[med-svn] r13272 - trunk/packages/uc-echo/trunk/debian

2013-04-08 Thread Andreas Tille
Author: tille
Date: 2013-04-09 06:12:35 + (Tue, 09 Apr 2013)
New Revision: 13272

Modified:
   trunk/packages/uc-echo/trunk/debian/upstream
Log:
PMC and PubMed are different - injecting the right PubMed ID to enable correct 
linking


Modified: trunk/packages/uc-echo/trunk/debian/upstream
===
--- trunk/packages/uc-echo/trunk/debian/upstream2013-04-08 17:40:13 UTC 
(rev 13271)
+++ trunk/packages/uc-echo/trunk/debian/upstream2013-04-09 06:12:35 UTC 
(rev 13272)
@@ -6,4 +6,4 @@
   Volume: 21
   Pages: 1181--1192
   DOI: 10.1101/gr.111351.110
-  PMID: PMC3129260
+  PMID: 21482625


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[med-svn] r13271 - trunk/packages/uc-echo/trunk/debian

2013-04-08 Thread Thorsten Alteholz
Author: alteholz
Date: 2013-04-08 17:40:13 + (Mon, 08 Apr 2013)
New Revision: 13271

Added:
   trunk/packages/uc-echo/trunk/debian/upstream
Log:
add some reference information

Added: trunk/packages/uc-echo/trunk/debian/upstream
===
--- trunk/packages/uc-echo/trunk/debian/upstream
(rev 0)
+++ trunk/packages/uc-echo/trunk/debian/upstream2013-04-08 17:40:13 UTC 
(rev 13271)
@@ -0,0 +1,9 @@
+Reference:
+  Author: W.-C. Kao and A.H. Chan and Y.S. Song
+  Title: ECHO: A reference-free short-read error correction algorithm
+  Journal: Genome Research
+  Year: 2011
+  Volume: 21
+  Pages: 1181--1192
+  DOI: 10.1101/gr.111351.110
+  PMID: PMC3129260


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[med-svn] r13270 - in trunk/packages: . python-clips python-clips/trunk python-clips/trunk/debian python-clips/trunk/debian/source

2013-04-08 Thread Thorsten Alteholz
Author: alteholz
Date: 2013-04-08 17:20:56 + (Mon, 08 Apr 2013)
New Revision: 13270

Added:
   trunk/packages/python-clips/
   trunk/packages/python-clips/trunk/
   trunk/packages/python-clips/trunk/debian/
   trunk/packages/python-clips/trunk/debian/changelog
   trunk/packages/python-clips/trunk/debian/compat
   trunk/packages/python-clips/trunk/debian/control
   trunk/packages/python-clips/trunk/debian/copyright
   trunk/packages/python-clips/trunk/debian/get-orig-source
   trunk/packages/python-clips/trunk/debian/rules
   trunk/packages/python-clips/trunk/debian/source/
   trunk/packages/python-clips/trunk/debian/source/format
   trunk/packages/python-clips/trunk/debian/watch
Log:
initial version of python-clips


Property changes on: trunk/packages/python-clips/trunk/debian
___
Added: mergeWithUpstream
   + 1

Added: trunk/packages/python-clips/trunk/debian/changelog
===
--- trunk/packages/python-clips/trunk/debian/changelog  
(rev 0)
+++ trunk/packages/python-clips/trunk/debian/changelog  2013-04-08 17:20:56 UTC 
(rev 13270)
@@ -0,0 +1,6 @@
+python-clips (1.0.7.348+clips-1) unstable; urgency=low
+
+  * initial version (Closes: #577406)
+
+ -- Thorsten Alteholz   Mon, 08 Apr 2013 18:00:07 +0100
+

Added: trunk/packages/python-clips/trunk/debian/compat
===
--- trunk/packages/python-clips/trunk/debian/compat 
(rev 0)
+++ trunk/packages/python-clips/trunk/debian/compat 2013-04-08 17:20:56 UTC 
(rev 13270)
@@ -0,0 +1 @@
+9

Added: trunk/packages/python-clips/trunk/debian/control
===
--- trunk/packages/python-clips/trunk/debian/control
(rev 0)
+++ trunk/packages/python-clips/trunk/debian/control2013-04-08 17:20:56 UTC 
(rev 13270)
@@ -0,0 +1,21 @@
+Source: python-clips
+Section: python
+Priority: optional
+Maintainer: Debian Med Packaging Team 

+Uploaders: Thorsten Alteholz 
+Build-Depends: debhelper (>= 9),
+ python-all-dev
+Standards-Version: 3.9.4
+Homepage: http://sourceforge.net/projects/pyclips/
+Vcs-Browser: 
http://svn.debian.org/wsvn/debian-med/trunk/packages/python-clips/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-clips/trunk/
+
+Package: python-clips
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
+Provides: ${python:Provides}
+Description: Python module to interface the CLIPS expert system shell library
+ CLIPS is an expert system shell / inference engine written by NASA 
+ (see Debian package clips).
+ .
+ pyclips are the Python bindings to that engine.

Added: trunk/packages/python-clips/trunk/debian/copyright
===
--- trunk/packages/python-clips/trunk/debian/copyright  
(rev 0)
+++ trunk/packages/python-clips/trunk/debian/copyright  2013-04-08 17:20:56 UTC 
(rev 13270)
@@ -0,0 +1,64 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: pyclips
+Source:  http://sourceforge.net/projects/pyclips/
+
+Files: *
+Copyright: 2002-2008 Francesco Garosi/JKS
+License: LGPL-2
+
+Files: CLIPSSrc.zip
+Copyright: 2006 Barry Cameron, Bebe Ly, Brian L. Donnell, 
+Chris Culbert, Gary D. Riley
+License: CLIPS
+
+Files: debian/*
+Copyright: 2013 Thorsten Alteholz 
+License: GPL-2.0+
+
+License: GPL-2.0+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see 
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
+License: LGPL-2
+ On Debian systems, the complete text of the GNU Lesser General
+ Public License version 2.1 can be found in 
"/usr/share/common-licenses/LGPL-2".
+
+License: CLIPS
+ CLIPS License Information
+ .
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the "Software"),
+ to deal in the Software without restriction, including without limitation
+ the rights to use, copy, modify, merge, publish, distribute, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so.
+