or credit be given to CSHL scientists, as
+ scientifically appropriate.
-Lincoln Stein lst...@cshl.org.
+Files: debian/*
+Copyright: © 2005 Steffen Moeller moel...@debian.org
+License: Artistic
-Copyright (c) 2001 Cold Spring Harbor Laboratory
-
-The Bio::Das package and all associated files are Copyright (c)
-2001-2004 Cold Spring Harbor Laboratory.
-
-This library is free software; you can redistribute it and/or modify
-it under the same terms as Perl itself. See the Artistic License file
-in the main Perl distribution for specific terms and conditions of
-use. For Debian systems this file is usually installed at
-/usr/share/common-licenses/Artistic.
-
-In addition, the following disclaimers apply:
-
-CSHL makes no representations whatsoever as to the SOFTWARE contained
-herein. It is experimental in nature and is provided WITHOUT WARRANTY
-OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER
-WARRANTY, EXPRESS OR IMPLIED. CSHL MAKES NO REPRESENTATION OR
-WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
-OTHER PROPRIETARY RIGHT.
-
-By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
-against any loss, claim, damage or liability, of whatsoever kind or
-nature, which may arise from your Institution's respective use,
-handling or storage of the SOFTWARE.
-
-If publications result from research using this SOFTWARE, we ask that
-CSHL be acknowledged and/or credit be given to CSHL scientists, as
-scientifically appropriate.
+License: Artistic
+ This library is free software; you can redistribute it and/or modify
+ it under the same terms as Perl itself. See the Artistic License file
+ in the main Perl distribution for specific terms and conditions of
+ use. For Debian systems this file is usually installed at
+ /usr/share/common-licenses/Artistic.
___
debian-med-commit mailing list
debian-med-commit@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r11356 - in trunk/packages/gnumed-client/trunk/debian: . conf
Author: shilbert-guest Date: 2012-06-15 14:31:56 + (Fri, 15 Jun 2012) New Revision: 11356 Modified: trunk/packages/gnumed-client/trunk/debian/changelog trunk/packages/gnumed-client/trunk/debian/conf/gnumed-client.conf Log: New upstream version Modified: trunk/packages/gnumed-client/trunk/debian/changelog === --- trunk/packages/gnumed-client/trunk/debian/changelog 2012-06-15 13:44:41 UTC (rev 11355) +++ trunk/packages/gnumed-client/trunk/debian/changelog 2012-06-15 14:31:56 UTC (rev 11356) @@ -1,4 +1,4 @@ -gnumed-client (1.1.16-1) unstable; urgency=low +gnumed-client (1.2.0-1) experimental; urgency=low * New upstream Modified: trunk/packages/gnumed-client/trunk/debian/conf/gnumed-client.conf === --- trunk/packages/gnumed-client/trunk/debian/conf/gnumed-client.conf 2012-06-15 13:44:41 UTC (rev 11355) +++ trunk/packages/gnumed-client/trunk/debian/conf/gnumed-client.conf 2012-06-15 14:31:56 UTC (rev 11356) @@ -20,7 +20,7 @@ # - [preferences] -profile = GNUmed database at publicdb.gnumed.de (PUBLIC) (gnumed_...@publicdb.gnumed.de) +profile = GNUmed database at publicdb.gnumed.de (PUBLIC) (gnumed_...@publicdb.gnumed.de) login = any-doc @@ -67,7 +67,7 @@ host = port = 5432 -database = gnumed_v16 +database = gnumed_v17 public/open access = 0 help desk = Your own IT support needs configuration @@ -84,7 +84,7 @@ # on a database server port = 5432 -database = gnumed_v16 +database = gnumed_v17 # public/open access controls exception message and log handling # 0 -- message by default goes to public list if no receiver given ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r11357 - in trunk/packages/fasttree/trunk/debian: . patches
Author: alteholz Date: 2012-06-15 18:05:04 + (Fri, 15 Jun 2012) New Revision: 11357 Added: trunk/packages/fasttree/trunk/debian/fasttree.1 trunk/packages/fasttree/trunk/debian/fasttree.upstream-metadata.yaml trunk/packages/fasttree/trunk/debian/fasttreeMP.1 trunk/packages/fasttree/trunk/debian/get-orig-source trunk/packages/fasttree/trunk/debian/manpages trunk/packages/fasttree/trunk/debian/watch Removed: trunk/packages/fasttree/trunk/debian/README.Debian Modified: trunk/packages/fasttree/trunk/debian/changelog trunk/packages/fasttree/trunk/debian/compat trunk/packages/fasttree/trunk/debian/control trunk/packages/fasttree/trunk/debian/copyright trunk/packages/fasttree/trunk/debian/fasttree.install trunk/packages/fasttree/trunk/debian/patches/Makefile.patch trunk/packages/fasttree/trunk/debian/rules Log: fasttree finalized Deleted: trunk/packages/fasttree/trunk/debian/README.Debian === --- trunk/packages/fasttree/trunk/debian/README.Debian 2012-06-15 14:31:56 UTC (rev 11356) +++ trunk/packages/fasttree/trunk/debian/README.Debian 2012-06-15 18:05:04 UTC (rev 11357) @@ -1,9 +0,0 @@ -fasttree for Debian - -Please help with - - * man pages - * get-orig-source - upstream is only a file - - -- Steffen Moeller moel...@debian.org Wed, 02 Mar 2011 18:52:56 +0100 Modified: trunk/packages/fasttree/trunk/debian/changelog === --- trunk/packages/fasttree/trunk/debian/changelog 2012-06-15 14:31:56 UTC (rev 11356) +++ trunk/packages/fasttree/trunk/debian/changelog 2012-06-15 18:05:04 UTC (rev 11357) @@ -1,5 +1,5 @@ -fasttree (2.1.0.c-1) UNRELEASED; urgency=low +fasttree (2.1.4-1) unstable; urgency=low - * Initial release (Closes: #) is the bug number of your ITP + * Initial release (Closes: #677648) - -- Steffen Moeller moel...@debian.org Wed, 02 Mar 2011 18:52:56 +0100 + -- Thorsten Alteholz deb...@alteholz.de Fri, 15 Jun 2012 19:52:56 +0200 Modified: trunk/packages/fasttree/trunk/debian/compat === --- trunk/packages/fasttree/trunk/debian/compat 2012-06-15 14:31:56 UTC (rev 11356) +++ trunk/packages/fasttree/trunk/debian/compat 2012-06-15 18:05:04 UTC (rev 11357) @@ -1 +1 @@ -7 +9 Modified: trunk/packages/fasttree/trunk/debian/control === --- trunk/packages/fasttree/trunk/debian/control2012-06-15 14:31:56 UTC (rev 11356) +++ trunk/packages/fasttree/trunk/debian/control2012-06-15 18:05:04 UTC (rev 11357) @@ -3,9 +3,10 @@ Priority: extra Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org DM-Upload-Allowed: yes -Uploaders: Steffen Moeller moel...@debian.org -Build-Depends: debhelper (= 7.0.50~) -Standards-Version: 3.9.1 +Uploaders: Steffen Moeller moel...@debian.org, + Thorsten Alteholz deb...@alteholz.de +Build-Depends: debhelper (= 9) +Standards-Version: 3.9.3 Homepage: http://www.microbesonline.org/fasttree/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/fasttree/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/fasttree/trunk/ @@ -28,5 +29,8 @@ for the varying rates of evolution across sites, FastTree uses a single rate for each site (the CAT approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support - values with the Shimodaira-Hasegawa test (these are the same as PhyML - 3's SH-like local supports). + values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's + SH-like local supports). + . + This package contains a single threaded version (fasttree) and a + parallel version which uses OpenMP (fasttreMP). Modified: trunk/packages/fasttree/trunk/debian/copyright === --- trunk/packages/fasttree/trunk/debian/copyright 2012-06-15 14:31:56 UTC (rev 11356) +++ trunk/packages/fasttree/trunk/debian/copyright 2012-06-15 18:05:04 UTC (rev 11357) @@ -8,6 +8,7 @@ Files: debian/* Copyright: 2011 Steffen Moeller moel...@debian.org + 2012 Thorsten Alteholz deb...@alteholz.de License: GPL-2.0+ License: GPL-2.0+ Added: trunk/packages/fasttree/trunk/debian/fasttree.1 === --- trunk/packages/fasttree/trunk/debian/fasttree.1 (rev 0) +++ trunk/packages/fasttree/trunk/debian/fasttree.1 2012-06-15 18:05:04 UTC (rev 11357) @@ -0,0 +1,339 @@ +.TH fasttree 1 June 2012 Lawrence Berkeley National Lab User Commands +.SH NAME +fasttree \- create phylogenetic trees from alignments of nucleotide or protein sequences +.SH DESCRIPTION +fasttree infers approximately-maximum-likelihood phylogenetic trees from +alignments of nucleotide or protein
[med-svn] r11358 - in trunk/packages/fis-gtm/fis-gtm/trunk/debian: . patches
Author: luisibanez-guest
Date: 2012-06-15 19:52:27 + (Fri, 15 Jun 2012)
New Revision: 11358
Removed:
trunk/packages/fis-gtm/fis-gtm/trunk/debian/patches/01-comlist.patch
Modified:
trunk/packages/fis-gtm/fis-gtm/trunk/debian/changelog
trunk/packages/fis-gtm/fis-gtm/trunk/debian/compat
trunk/packages/fis-gtm/fis-gtm/trunk/debian/control
trunk/packages/fis-gtm/fis-gtm/trunk/debian/copyright
trunk/packages/fis-gtm/fis-gtm/trunk/debian/patches/series
trunk/packages/fis-gtm/fis-gtm/trunk/debian/rules
Log:
ENH: June 13 hackathon changes by Yaroslav Halchenko.
Modified: trunk/packages/fis-gtm/fis-gtm/trunk/debian/changelog
===
--- trunk/packages/fis-gtm/fis-gtm/trunk/debian/changelog 2012-06-15
18:05:04 UTC (rev 11357)
+++ trunk/packages/fis-gtm/fis-gtm/trunk/debian/changelog 2012-06-15
19:52:27 UTC (rev 11358)
@@ -1,7 +1,7 @@
-fis-gtm (5.5-000) UNRELEASED; urgency=low
+fis-gtm (5.5-000-1) UNRELEASED; urgency=low
[ Luis Ibanez ]
- * Initial release, helps to close #541239
+ * Initial release (Closes: #541239)
* New upstream version 5.5
* Adding cmake configuration to facilitate builds in multiple platforms.
* debian/rules:
@@ -11,8 +11,25 @@
* debian/control:
Added cmake as a build dependency.
- -- Luis Ibanez luis.iba...@kitware.com Sat, 24 Mar 2012 18:34:02 -0500
+ [ Yaroslav Halchenko ]
+ * debian/control:
+- boosted policy and added few -dev packages we know to be needed
+- removed unused ATM adduser, ucf, debconf from *Depends
+- provide both meta and versioned fis-gtm packages
+- boosted policy to 3.9.3
+- boosted dh compat 9 to get hardening flags automagically
+ * debian/copyright:
+- adjusted for DEP5
+ * debian/rules:
+- disable call to gtminstall at package build time:
+ upstream relies on the installdir path internally so $test command
+ used in various tools would not work rendering system broken according
+ to upstream
+- generate lintian-overrides for shlib-with-executable-stack
+- provide dumped from web changelog for the most recent release
+ -- Yaroslav Halchenko deb...@onerussian.com Wed, 13 Jun 2012 19:27:19 -0400
+
fis-gtm (5.4-002B-1) UNRELEASED; urgency=low
[ Luis Ibanez ]
@@ -70,6 +87,6 @@
fis-gtm (5.4-002A-1) UNRELEASED; urgency=low
- * Initial release (Closes: #541239)
+ * Initial attempt to package
-- Thorsten Alteholz deb...@alteholz.de Mon, 13 Jun 2011 19:34:17 +0200
Modified: trunk/packages/fis-gtm/fis-gtm/trunk/debian/compat
===
--- trunk/packages/fis-gtm/fis-gtm/trunk/debian/compat 2012-06-15 18:05:04 UTC
(rev 11357)
+++ trunk/packages/fis-gtm/fis-gtm/trunk/debian/compat 2012-06-15 19:52:27 UTC
(rev 11358)
@@ -1 +1 @@
-8
+9
Modified: trunk/packages/fis-gtm/fis-gtm/trunk/debian/control
===
--- trunk/packages/fis-gtm/fis-gtm/trunk/debian/control 2012-06-15 18:05:04 UTC
(rev 11357)
+++ trunk/packages/fis-gtm/fis-gtm/trunk/debian/control 2012-06-15 19:52:27 UTC
(rev 11358)
@@ -1,22 +1,53 @@
Source: fis-gtm
-Section: science
+Section: database
Priority: extra
-Build-Depends: debhelper (= 8), adduser, ucf, po-debconf,
+Build-Depends: debhelper (= 9),
libicu-dev, tcsh, gnupg, zlib1g-dev, libncurses-dev, libgcrypt11-dev,
libgpgme11-dev,
- linux-libc-dev, gcc-multilib, cmake
-Standards-Version: 3.9.2
+ linux-libc-dev, gcc-multilib, cmake, libelf-dev
+Standards-Version: 3.9.3
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
DM-Upload-Allowed: yes
Uploaders: Andreas Tille ti...@debian.org,
- Thorsten Alteholz deb...@alteholz.de,
- Luis Ibanez luis.iba...@kitware.com
+ Thorsten Alteholz deb...@alteholz.de,
+ Luis Ibanez luis.iba...@kitware.com
Homepage: http://sourceforge.net/projects/fis-gtm
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/fis-gtm/fis-gtm/trunk
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/fis-gtm/fis-gtm/trunk
Package: fis-gtm
+Architecture: all
+Depends: ${misc:Depends}, fis-gtm-5.5.000
+Description: metapackage for the latest version of FIS-GT.M database
+ GT.M is a database engine with scalability proven in large real-time
+ transaction processing systems that have thousands of concurrent
+ users, individual database file sizes to the Terabyte range (with
+ virtually unlimited aggregate database sizes). Yet the light
+ footprint of GT.M allows it to also scale down for use in small
+ applications and software appliances (virtual machines).
+ .
+ The GT.M data model is hierarchical associative memory (i.e.,
+ multi-dimensional array) that imposes no restrictions on the data
+ types of the indexes or content - the application logic can impose
+ any schema, dictionary or data organization suited to its problem
+ domain.
[med-svn] r11359 - trunk/packages/fis-gtm/fis-gtm/trunk/debian
Author: luisibanez-guest Date: 2012-06-15 20:03:19 + (Fri, 15 Jun 2012) New Revision: 11359 Modified: trunk/packages/fis-gtm/fis-gtm/trunk/debian/rules Log: ENH: Bootstraping no longer needs extra files. Modified: trunk/packages/fis-gtm/fis-gtm/trunk/debian/rules === --- trunk/packages/fis-gtm/fis-gtm/trunk/debian/rules 2012-06-15 19:52:27 UTC (rev 11358) +++ trunk/packages/fis-gtm/fis-gtm/trunk/debian/rules 2012-06-15 20:03:19 UTC (rev 11359) @@ -17,9 +17,7 @@ dh $@ override_dh_auto_configure: - @echo I: copyring pre-generated bootstrap files to build GT.M - cp -a ./$(SRC_EXTRAS_DIR)/* . - dh_auto_configure -- -DCMAKE_INSTALL_PREFIX:PATH=/usr/lib/fis-gtm/$(UVERDIR) + dh_auto_configure -- -DCMAKE_INSTALL_PREFIX:PATH=/usr -DGTM_INSTALL_DIR=lib/fis-gtm/$(UVERDIR) # At some point in the future, GT.M developers will support DESTDIR # and then it will look like: ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r11360 - trunk/packages/fis-gtm/fis-gtm/trunk/debian
Author: luisibanez-guest Date: 2012-06-15 20:17:06 + (Fri, 15 Jun 2012) New Revision: 11360 Modified: trunk/packages/fis-gtm/fis-gtm/trunk/debian/compat Log: ENH: Reverting to version 8 to match VM. Modified: trunk/packages/fis-gtm/fis-gtm/trunk/debian/compat === --- trunk/packages/fis-gtm/fis-gtm/trunk/debian/compat 2012-06-15 20:03:19 UTC (rev 11359) +++ trunk/packages/fis-gtm/fis-gtm/trunk/debian/compat 2012-06-15 20:17:06 UTC (rev 11360) @@ -1 +1 @@ -9 +8 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] cufflinks branch, pristine-tar, updated. 075d4c1ec181531185c969b5938c921257e77192
The following commit has been merged in the pristine-tar branch: commit 075d4c1ec181531185c969b5938c921257e77192 Author: Carlos Borroto carlos.borr...@gmail.com Date: Fri Jun 15 16:06:07 2012 -0400 pristine-tar data for cufflinks_2.0.1.orig.tar.gz diff --git a/cufflinks_2.0.1.orig.tar.gz.delta b/cufflinks_2.0.1.orig.tar.gz.delta new file mode 100644 index 000..7ab417b Binary files /dev/null and b/cufflinks_2.0.1.orig.tar.gz.delta differ diff --git a/cufflinks_2.0.1.orig.tar.gz.id b/cufflinks_2.0.1.orig.tar.gz.id new file mode 100644 index 000..4ca67b8 --- /dev/null +++ b/cufflinks_2.0.1.orig.tar.gz.id @@ -0,0 +1 @@ +ac0e50db862a851ef6fe82b7a5ddc0d2e0e3c1e1 -- Transcript assembly, differential expression, and differential regulation for RNA-Seq. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
