[med-svn] r13323 - trunk/packages

2013-04-16 Thread Laszlo Kajan 
Author: lkajan-guest
Date: 2013-04-16 11:26:18 + (Tue, 16 Apr 2013)
New Revision: 13323

Added:
   trunk/packages/metastudent/
Log:
new repository for MetaStudent project - a GO term predictor, ITP 705537


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[med-svn] r13324 - in trunk/packages: . visionegg visionegg/trunk visionegg/trunk/debian visionegg/trunk/debian/source

2013-04-16 Thread Thorsten Alteholz 
Author: alteholz
Date: 2013-04-16 17:24:17 + (Tue, 16 Apr 2013)
New Revision: 13324

Added:
   trunk/packages/visionegg/
   trunk/packages/visionegg/trunk/
   trunk/packages/visionegg/trunk/debian/
   trunk/packages/visionegg/trunk/debian/changelog
   trunk/packages/visionegg/trunk/debian/compat
   trunk/packages/visionegg/trunk/debian/control
   trunk/packages/visionegg/trunk/debian/copyright
   trunk/packages/visionegg/trunk/debian/python-visionegg.install
   trunk/packages/visionegg/trunk/debian/rules
   trunk/packages/visionegg/trunk/debian/source/
   trunk/packages/visionegg/trunk/debian/source/format
   trunk/packages/visionegg/trunk/debian/watch
Log:
initial version of visionegg


Property changes on: trunk/packages/visionegg/trunk/debian
___
Added: mergeWithUpstream
   + 1

Added: trunk/packages/visionegg/trunk/debian/changelog
===
--- trunk/packages/visionegg/trunk/debian/changelog 
(rev 0)
+++ trunk/packages/visionegg/trunk/debian/changelog 2013-04-16 17:24:17 UTC 
(rev 13324)
@@ -0,0 +1,6 @@
+visionegg (1.2.1-1) unstable; urgency=low
+
+  * initial version (Closes: #365856)
+
+ -- Thorsten Alteholz deb...@alteholz.de  Tue, 16 Apr 2013 18:00:07 +0200
+

Added: trunk/packages/visionegg/trunk/debian/compat
===
--- trunk/packages/visionegg/trunk/debian/compat
(rev 0)
+++ trunk/packages/visionegg/trunk/debian/compat2013-04-16 17:24:17 UTC 
(rev 13324)
@@ -0,0 +1 @@
+9

Added: trunk/packages/visionegg/trunk/debian/control
===
--- trunk/packages/visionegg/trunk/debian/control   
(rev 0)
+++ trunk/packages/visionegg/trunk/debian/control   2013-04-16 17:24:17 UTC 
(rev 13324)
@@ -0,0 +1,26 @@
+Source: visionegg
+Section: python
+Priority: optional
+Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
+Uploaders: Thorsten Alteholz deb...@alteholz.de
+Build-Depends: debhelper (= 9),
+ python-all-dev (=2.6),
+ python-setuptools,
+ python-numpy,
+ python-imaging,
+ python-opengl,
+ python-pygame,
+ mesa-common-dev,
+ libgl1-mesa-dev
+Standards-Version: 3.9.4
+Homepage: http://www.visionegg.org
+Vcs-Browser: 
http://svn.debian.org/wsvn/debian-med/trunk/packages/visionegg/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/visionegg/trunk/
+
+Package: python-visionegg
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, libgl1-mesa-glx
+Description: Python library for 2D/3D visual stimulus generation
+ The Vision Egg is a programming library that uses standard, inexpensive 
+ computer graphics cards to produce visual stimuli for vision research 
+ experiments.

Added: trunk/packages/visionegg/trunk/debian/copyright
===
--- trunk/packages/visionegg/trunk/debian/copyright 
(rev 0)
+++ trunk/packages/visionegg/trunk/debian/copyright 2013-04-16 17:24:17 UTC 
(rev 13324)
@@ -0,0 +1,85 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: visionegg
+Source: http://www.visionegg.org
+
+Files: *
+Copyright: 2001-2003 Andrew Straw
+   2004-2008 California Institute of Technology
+License: LGPL 2.1
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.
+ .
+ On Debian systems, the complete text of the GNU Lesser General
+ Public License version 2.1 can be found in 
/usr/share/common-licenses/LGPL-2.
+
+Files: VisionEgg/DaqKeyboard.py
+   VisionEgg/ResponseControl.py
+   demo/demo_fixationpoint.py
+   demo/demo_keyboardresponse.py 
+   demo/demo_keyboardtrigger.py 
+Copyright: 2005 Hubertus Becker, Hertie Institute for Clinical Brain Research,
+   Department of Cognitive Neurology, University of Tuebingen
+License: LGPL 2.1
+ see above
+
+Files: VisoinEgg/MoreStimuli.py
+Copyright: 2001-2003 Andrew Straw.
+   2005 by Hertie Institute for Clinical Brain Research,
+Department of Cognitive Neurology, University of Tuebingen
+

[med-svn] [SCM] r-cran-stringr branch, master, updated. upstream/0.6.0-11-gea8fdd9

2013-04-16 Thread Dirk Eddelbuettel 
The following commit has been merged in the master branch:
commit ea8fdd9a9f7dacccb6e475a49b9ee3fc90d3f315
Author: Dirk Eddelbuettel e...@debian.org
Date:   Tue Apr 16 20:44:31 2013 -0500

r-cran-string 0.6.2-1 with updated upstream source

diff --git a/DESCRIPTION b/DESCRIPTION
index b0d7adf..65535bd 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,24 +1,23 @@
 Package: stringr
-Imports: plyr
 Maintainer: Hadley Wickham h.wick...@gmail.com
 License: GPL-2
 Title: Make it easier to work with strings.
 Type: Package
 Author: Hadley Wickham h.wick...@gmail.com
-Description: stringr is a set of simple wrappers that make
-R's string functions more consistent, simpler and
-easier to use.  It does this by ensuring that: function
-and argument names (and positions) are consistent, all
-functions deal with NA's and zero length character
-appropriately, and the output data structures from each
-function matches the input data structures of other
-functions.
-Version: 0.6
+Description: stringr is a set of simple wrappers that make R's string
+functions more consistent, simpler and easier to use.  It does
+this by ensuring that: function and argument names (and
+positions) are consistent, all functions deal with NA's and
+zero length character appropriately, and the output data
+structures from each function matches the input data structures
+of other functions.
+Version: 0.6.2
 Depends: R (= 2.14)
 Suggests: testthat (= 0.3)
 Collate: 'c.r' 'checks.r' 'count.r' 'detect.r' 'dup.r' 'extract.r'
 'length.r' 'locate.r' 'match.r' 'modifiers.r' 'pad-trim.r'
 'replace.r' 'split.r' 'sub.r' 'vectorise.r' 'word.r' 'wrap.r'
-Packaged: 2011-12-07 18:00:28 UTC; hadley
+'utils.r'
+Packaged: 2012-12-05 21:47:03 UTC; hadley
 Repository: CRAN
-Date/Publication: 2011-12-08 19:01:59
+Date/Publication: 2012-12-06 08:39:59
diff --git a/MD5 b/MD5
index 33788a8..13cb908 100644
--- a/MD5
+++ b/MD5
@@ -1,37 +1,38 @@
-78377b278a2ab7dc4ec2e72389f1d3a4 *DESCRIPTION
-1cd28bab77fc770f65e3776ac9722c9e *NAMESPACE
-cf6b0eecdb356e9175ddd3373bf5c1aa *NEWS
-509e04a6851160587abee049e2c9993c *R/c.r
-1cacfadf8d0c8cbece564e6a23cb3855 *R/checks.r
-877d928271666e5f628e20261797834d *R/count.r
-ba2cf7a3444a095f797641df88faeaa0 *R/detect.r
-6626b13c99a62a3503dc89dae575adfe *R/dup.r
-a513b0c93966e488d2e0967b030e4473 *R/extract.r
-c0c4ed8abea5cf08679ce22590f25997 *R/length.r
-0063a7d283b850dfaa26d7c596613b89 *R/locate.r
-269d1bd08a3f3316dff679681310f496 *R/match.r
-833fd0322d094eb43186c034eb5f3aa6 *R/modifiers.r
-33688a2a4447daff4d64557142cb1b02 *R/pad-trim.r
-a9078c4b6433e412682448d84962448f *R/replace.r
-91a99c4df185d918458123ebb120e4ad *R/split.r
-e47df99eebd4a9a4f9f22414d259a032 *R/sub.r
-dd94bd05deb361ffc12912d74c0c35b0 *R/vectorise.r
-be21e230447f5b43910ca16de510f2ff *R/word.r
-4a967d7113a6179410f234b21c8a3589 *R/wrap.r
+c14761e3000b5eaae6ff0aa5262a6630 *DESCRIPTION
+0cca89f86586b39903872782ad0c2d92 *NAMESPACE
+84346581b10f2d04598438e428488268 *NEWS
+3d81c2717c2e42df6b55d2b264502c0f *R/c.r
+1711405698cf3015be163e208f1eff40 *R/checks.r
+e55ebb86acca2cb4ee3026c7f2694457 *R/count.r
+729c91c257c5b4642c03a4db03f5f96a *R/detect.r
+93397237016f3ceaedbe6d2a4b1548b4 *R/dup.r
+2293db9f73f80f83f15286b5531c9766 *R/extract.r
+2b8caff655dbdccedc752c496c1f1041 *R/length.r
+95d57be6ed4e6e8786d39a0797098d72 *R/locate.r
+37072fa39b5a3a41f0cf0b54b6341a2e *R/match.r
+b650885277dba55b82664f2edf42aeec *R/modifiers.r
+27735fdcdf9c7bb201bf148cef58e7a5 *R/pad-trim.r
+44165abbb4926ee6bee46f3b94f425ef *R/replace.r
+f84ed242cc4fbc0b817e6fb9178388dd *R/split.r
+6f82f94cbc0d13367b53828923db57a2 *R/sub.r
+524e1f157dac5ce09334df6c6ae0c774 *R/utils.r
+b5557d805bac52a3e4c8ce27e5a02c35 *R/vectorise.r
+59b72fb1d808b48dc72ee1d22bb07f03 *R/word.r
+83d187f96099d2fb3e0e74fde6c5f180 *R/wrap.r
 1234794765eabc33a0e77211b8681688 *README.md
-e5b5c991143791d8ab3cecf4f29e89a4 *inst/tests/test-check.r
-a09a24b88d53949c1a97c863fb70c6e6 *inst/tests/test-count.r
-03792fd14d0f3cada31487c74e8db2e7 *inst/tests/test-detect.r
-683b95acc25312948c662d97b9e2662b *inst/tests/test-dup.r
-3513d286f5d678a33006e0c84a197383 *inst/tests/test-extract.r
-ef3b86f7f42bf4ebca8f557a656c34bb *inst/tests/test-join.r
+f24da3c0d81e9d8fb6dc9eab10f303dd *inst/tests/test-check.r
+61f9d77768cf9ff813d382f9337178fb *inst/tests/test-count.r
+d2a6a58e44de1968cf46bd3e8c2d0e26 *inst/tests/test-detect.r
+065f752787f210c753d5bb5feea7f7a5 *inst/tests/test-dup.r
+bcdf3dd9ddd2d00d189d43eac13347a8 *inst/tests/test-extract.r
+8f03149944d3937c9b5a30d686c6e492 *inst/tests/test-join.r
 922366c3451f88871b9ce063529edb7a *inst/tests/test-length.r
-82d1861371945335cbb617ed859b9b68 *inst/tests/test-locate.r
-dfba8e6d40dbb7f594a7bfaf2e68b20a *inst/tests/test-match.r
-d556cb694be5dc4a7ad422c193f7926f *inst/tests/test-pad.r
-e41a8f4bf9a13f15a67f2e622f22cc1a *inst/tests/test-split.r
-2e85f99483960116e82b23546f6b827f *inst/tests/test-sub.r