[med-svn] r13771 - trunk/packages/libzeep/trunk/debian
Author: alteholz Date: 2013-05-30 17:46:54 + (Thu, 30 May 2013) New Revision: 13771 Modified: trunk/packages/libzeep/trunk/debian/ trunk/packages/libzeep/trunk/debian/changelog trunk/packages/libzeep/trunk/debian/control Log: minor correction Property changes on: trunk/packages/libzeep/trunk/debian ___ Added: mergeWithUpstream + 1 Modified: trunk/packages/libzeep/trunk/debian/changelog === --- trunk/packages/libzeep/trunk/debian/changelog 2013-05-30 14:14:05 UTC (rev 13770) +++ trunk/packages/libzeep/trunk/debian/changelog 2013-05-30 17:46:54 UTC (rev 13771) @@ -1,6 +1,8 @@ libzeep (3.0.0-1) unstable; urgency=low * New upstream release + * debian/control: remove obsolete DM-Upload-Allowed: + * debian/control: set standadrd to 3.9.4 (no changes) -- Maarten L. Hekkelman Wed, 29 May 2013 10:00:00 +0200 Modified: trunk/packages/libzeep/trunk/debian/control === --- trunk/packages/libzeep/trunk/debian/control 2013-05-30 14:14:05 UTC (rev 13770) +++ trunk/packages/libzeep/trunk/debian/control 2013-05-30 17:46:54 UTC (rev 13771) @@ -9,7 +9,7 @@ libboost-regex-dev (>= 1.49.0), libboost-math-dev (>= 1.49.0), libboost-thread-dev (>= 1.49.0) -Standards-Version: 3.9.3 +Standards-Version: 3.9.4 Section: libs Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/libzeep/trunk/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/libzeep/trunk/ ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13770 - trunk/packages/beast-mcmc/tags
Author: tille Date: 2013-05-30 14:14:05 + (Thu, 30 May 2013) New Revision: 13770 Added: trunk/packages/beast-mcmc/tags/1.7.5-1/ Log: Tagged 1.7.5-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13768 - trunk/packages/vxl/trunk/debian/patches
Author: malat Date: 2013-05-30 11:34:59 + (Thu, 30 May 2013) New Revision: 13768 Modified: trunk/packages/vxl/trunk/debian/patches/opencl_kfreebsd.patch Log: Remove invalid char Modified: trunk/packages/vxl/trunk/debian/patches/opencl_kfreebsd.patch === --- trunk/packages/vxl/trunk/debian/patches/opencl_kfreebsd.patch 2013-05-30 11:15:06 UTC (rev 13767) +++ trunk/packages/vxl/trunk/debian/patches/opencl_kfreebsd.patch 2013-05-30 11:34:59 UTC (rev 13768) @@ -9,7 +9,7 @@ #if defined(WIN32) || defined(_WIN32) || defined(__WIN32__) || \ -defined(UNIX) || defined(linux) -+defined(UNIX) || defined(linux) || defined(__FreeBSD_kernel__) ++defined(UNIX) || defined(linux) || defined(__FreeBSD_kernel__) #include #include #define GL_SHARING_EXTENSION "cl_khr_gl_sharing" ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13767 - trunk/packages/python-cogent/tags
Author: tille Date: 2013-05-30 11:15:06 + (Thu, 30 May 2013) New Revision: 13767 Added: trunk/packages/python-cogent/tags/1.5.3-2/ Removed: trunk/packages/python-cogent/tags/1.4.1-1.2/ trunk/packages/python-cogent/tags/1.4.1-1/ trunk/packages/python-cogent/tags/1.5-1/ Log: Tagged 1.5.3-2 and removed those historic tags when cogent was in non-free ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13766 - trunk/packages/python-cogent/trunk/debian
Author: tille Date: 2013-05-30 11:09:18 + (Thu, 30 May 2013) New Revision: 13766 Modified: trunk/packages/python-cogent/trunk/debian/changelog trunk/packages/python-cogent/trunk/debian/rules Log: Add -f option to rm statements to not fail if files to be remove do not exist Modified: trunk/packages/python-cogent/trunk/debian/changelog === --- trunk/packages/python-cogent/trunk/debian/changelog 2013-05-30 08:45:53 UTC (rev 13765) +++ trunk/packages/python-cogent/trunk/debian/changelog 2013-05-30 11:09:18 UTC (rev 13766) @@ -1,3 +1,11 @@ +python-cogent (1.5.3-2) unstable; urgency=low + + * debian/rules: Add -f option to rm statements to not fail if +files to be remove do not exist +Closes: #710339 + + -- Andreas Tille Thu, 30 May 2013 13:02:05 +0200 + python-cogent (1.5.3-1) unstable; urgency=low * New upstream Modified: trunk/packages/python-cogent/trunk/debian/rules === --- trunk/packages/python-cogent/trunk/debian/rules 2013-05-30 08:45:53 UTC (rev 13765) +++ trunk/packages/python-cogent/trunk/debian/rules 2013-05-30 11:09:18 UTC (rev 13766) @@ -22,11 +22,11 @@ dh_auto_build cd doc; $(MAKE) html # remove superfluous files and dirs - rm doc/_build/doctrees/COGENT_LICENSE.doctree - rm doc/_build/html/_sources/COGENT_LICENSE.txt - rm doc/_build/html/_static/jquery.js - rm doc/_build/html/_static/underscore.js - rmdir doc/_build/html/_images/math/ + rm -f doc/_build/doctrees/COGENT_LICENSE.doctree + rm -f doc/_build/html/_sources/COGENT_LICENSE.txt + rm -f doc/_build/html/_static/jquery.js + rm -f doc/_build/html/_static/underscore.js + rm -rf doc/_build/html/_images/math/ override_dh_shlibdeps: dh_shlibdeps ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13765 - in trunk/packages/vxl/trunk/debian: . patches
Author: malat Date: 2013-05-30 08:45:53 + (Thu, 30 May 2013) New Revision: 13765 Added: trunk/packages/vxl/trunk/debian/patches/opencl_kfreebsd.patch Modified: trunk/packages/vxl/trunk/debian/changelog trunk/packages/vxl/trunk/debian/control trunk/packages/vxl/trunk/debian/patches/series Log: Next upload of VXL Modified: trunk/packages/vxl/trunk/debian/changelog === --- trunk/packages/vxl/trunk/debian/changelog 2013-05-30 07:10:50 UTC (rev 13764) +++ trunk/packages/vxl/trunk/debian/changelog 2013-05-30 08:45:53 UTC (rev 13765) @@ -1,3 +1,10 @@ +vxl (1.17.0-5) unstable; urgency=low + + * Use libcoin80-dev for transition + * Fix compilation of opencl module on kFreeBSD + + -- Mathieu Malaterre Thu, 30 May 2013 10:44:57 +0200 + vxl (1.17.0-4) unstable; urgency=low * Fix builds on arm* by removing duplicate symbols Modified: trunk/packages/vxl/trunk/debian/control === --- trunk/packages/vxl/trunk/debian/control 2013-05-30 07:10:50 UTC (rev 13764) +++ trunk/packages/vxl/trunk/debian/control 2013-05-30 08:45:53 UTC (rev 13765) @@ -7,7 +7,7 @@ Andreas Tille Build-Depends: debhelper (>= 9), cmake (>= 2.4.5), libtiff5-dev | libtiff-dev, libdcmtk2-dev, libpng-dev, libjpeg-dev, zlib1g-dev, libexpat-dev, python-dev (>= 2.6.6-3~), - libgeotiff-dev, libcoin60-dev, libdc1394-22-dev [!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386], + libgeotiff-dev, libcoin80-dev, libdc1394-22-dev [!kfreebsd-i386 !kfreebsd-amd64 !hurd-i386], libqt4-dev, libxerces-c-dev, libglu-dev, libqt4-opengl-dev, libshp-dev, opencl-headers, libavifile-0.7-dev, libmpeg2-4-dev, libswscale-dev, libavformat-dev, libavcodec-dev, libbz2-dev, freeglut3-dev, ocl-icd-opencl-dev Standards-Version: 3.9.4 Added: trunk/packages/vxl/trunk/debian/patches/opencl_kfreebsd.patch === --- trunk/packages/vxl/trunk/debian/patches/opencl_kfreebsd.patch (rev 0) +++ trunk/packages/vxl/trunk/debian/patches/opencl_kfreebsd.patch 2013-05-30 08:45:53 UTC (rev 13765) @@ -0,0 +1,15 @@ +Description: file was not portable on kFreeBSD +Author: Mathieu Malaterre +Forwarded: no + +--- vxl-1.17.0.orig/contrib/brl/bbas/bocl/bocl_cl.h vxl-1.17.0/contrib/brl/bbas/bocl/bocl_cl.h +@@ -13,7 +13,7 @@ + // \endverbatim + + #if defined(WIN32) || defined(_WIN32) || defined(__WIN32__) || \ +-defined(UNIX) || defined(linux) ++defined(UNIX) || defined(linux) || defined(__FreeBSD_kernel__) + #include + #include + #define GL_SHARING_EXTENSION "cl_khr_gl_sharing" Modified: trunk/packages/vxl/trunk/debian/patches/series === --- trunk/packages/vxl/trunk/debian/patches/series 2013-05-30 07:10:50 UTC (rev 13764) +++ trunk/packages/vxl/trunk/debian/patches/series 2013-05-30 08:45:53 UTC (rev 13765) @@ -14,3 +14,4 @@ ocl_comp.patch remove_contrib_testing.patch ocl.soname.patch +opencl_kfreebsd.patch ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13763 - trunk/packages/bowtie/trunk/debian
Author: ogi Date: 2013-05-30 07:10:18 + (Thu, 30 May 2013) New Revision: 13763 Modified: trunk/packages/bowtie/trunk/debian/changelog trunk/packages/bowtie/trunk/debian/rules Log: Fixed (hopefully) FTBFS by using override_dh_fixperms-indep target instead of override_dh_fixperms in debian/rules. Modified: trunk/packages/bowtie/trunk/debian/changelog === --- trunk/packages/bowtie/trunk/debian/changelog2013-05-30 06:20:53 UTC (rev 13762) +++ trunk/packages/bowtie/trunk/debian/changelog2013-05-30 07:10:18 UTC (rev 13763) @@ -1,3 +1,10 @@ +bowtie (1.0.0-5) unstable; urgency=low + + * Fixed (hopefully) FTBFS by using override_dh_fixperms-indep target +instead of override_dh_fixperms in debian/rules. + + -- Ognyan Kulev Thu, 30 May 2013 09:41:25 +0300 + bowtie (1.0.0-4) unstable; urgency=low * Lintian fixes: Modified: trunk/packages/bowtie/trunk/debian/rules === --- trunk/packages/bowtie/trunk/debian/rules2013-05-30 06:20:53 UTC (rev 13762) +++ trunk/packages/bowtie/trunk/debian/rules2013-05-30 07:10:18 UTC (rev 13763) @@ -27,10 +27,11 @@ override_dh_compress: dh_compress -X.ebwt -override_dh_fixperms: +# Fix bowtie-examples access mode for files in examples/ +override_dh_fixperms-indep: dh_fixperms chmod 644 debian/bowtie-examples/usr/share/doc/bowtie/examples/indexes/* -# Following line is not needed because gzipped genome (by dh_compress) is always 644. +# Following line is not needed because gzipped genome/ (by dh_compress) is always 644. # chmod 644 debian/bowtie-examples/usr/share/doc/bowtie/examples/genomes/* override_dh_auto_clean: ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13764 - trunk/packages/bowtie/tags
Author: ogi Date: 2013-05-30 07:10:50 + (Thu, 30 May 2013) New Revision: 13764 Added: trunk/packages/bowtie/tags/1.0.0-5/ Log: Tagged 1.0.0-5 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
