[med-svn] r12491 - trunk/packages/freemedforms-project/trunk/debian
Author: ericmaeker-guest Date: 2012-11-02 18:19:27 + (Fri, 02 Nov 2012) New Revision: 12491 Modified: trunk/packages/freemedforms-project/trunk/debian/changelog trunk/packages/freemedforms-project/trunk/debian/rules Log: freemedforms: correcting the auto_configure step Modified: trunk/packages/freemedforms-project/trunk/debian/changelog === --- trunk/packages/freemedforms-project/trunk/debian/changelog 2012-11-01 16:47:57 UTC (rev 12490) +++ trunk/packages/freemedforms-project/trunk/debian/changelog 2012-11-02 18:19:27 UTC (rev 12491) @@ -10,6 +10,7 @@ * debian/rules: * adding extra-plugins for the FreeMedForms EMR * removing unused params for the qmake +* reformatting dh_auto_configure step -- Andreas Tille ti...@debian.org Tue, 01 Nov 2012 18:00:00 +0200 Modified: trunk/packages/freemedforms-project/trunk/debian/rules === --- trunk/packages/freemedforms-project/trunk/debian/rules 2012-11-01 16:47:57 UTC (rev 12490) +++ trunk/packages/freemedforms-project/trunk/debian/rules 2012-11-02 18:19:27 UTC (rev 12491) @@ -1,11 +1,11 @@ #!/usr/bin/make -f -# (c) 2012, Eric Maeker, MD (fr), The FreeMedForms project, BSD revised license +# (c) 2012, Eric Maeker, MD (fr), The FreeMedForms project, BSD 3 clause license # The @ in front of a command prevents make from displaying # vars -FREEMEDFORMS_EMR := freemedforms -FREEDIAMS := freediams -FREEACCOUNT := freeaccount +FREEMEDFORMS_EMR:=freemedforms +FREEDIAMS:=freediams +FREEACCOUNT:=freeaccount QMAKE_CONFIG := CONFIG+=LINUX_INTEGRATED -r QMAKE_FREEMEDFORMS_CONFIG := CONFIG+=with-alerts CONFIG+=with-webcam @@ -13,17 +13,17 @@ QMAKE_IPATH := INSTALL_ROOT_PATH=/usr/ # func -AUTOCONF_MAIN = -D$(1) -- $(QMAKE_CONFIG) $(QMAKE_IPATH) $(QMAKE_FREEMEDFORMS_CONFIG) $(1).pro -AUTOCONF_SUB = -D$(1) -- $(QMAKE_CONFIG) $(QMAKE_IPATH) $(QMAKE_SUBPROJECT_CONFIG) $(1).pro +AUTOCONF_MAIN = $(QMAKE_CONFIG) $(QMAKE_IPATH) $(QMAKE_FREEMEDFORMS_CONFIG) $(1).pro +AUTOCONF_SUB = $(QMAKE_CONFIG) $(QMAKE_IPATH) $(QMAKE_SUBPROJECT_CONFIG) $(1).pro %: dh $@ --parallel --buildsystem=qmake_qt4 # --dbg-package=freemedforms-project-dbg override_dh_auto_configure: lrelease global_resources/translations/*.ts - dh_auto_configure $(call AUTOCONF_MAIN, $(FREEMEDFORMS_EMR)) $(extra_configure_opts) - dh_auto_configure $(call AUTOCONF_SUB, $(FREEDIAMS)) $(extra_configure_opts) - dh_auto_configure $(call AUTOCONF_SUB, $(FREEACCOUNT)) $(extra_configure_opts) + dh_auto_configure -D$(FREEMEDFORMS_EMR) -- $(call AUTOCONF_MAIN, $(FREEMEDFORMS_EMR)) $(extra_configure_opts) + dh_auto_configure -D$(FREEDIAMS) -- $(call AUTOCONF_SUB, $(FREEDIAMS)) $(extra_configure_opts) + dh_auto_configure -D$(FREEACCOUNT) -- $(call AUTOCONF_SUB, $(FREEACCOUNT)) $(extra_configure_opts) override_dh_auto_clean: rm -Rf bin ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12492 - trunk/packages/fasttree/trunk/debian
Author: alteholz Date: 2012-11-02 18:42:52 + (Fri, 02 Nov 2012) New Revision: 12492 Modified: trunk/packages/fasttree/trunk/debian/changelog Log: new upstream version Modified: trunk/packages/fasttree/trunk/debian/changelog === --- trunk/packages/fasttree/trunk/debian/changelog 2012-11-02 18:19:27 UTC (rev 12491) +++ trunk/packages/fasttree/trunk/debian/changelog 2012-11-02 18:42:52 UTC (rev 12492) @@ -1,3 +1,9 @@ +fasttree (2.1.5-1) unstable; urgency=low + + * New upstream version + + -- Thorsten Alteholz deb...@alteholz.de Fri, 02 Nov 2012 18:00:00 +0100 + fasttree (2.1.4-2) UNRELEASED; urgency=low * Fix name of upstream file and add eprint ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] ray branch, master, created. d3de038e997999b7975b2077b712607bb842c5fa
The branch, master has been created at d3de038e997999b7975b2077b712607bb842c5fa (commit) - Shortlog commit d3de038e997999b7975b2077b712607bb842c5fa Author: Sébastien Boisvert sebastien.boisver...@ulaval.ca Date: Fri Nov 2 15:22:04 2012 -0400 This the package 2.1.0-3 Signed-off-by: Sébastien Boisvert sebastien.boisver...@ulaval.ca commit ed16aad30ef1ff1d5eb3afc3b4ebe5f4d793262b Author: Sébastien Boisvert sebastien.boisver...@ulaval.ca Date: Fri Nov 2 15:07:01 2012 -0400 Now packaging 3 packages: ray, ray-extra, ray-doc Signed-off-by: Sébastien Boisvert sebastien.boisver...@ulaval.ca commit 97382b09aa9649b86e324a17d006bfc61e1c24c8 Author: Sébastien Boisvert sebastien.boisver...@ulaval.ca Date: Fri Nov 2 14:50:18 2012 -0400 Updated uploaders and maintainers Signed-off-by: Sébastien Boisvert sebastien.boisver...@ulaval.ca commit 490aca81b3883b86785dd6285c582cdb0183441c Author: Sébastien Boisvert sebastien.boisver...@ulaval.ca Date: Fri Nov 2 14:46:46 2012 -0400 Adding the debian directory. The first release will be 2.1.0-3 Signed-off-by: Sébastien Boisvert sebastien.boisver...@ulaval.ca commit 3ac6248820f5c9a5e522f65536c4da13f7e2a54c Author: Sébastien Boisvert sebastien.boisver...@ulaval.ca Date: Fri Nov 2 13:56:54 2012 -0400 This is upstream version of Ray 2.1.0 Signed-off-by: Sébastien Boisvert sebastien.boisver...@ulaval.ca --- -- Packaging of Ray in Debian ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] ray annotated tag, upstream/2.1.0, created. upstream/2.1.0
The annotated tag, upstream/2.1.0 has been created at d1dcab6c6493b7a0dc783a92c0d8ffe8f1156b3d (tag) tagging 3ac6248820f5c9a5e522f65536c4da13f7e2a54c (commit) tagged by Sébastien Boisvert on Fri Nov 2 13:57:15 2012 -0400 - Shortlog upstream/2.1.0 Sébastien Boisvert (1): This is upstream version of Ray 2.1.0 --- -- Packaging of Ray in Debian ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] ray annotated tag, debian/2.1.0-3, created. debian/2.1.0-3
The annotated tag, debian/2.1.0-3 has been created at 677e06a965f0aaaec771e6cd4d2e81d8c61048fc (tag) tagging d3de038e997999b7975b2077b712607bb842c5fa (commit) replaces upstream/2.1.0 tagged by Sébastien Boisvert on Fri Nov 2 15:22:47 2012 -0400 - Shortlog 2.1.0-3 Sébastien Boisvert (4): Adding the debian directory. The first release will be 2.1.0-3 Updated uploaders and maintainers Now packaging 3 packages: ray, ray-extra, ray-doc This the package 2.1.0-3 --- -- Packaging of Ray in Debian ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] ray branch, master, updated. debian/2.1.0-3-3-g02d233b
The following commit has been merged in the master branch: commit 9e28978b5b282b4ceb6a4bd63a46404f3d8d1e18 Author: Sébastien Boisvert sebastien.boisver...@ulaval.ca Date: Fri Nov 2 16:41:34 2012 -0400 Fixed the NAME section in the man page Signed-off-by: Sébastien Boisvert sebastien.boisver...@ulaval.ca diff --git a/debian/Ray.1 b/debian/Ray.1 index a01b59e..ece095b 100644 --- a/debian/Ray.1 +++ b/debian/Ray.1 @@ -1,7 +1,7 @@ .\ DO NOT MODIFY THIS FILE! It was generated by help2man 1.38.2. .TH RAY 1 November 2012 Ray version 2.1.0 User Commands .SH NAME -Ray \- =Ray - assemble genomes in parallel using the message-passing interface +Ray \- assemble genomes in parallel using the message-passing interface .SH DESCRIPTION NAME .IP -- Packaging of Ray in Debian ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] ray branch, master, updated. debian/2.1.0-3-3-g02d233b
The following commit has been merged in the master branch: commit 02d233bcfc248cf6aafea50c4d07b2b3bd07f884 Author: Sébastien Boisvert sebastien.boisver...@ulaval.ca Date: Fri Nov 2 16:49:46 2012 -0400 Updated git repository in the control file Signed-off-by: Sébastien Boisvert sebastien.boisver...@ulaval.ca diff --git a/debian/control b/debian/control index 1c65a05..c58e07a 100644 --- a/debian/control +++ b/debian/control @@ -10,8 +10,8 @@ Build-Depends: debhelper (= 7.0.50~), mpi-default-dev Standards-Version: 3.9.1 Homepage: http://denovoassembler.sourceforge.net/ -Vcs-Git: git://github.com/sebhtml/ray.git -Vcs-Browser: https://github.com/sebhtml/ray +Vcs-Git: git+ssh://git.debian.org/git/debian-med/abyss.git +Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/ray.git Package: ray Section: science -- Packaging of Ray in Debian ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] ray branch, master, updated. debian/2.1.0-3-3-g02d233b
The following commit has been merged in the master branch:
commit e9a49bccc88a4be584e5b7829482d8f17a54ba33
Author: Sébastien Boisvert sebastien.boisver...@ulaval.ca
Date: Fri Nov 2 16:25:43 2012 -0400
Fixed all but the lintian unusual-interpreter lines
These lines are related to /usr/bin/Rscript.
Signed-off-by: Sébastien Boisvert sebastien.boisver...@ulaval.ca
diff --git a/debian/ray.1 b/debian/Ray.1
similarity index 99%
rename from debian/ray.1
rename to debian/Ray.1
index e9245f1..a01b59e 100644
--- a/debian/ray.1
+++ b/debian/Ray.1
@@ -1,7 +1,7 @@
.\ DO NOT MODIFY THIS FILE! It was generated by help2man 1.38.2.
.TH RAY 1 November 2012 Ray version 2.1.0 User Commands
.SH NAME
-Ray \- manual page for Ray version 2.1.0
+Ray \- =Ray - assemble genomes in parallel using the message-passing interface
.SH DESCRIPTION
NAME
.IP
diff --git a/debian/changelog b/debian/changelog
index 2ba8655..f9789b7 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,14 @@
+ray (2.1.0-4) stable; urgency=low
+
+ * Fixed the target distribution for debian
+ * Fixed E: ray-doc: extended-description-is-empty
+ * Fixed E: ray-extra: extended-description-is-empty
+ * Fixed W: ray: binary-without-manpage usr/bin/Ray
+ * Fixed W: ray source: newer-standards-version 3.9.3 (current is 3.9.1)
+ * Fixed W: ray: manpage-has-useless-whatis-entry usr/share/man/man1/Ray.1.gz
+
+ -- Sébastien Boisvert sebastien.boisver...@ulaval.ca Fri, 02 Nov 2012
19:39:00 +
+
ray (2.1.0-3) precise; urgency=low
* Added a man page
diff --git a/debian/control b/debian/control
index 529d653..1c65a05 100644
--- a/debian/control
+++ b/debian/control
@@ -8,12 +8,13 @@ Build-Depends: debhelper (= 7.0.50~),
zlib1g-dev,
libbz2-dev,
mpi-default-dev
-Standards-Version: 3.9.3
+Standards-Version: 3.9.1
Homepage: http://denovoassembler.sourceforge.net/
Vcs-Git: git://github.com/sebhtml/ray.git
Vcs-Browser: https://github.com/sebhtml/ray
Package: ray
+Section: science
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends},
mpi-default-bin
@@ -29,12 +30,23 @@ Description: parallel genome assemblies for parallel DNA
sequencing
- Ray Ontologies gene ontology profiling
Package: ray-doc
+Section: doc
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: Documentation files
+ Ray is a parallel software that computes de novo genome assemblies with
+ next-generation sequencing data.
+ Ray is written in C++ and can run in parallel on numerous interconnected
+ computers using the message-passing interface (MPI) standard.
Package: ray-extra
+Section: science
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends},
-Recommends: ${python:Depends}, r-base-core
+ ${python:Depends}, r-base-core
Description: Scripts and XSL sheets for post-processing
+ Ray is a parallel software that computes de novo genome assemblies with
+ next-generation sequencing data.
+ Ray is written in C++ and can run in parallel on numerous interconnected
+ computers using the message-passing interface (MPI) standard.
+
--
Packaging of Ray in Debian
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[med-svn] [SCM] ray annotated tag, debian/2.1.0-4, created. debian/2.1.0-4
The annotated tag, debian/2.1.0-4 has been created at 41f9baff58bb227e2b8b4112b423638c9de265a3 (tag) tagging 02d233bcfc248cf6aafea50c4d07b2b3bd07f884 (commit) replaces debian/2.1.0-3 tagged by Sébastien Boisvert on Fri Nov 2 16:50:17 2012 -0400 - Shortlog debian/2.1.0-4 Sébastien Boisvert (3): Fixed all but the lintian unusual-interpreter lines Fixed the NAME section in the man page Updated git repository in the control file --- -- Packaging of Ray in Debian ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] tophat branch, master, updated. debian/1.4.1-1-37-g028c603
The following commit has been merged in the master branch: commit 768d0f1e25eca52064f9b633ee2721f99ae227dc Merge: 5eb742a17999da9ff81ff31464d78d8531510e0a 5b81b024e78cf31f3d801123d9cb961c335fb8e6 Author: Carlos Borroto carlos.borr...@gmail.com Date: Fri Nov 2 22:18:23 2012 -0400 Merge tag 'upstream/2.0.6' Upstream version 2.0.6 -- A spliced read mapper for RNA-Seq ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] tophat branch, pristine-tar, updated. 2e7c0e8ceadee28c54b3c7cc2caad914bd5e3687
The following commit has been merged in the pristine-tar branch: commit 2e7c0e8ceadee28c54b3c7cc2caad914bd5e3687 Author: Carlos Borroto carlos.borr...@gmail.com Date: Fri Nov 2 22:18:23 2012 -0400 pristine-tar data for tophat_2.0.6.orig.tar.gz diff --git a/tophat_2.0.6.orig.tar.gz.delta b/tophat_2.0.6.orig.tar.gz.delta new file mode 100644 index 000..0e374ef Binary files /dev/null and b/tophat_2.0.6.orig.tar.gz.delta differ diff --git a/tophat_2.0.6.orig.tar.gz.id b/tophat_2.0.6.orig.tar.gz.id new file mode 100644 index 000..0bba9d3 --- /dev/null +++ b/tophat_2.0.6.orig.tar.gz.id @@ -0,0 +1 @@ +29297146a8484f954c9789eeacedd4bf7552b5f5 -- A spliced read mapper for RNA-Seq ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] tophat branch, master, updated. debian/1.4.1-1-37-g028c603
The following commit has been merged in the master branch: commit 028c6036b3393bbcd504be21dfafc8be78cf3b92 Author: Carlos Borroto carlos.borr...@gmail.com Date: Fri Nov 2 22:19:01 2012 -0400 updated changelog to 2.0.6 diff --git a/debian/changelog b/debian/changelog index fecd934..906710f 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +tophat (2.0.6-1) UNRELEASED; urgency=low + + [ Carlos Borroto ] + * Imported Upstream version 2.0.6 + + -- Carlos Borroto carlos.borr...@gmail.com Fri, 02 Nov 2012 21:57:06 -0400 + tophat (2.0.5-1) unstable; urgency=low [ Alexandre Mestiashvili ] @@ -5,14 +12,6 @@ tophat (2.0.5-1) unstable; urgency=low -- Alexandre Mestiashvili a...@biotec.tu-dresden.de Fri, 05 Oct 2012 10:56:26 +0200 -tophat (2.0.4-1) UNRELEASED; urgency=low - - [ Carlos Borroto ] - * Imported Upstream version 2.0.4 - - - -- Carlos Borroto carlos.borr...@gmail.com Thu, 21 Jun 2012 14:30:19 -0400 - tophat (2.0.3-1) unstable; urgency=low * Imported Upstream version 2.0.3 -- A spliced read mapper for RNA-Seq ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] tophat annotated tag, upstream/2.0.6, created. upstream/2.0.6
The annotated tag, upstream/2.0.6 has been created at 291dd3f5d389f6ac702a03212e94514f8533bacd (tag) tagging 5b81b024e78cf31f3d801123d9cb961c335fb8e6 (commit) replaces upstream/2.0.5 tagged by Carlos Borroto on Fri Nov 2 22:18:23 2012 -0400 - Shortlog Upstream version 2.0.6 Carlos Borroto (1): Imported Upstream version 2.0.6 --- -- A spliced read mapper for RNA-Seq ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.0-beta7-38-gc1ba6b6
The following commit has been merged in the master branch:
commit 9fff03564930ae56e5f10af0fea37da4425eb4cb
Author: Carlos Borroto carlos.borr...@gmail.com
Date: Fri Nov 2 23:07:02 2012 -0400
dropped beta for source files handling in get-orig-source and watch files
diff --git a/debian/get-orig-source b/debian/get-orig-source
index 95bfe88..489e95b 100755
--- a/debian/get-orig-source
+++ b/debian/get-orig-source
@@ -6,4 +6,4 @@ PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
VERSION=`uscan --verbose --force-download --repack --destdir ../tarballs| \
grep Newest version on remote site is .* local version is .* | \
head -n 1 | \
-sed s/Newest version on remote site is
\([0-9\.]\+-beta[0-9]\+\)-source,.*/\1/`
+sed s/Newest version on remote site is \([0-9\.]\+\)-source,.*/\1/`
diff --git a/debian/watch b/debian/watch
index d2c6f8a..73379ec 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,4 +1,4 @@
version=3
opts=filenamemangle=s/(.*)(-source)(\..*$)/$1$3/\
- http://sf.net/bowtie-bio/bowtie2-([\d\.]+\-beta\d)\-source\.zip
+ http://sf.net/bowtie-bio/bowtie2-([\d\.]+)\-source\.zip
--
ultrafast memory-efficient short read aligner
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[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.0-beta7-38-gc1ba6b6
The following commit has been merged in the master branch: commit b4d4b3dcd68198cb373e2b7ca79a74b8b6069138 Author: Carlos Borroto carlos.borr...@gmail.com Date: Fri Nov 2 23:13:22 2012 -0400 removed patch bowtie2_gcc4.7, fixed in upstream diff --git a/debian/patches/bowtie2_gcc4.7.patch b/debian/patches/bowtie2_gcc4.7.patch deleted file mode 100644 index 8ed75d8..000 --- a/debian/patches/bowtie2_gcc4.7.patch +++ /dev/null @@ -1,14 +0,0 @@ -Description: porting to gcc4.7 added include unistd.h -Author: Alexandre Mestiashvili a...@biotec.tu-dresden.de -Last-Update: 2012-05-09 - bowtie2.orig/word_io.h -+++ bowtie2/word_io.h -@@ -20,6 +20,7 @@ - #ifndef WORD_IO_H_ - #define WORD_IO_H_ - -+#include unistd.h - #include stdint.h - #include iostream - #include fstream diff --git a/debian/patches/series b/debian/patches/series index 121e6fa..8e9ce04 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,3 +1,2 @@ hardening.patch -bowtie2_gcc4.7.patch fix_makefile_machine_detection.patch -- ultrafast memory-efficient short read aligner ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.0-beta7-38-gc1ba6b6
The following commit has been merged in the master branch: commit c1ba6b64379ca8d55db8852e825904f7cf194110 Author: Carlos Borroto carlos.borr...@gmail.com Date: Fri Nov 2 23:15:47 2012 -0400 updated changelog to 2.0.2 diff --git a/debian/changelog b/debian/changelog index 5a9e5e3..726ca0c 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,5 +1,6 @@ -bowtie2 (2.0.0-beta7-1) UNRELEASED; urgency=low +bowtie2 (2.0.2-1) UNRELEASED; urgency=low + [ Alexandre Mestiashvili ] * debian/control force architcures to i386/amd64 kfreebsd-i386/amd64 and hurd-i386 SSE is not availbale on others. Closes: #668123 * debhelper version 9 @@ -9,7 +10,11 @@ bowtie2 (2.0.0-beta7-1) UNRELEASED; urgency=low * debian/bowtie2.lintian-overrides to avoid lintian's waring to be fixed by using epochs and tilda in upstream version - -- Alexandre Mestiashvili a...@biotec.tu-dresden.de Mon, 30 Jul 2012 13:51:31 +0200 + [ Carlos Borroto ] + * Imported Upstream version 2.0.2 + * bowtie2_gcc4.7.patch no longer needed + + -- Carlos Borroto carlos.borr...@gmail.com Fri, 02 Nov 2012 23:13:30 -0400 bowtie2 (2.0.0-beta6-3) unstable; urgency=low -- ultrafast memory-efficient short read aligner ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] bowtie2 branch, pristine-tar, updated. ea932e39e06a523d05121ca100d344ff66f04484
The following commit has been merged in the pristine-tar branch: commit ea932e39e06a523d05121ca100d344ff66f04484 Author: Carlos Borroto carlos.borr...@gmail.com Date: Fri Nov 2 23:07:21 2012 -0400 pristine-tar data for bowtie2_2.0.2.orig.tar.gz diff --git a/bowtie2_2.0.2.orig.tar.gz.delta b/bowtie2_2.0.2.orig.tar.gz.delta new file mode 100644 index 000..d8e3d65 Binary files /dev/null and b/bowtie2_2.0.2.orig.tar.gz.delta differ diff --git a/bowtie2_2.0.2.orig.tar.gz.id b/bowtie2_2.0.2.orig.tar.gz.id new file mode 100644 index 000..7e39839 --- /dev/null +++ b/bowtie2_2.0.2.orig.tar.gz.id @@ -0,0 +1 @@ +a40cb92c13c719048c24d60159a66f9effe587c0 -- ultrafast memory-efficient short read aligner ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] bowtie2 annotated tag, upstream/2.0.2, created. upstream/2.0.2
The annotated tag, upstream/2.0.2 has been created at ad01d1a0aceb3e75794f56790ce8c7b8103ae4ef (tag) tagging 3e6cacd61401250970fe3359438fa79b98141fc8 (commit) replaces upstream/2.0.0-beta7 tagged by Carlos Borroto on Fri Nov 2 23:07:21 2012 -0400 - Shortlog Upstream version 2.0.2 Carlos Borroto (1): Imported Upstream version 2.0.2 --- -- ultrafast memory-efficient short read aligner ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.2-38-geebacd8
The following commit has been merged in the master branch: commit eebacd8d8258d5c2f1faab48891257a09751ffc5 Author: Carlos Borroto carlos.borr...@gmail.com Date: Fri Nov 2 23:22:30 2012 -0400 added myself to uploaders diff --git a/debian/control b/debian/control index d6cad68..a8d9d52 100644 --- a/debian/control +++ b/debian/control @@ -4,7 +4,8 @@ Priority: extra Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org DM-Upload-Allowed: yes Uploaders: Alexandre Mestiashvili a...@biotec.tu-dresden.de, - Andreas Tille ti...@debian.org + Andreas Tille ti...@debian.org, + Carlos Borroto carlos.borr...@gmail.com Build-Depends: debhelper (= 9.0), help2man Standards-Version: 3.9.3 Homepage: http://bowtie-bio.sourceforge.net/bowtie2 -- ultrafast memory-efficient short read aligner ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
