[med-svn] r13803 - in trunk/packages/ncbi-blast+/tags: . 2.2.28-2/debian 2.2.28-2/debian/patches
Author: ucko
Date: 2013-06-03 03:34:20 + (Mon, 03 Jun 2013)
New Revision: 13803
Added:
trunk/packages/ncbi-blast+/tags/2.2.28-2/
trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/changelog
trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/control
trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/patches/use_pie_for_apps
trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/rules
Removed:
trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/changelog
trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/control
trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/patches/use_pie_for_apps
trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/rules
Log:
[svn-buildpackage] Tagging ncbi-blast+ 2.2.28-2
Deleted: trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/changelog
===
--- trunk/packages/ncbi-blast+/trunk/debian/changelog 2013-06-02 14:02:48 UTC
(rev 13798)
+++ trunk/packages/ncbi-blast+/tags/2.2.28-2/debian/changelog 2013-06-03
03:34:20 UTC (rev 13803)
@@ -1,161 +0,0 @@
-ncbi-blast+ (2.2.28-1) unstable; urgency=low
-
- * New upstream release
-- Thanks to Tim Booth for package update help.
-
- -- Olivier Sallou Sat, 01 Jun 2013 08:40:51 +0200
-
-ncbi-blast+ (2.2.27-3) unstable; urgency=low
-
- * debian/series: active patch fix_arm_mips_build (Closes: #688661).
-
- -- Olivier Sallou Fri, 05 Oct 2012 11:03:03 +0200
-
-ncbi-blast+ (2.2.27-2) unstable; urgency=low
-
- * debian/patches/fix_arm_mips_build: Fix FTBS on ARM and MIPS
-(Closes: #688661).
- * debian/rules: rename seedtop to seedtop+ to avoid blast2 conflict
-(Closes: #688684).
-
- -- Olivier Sallou Mon, 24 Sep 2012 09:28:29 +0200
-
-ncbi-blast+ (2.2.27-1) unstable; urgency=low
-
- * New upstream release
-
- -- Olivier Sallou Fri, 21 Sep 2012 17:25:41 +0200
-
-ncbi-blast+ (2.2.26-3) unstable; urgency=low
-
- [ Aaron M. Ucko ]
- * debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
-errors and warnings. (Closes: #669679.)
-- Explicitly qualify more dependent names originating in base templates.
-- Directly #include headers as needed.
-- Use modern syntax for making protected base members public.
-- Add forward declarations as needed.
- * Wrap and sort build dependencies to ease maintenance thereof.
- * Enable full hardening flags, introducing a small patch
-(use_pie_for_apps) to reflect the need to build executables and
-libraries differently.
- * Use upstream's new --with-symbols flag in nostrip builds.
-
- [ Andreas Tille ]
- * debian/control: Modernize Vcs-* fields.
-
- -- Aaron M. Ucko Thu, 10 May 2012 23:42:49 -0400
-
-ncbi-blast+ (2.2.26-2) unstable; urgency=low
-
- * debian/patches/wrong_path_to_touch.patch :Fix upstream FTBFS on the Hurd
-hardcodes wrong path to touch (Closes: #663244)
-
- -- Olivier Sallou Wed, 07 Mar 2012 17:29:23 +0100
-
-ncbi-blast+ (2.2.26-1) unstable; urgency=low
-
- [ Olivier Sallou ]
- * New upstream release
- * Remove some patches, applied upstream
-
- [ Andreas Tille]
- * debian/copyright: Added Upstream-Contact
-
- -- Olivier Sallou Wed, 07 Mar 2012 09:37:10 +0100
-
-ncbi-blast+ (2.2.25-7) unstable; urgency=low
-
- * Do not output everything to STDERR in
-c++/src/app/blast/update_blastdb.pl
-Closes: #644237
- * debian/control: Depends s/${python:Depends}/python/ because
-the python dependency of /usr/bin/windowmasker_2.2.22_adapter
-is not detected obviosely
- * debian/copyright: Indentation fixes to get DEP5 compatibility
-
- -- Andreas Tille Wed, 21 Dec 2011 15:47:04 +0100
-
-ncbi-blast+ (2.2.25-6) unstable; urgency=low
-
- * debian/control:
- Luca Capello , fix reference for legacy_blast (Closes:
#642986).
- + add a new line to separate the actual description from usage
- instruction in the long Description:.
- * debian/rules: add gene_info_reader binary in package
-
- -- Olivier Sallou Fri, 30 Sep 2011 12:31:05 -0400
-
-ncbi-blast+ (2.2.25-5) unstable; urgency=low
-
- * Team upload.
- * debian/patches/hurd_fixes: further patch configure(.ac) to reflect
--Wl,rpath,... support. (Closes: #629656.)
- * debian/patches/fix_lib_deps: link makembindex and srsearch against
-libxconnect rather than libconnect for consistency with libblast,
-which uses the former for consistency with other projects.
-
- -- Aaron M. Ucko Mon, 29 Aug 2011 12:31:05 -0400
-
-ncbi-blast+ (2.2.25-4) unstable; urgency=low
-
- [ Aaron M. Ucko ]
- * Team upload.
- * debian/patches/support_other_cpus: belatedly add a descriptive header.
- * debian/patches/hurd_fixes: new; fix hurd-specific issues.
-(In conjunction with the following change, finally closes: #629656.)
- * debian/control:
-- Build-Depends += libc0.3-dev (>= 2.13-9~) [hurd-i386] to avoid #630180.
-- Declare both binary packages as Multi-Arch: foreign.
- * debian/patches/fix_lib_deps: new; ensure that all libraries link against
-all direct dependencies.
[med-svn] r13802 - trunk/packages/ncbi-blast+/trunk/debian
Author: ucko Date: 2013-06-03 03:00:49 + (Mon, 03 Jun 2013) New Revision: 13802 Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog Log: Finalize ncbi-blast+ 2.2.28-2 for upload to unstable. Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog === --- trunk/packages/ncbi-blast+/trunk/debian/changelog 2013-06-03 03:00:27 UTC (rev 13801) +++ trunk/packages/ncbi-blast+/trunk/debian/changelog 2013-06-03 03:00:49 UTC (rev 13802) @@ -1,13 +1,12 @@ -ncbi-blast+ (2.2.28-2) UNRELEASED; urgency=low +ncbi-blast+ (2.2.28-2) unstable; urgency=low - * NOT RELEASED YET. * debian/patches/use_pie_for_apps: Explicitly build all executables with -fPIE -pie, to avoid giving project_tree_builder a partial PIE treatment that now fails on mips and mipsel. (Closes: #710807.) * debian/rules: Retire redundant APP_LDFLAGS override. * Standards-Version: 3.9.4. (Already compliant.) - -- Aaron M. Ucko Sun, 02 Jun 2013 23:00:23 -0400 + -- Aaron M. Ucko Sun, 02 Jun 2013 23:00:44 -0400 ncbi-blast+ (2.2.28-1) unstable; urgency=low ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13801 - trunk/packages/ncbi-blast+/trunk/debian
Author: ucko Date: 2013-06-03 03:00:27 + (Mon, 03 Jun 2013) New Revision: 13801 Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog trunk/packages/ncbi-blast+/trunk/debian/control Log: Standards-Version: 3.9.4. (Already compliant.) Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog === --- trunk/packages/ncbi-blast+/trunk/debian/changelog 2013-06-03 02:59:12 UTC (rev 13800) +++ trunk/packages/ncbi-blast+/trunk/debian/changelog 2013-06-03 03:00:27 UTC (rev 13801) @@ -5,9 +5,10 @@ -fPIE -pie, to avoid giving project_tree_builder a partial PIE treatment that now fails on mips and mipsel. (Closes: #710807.) * debian/rules: Retire redundant APP_LDFLAGS override. + * Standards-Version: 3.9.4. (Already compliant.) + + -- Aaron M. Ucko Sun, 02 Jun 2013 23:00:23 -0400 - -- Aaron M. Ucko Sun, 02 Jun 2013 22:59:08 -0400 - ncbi-blast+ (2.2.28-1) unstable; urgency=low * New upstream release Modified: trunk/packages/ncbi-blast+/trunk/debian/control === --- trunk/packages/ncbi-blast+/trunk/debian/control 2013-06-03 02:59:12 UTC (rev 13800) +++ trunk/packages/ncbi-blast+/trunk/debian/control 2013-06-03 03:00:27 UTC (rev 13801) @@ -11,7 +11,7 @@ quilt, time, zlib1g-dev -Standards-Version: 3.9.3 +Standards-Version: 3.9.4 Uploaders: Olivier Sallou , Andreas Tille Maintainer: Debian Med Packaging Team Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13800 - in trunk/packages/ncbi-blast+/trunk/debian: . patches
Author: ucko Date: 2013-06-03 02:59:12 + (Mon, 03 Jun 2013) New Revision: 13800 Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog trunk/packages/ncbi-blast+/trunk/debian/patches/use_pie_for_apps trunk/packages/ncbi-blast+/trunk/debian/rules Log: * debian/patches/use_pie_for_apps: Explicitly build all executables with -fPIE -pie, to avoid giving project_tree_builder a partial PIE treatment that now fails on mips and mipsel. (Closes: #710807.) * debian/rules: Retire redundant APP_LDFLAGS override. Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog === --- trunk/packages/ncbi-blast+/trunk/debian/changelog 2013-06-03 02:55:44 UTC (rev 13799) +++ trunk/packages/ncbi-blast+/trunk/debian/changelog 2013-06-03 02:59:12 UTC (rev 13800) @@ -1,8 +1,12 @@ ncbi-blast+ (2.2.28-2) UNRELEASED; urgency=low * NOT RELEASED YET. + * debian/patches/use_pie_for_apps: Explicitly build all executables with +-fPIE -pie, to avoid giving project_tree_builder a partial PIE +treatment that now fails on mips and mipsel. (Closes: #710807.) + * debian/rules: Retire redundant APP_LDFLAGS override. - -- Aaron M. Ucko Sun, 02 Jun 2013 22:55:40 -0400 + -- Aaron M. Ucko Sun, 02 Jun 2013 22:59:08 -0400 ncbi-blast+ (2.2.28-1) unstable; urgency=low Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/use_pie_for_apps === --- trunk/packages/ncbi-blast+/trunk/debian/patches/use_pie_for_apps 2013-06-03 02:55:44 UTC (rev 13799) +++ trunk/packages/ncbi-blast+/trunk/debian/patches/use_pie_for_apps 2013-06-03 02:59:12 UTC (rev 13800) @@ -1,13 +1,13 @@ Subject: build executables with -fPIE, not -fPIC -* -fPIC is only useful for shared libraries; substitute -fPIE (to be - accompanied by appropriate APP_LDFLAGS) when building executables. +* -fPIC is only useful for shared libraries; substitute -fPIE (along + with -pie at link time) when building executables. Author: Aaron M. Ucko Last-Update: 2012-05-10 --- a/c++/src/build-system/Makefile.app.in +++ b/c++/src/build-system/Makefile.app.in -@@ -24,8 +24,8 @@ +@@ -24,8 +24,8 @@ default_rule: all ### C/C++ source file compilation (and maybe auto-dependencies) build rules @@ -18,3 +18,12 @@ SOURCES = @UNIX_SRC@ $(SRC) include $(builddir)/Makefile.$(Rules) +@@ -72,7 +72,7 @@ rebuild-libs: + + $(XAPP): $(XOBJ) $(XLIBDEP) + @-$(RM) .$(XAPP).stamp +- $(LINK_WRAPPER) $(LINK) $(LDFLAGS) $(APP_LDFLAGS) $(XOBJ) $(XOBJ2) $(PRE_LIBS) $(XLIB) $(XAPP_LIBS) @f_outexe@$(XAPP) $(LINK_FILTER) ++ $(LINK_WRAPPER) $(LINK) $(LDFLAGS) $(APP_LDFLAGS) -fPIE -pie $(XOBJ) $(XOBJ2) $(PRE_LIBS) $(XLIB) $(XAPP_LIBS) @f_outexe@$(XAPP) $(LINK_FILTER) + $(STRIP) $(XAPP) + $(POST_LINK) $(XAPP) + ifneq "$(BINCOPY)" "@:" Modified: trunk/packages/ncbi-blast+/trunk/debian/rules === --- trunk/packages/ncbi-blast+/trunk/debian/rules 2013-06-03 02:55:44 UTC (rev 13799) +++ trunk/packages/ncbi-blast+/trunk/debian/rules 2013-06-03 02:59:12 UTC (rev 13800) @@ -42,8 +42,7 @@ override_dh_auto_build: cd c++/BUILD/build && \ - make -f Makefile.flat all_projects="$(proj)" \ - APP_LDFLAGS='-Wl,-E -fPIE -pie' + make -f Makefile.flat all_projects="$(proj)" override_dh_auto_test: -dh_auto_test ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13799 - trunk/packages/ncbi-blast+/trunk/debian
Author: ucko Date: 2013-06-03 02:55:44 + (Mon, 03 Jun 2013) New Revision: 13799 Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog Log: Start work on ncbi-blast+ 2.2.28-2, to fix mips* FTBFS (#710807). Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog === --- trunk/packages/ncbi-blast+/trunk/debian/changelog 2013-06-02 14:02:48 UTC (rev 13798) +++ trunk/packages/ncbi-blast+/trunk/debian/changelog 2013-06-03 02:55:44 UTC (rev 13799) @@ -1,3 +1,9 @@ +ncbi-blast+ (2.2.28-2) UNRELEASED; urgency=low + + * NOT RELEASED YET. + + -- Aaron M. Ucko Sun, 02 Jun 2013 22:55:40 -0400 + ncbi-blast+ (2.2.28-1) unstable; urgency=low * New upstream release ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Debian Wiki] Update of "DebianMed/Developers" by AndreasTille
Dear Wiki user, You have subscribed to a wiki page or wiki category on "Debian Wiki" for change notification. The "DebianMed/Developers" page has been changed by AndreasTille: http://wiki.debian.org/DebianMed/Developers?action=diff&rev1=24&rev2=25 Comment: add Ognyan Kulev ||Michael Hanke ||mih|| || yes || yes |||| ||Miriam Ruiz ||miriam ||no || yes || |||| ||Nelson A. de Oliveira ||naoliv ||yes || yes || yes |||| + ||Ognyan Kulev ||ogi|| || || |||| ||Olivier Sallou||osallou||yes || yes || yes |||| ||Philipp Benner||philipp||yes || yes || yes |||| ||Rudi Cilibrasi||cilibrar || || || no ||Resigned from Debian|| ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13798 - trunk/packages/autodocksuite/trunk/debian
Author: alteholz Date: 2013-06-02 14:02:48 + (Sun, 02 Jun 2013) New Revision: 13798 Added: trunk/packages/autodocksuite/trunk/debian/autodock.lintian-overrides Modified: trunk/packages/autodocksuite/trunk/debian/changelog trunk/packages/autodocksuite/trunk/debian/control trunk/packages/autodocksuite/trunk/debian/rules Log: move package from experimental to unstable Added: trunk/packages/autodocksuite/trunk/debian/autodock.lintian-overrides === --- trunk/packages/autodocksuite/trunk/debian/autodock.lintian-overrides (rev 0) +++ trunk/packages/autodocksuite/trunk/debian/autodock.lintian-overrides 2013-06-02 14:02:48 UTC (rev 13798) @@ -0,0 +1,2 @@ +# In this context Ang means Angstrom +autodock: spelling-error-in-binary usr/bin/autodock4 Ang And Modified: trunk/packages/autodocksuite/trunk/debian/changelog === --- trunk/packages/autodocksuite/trunk/debian/changelog 2013-06-02 09:57:40 UTC (rev 13797) +++ trunk/packages/autodocksuite/trunk/debian/changelog 2013-06-02 14:02:48 UTC (rev 13798) @@ -1,3 +1,12 @@ +autodocksuite (4.2.5.1-3) unstable; urgency=low + + * move package from experimental to unstable + * debian/copntrol: set standard to 3.9.4 (no changes) + * debian/autodock.lintian-overrides: added for wrong spelling error + * debian/rules: add call to dh_lintian + + -- Thorsten Alteholz Sun, 02 Jun 2013 13:00:00 +0200 + autodocksuite (4.2.5.1-2) experimental; urgency=low * debian/rules: remove lto flags again, does not really work Modified: trunk/packages/autodocksuite/trunk/debian/control === --- trunk/packages/autodocksuite/trunk/debian/control 2013-06-02 09:57:40 UTC (rev 13797) +++ trunk/packages/autodocksuite/trunk/debian/control 2013-06-02 14:02:48 UTC (rev 13798) @@ -8,7 +8,7 @@ Andreas Tille , Thorsten Alteholz Build-Depends: debhelper (>= 7), automake, csh -Standards-Version: 3.9.3 +Standards-Version: 3.9.4 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/autodocksuite/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/autodocksuite/trunk/ Homepage: http://autodock.scripps.edu/ Modified: trunk/packages/autodocksuite/trunk/debian/rules === --- trunk/packages/autodocksuite/trunk/debian/rules 2013-06-02 09:57:40 UTC (rev 13797) +++ trunk/packages/autodocksuite/trunk/debian/rules 2013-06-02 14:02:48 UTC (rev 13798) @@ -101,6 +101,7 @@ binary-common: dh_testdir dh_testroot + dh_lintian dh_installchangelogs autodock/RELEASENOTES dh_installdocs dh_installexamples ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13797 - trunk/packages/qrisk2/trunk/debian
Author: alteholz Date: 2013-06-02 09:57:40 + (Sun, 02 Jun 2013) New Revision: 13797 Added: trunk/packages/qrisk2/trunk/debian/Q77_qrisk2_2013_0_commandLine.1 trunk/packages/qrisk2/trunk/debian/Q77_qrisk2_2013_1_commandLine.1 Modified: trunk/packages/qrisk2/trunk/debian/qrisk2.lintian-overrides trunk/packages/qrisk2/trunk/debian/qrisk2.manpages Log: new manpages and adapted overrides Copied: trunk/packages/qrisk2/trunk/debian/Q77_qrisk2_2013_0_commandLine.1 (from rev 13765, trunk/packages/qrisk2/trunk/debian/Q68_qrisk2_2012_1_0_commandLine.1) === --- trunk/packages/qrisk2/trunk/debian/Q77_qrisk2_2013_0_commandLine.1 (rev 0) +++ trunk/packages/qrisk2/trunk/debian/Q77_qrisk2_2013_0_commandLine.1 2013-06-02 09:57:40 UTC (rev 13797) @@ -0,0 +1,67 @@ +.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.41.2. +.TH Q77_QRISK2_2013_0_COMMANDLINE "1" "June 2013" "Q77_qrisk2_2013_0_commandLine * Copyright 2013 ClinRisk Ltd." "User Commands" +.SH NAME +Q77_qrisk2_2013_0_commandLine \- female version of 2013 risk analysis +.SS "Usage:" +.IP +Q77_qrisk2_2013_0_commandLine age b_AF b_ra b_renal b_treatedhyp b_type1 b_type2 bmi ethrisk fh_cvd rati sbp smoke_cat surv town +.TP +\fBage\fR age of person (30..84) +.TP +\fBb_AF\fR Atrial fibrillation (0..1) +.TP +\fBb_ra\fR Rheumatoid arthritis (0..1) +.TP +\fBb_renal\fR +.TP +\fBb_treatedhyp\fR On blood pressure treatment (0..1) +.TP +\fBb_type1\fR Diabetic type 1 (0..1) +.TP +\fBb_type2\fR Diabetic type 2 (0..1) +.TP +\fBbmi\fR Body Mass Index (20..40) +.TP +\fBethrisk\fR Ethnicity +.IP +\fB1\fR white or not stated +.IP +\fB2\fR Indian +.IP +\fB3\fR Pakistani +.IP +\fB4\fR Bangladeshi +.IP +\fB5\fR Other Asian +.IP +\fB6\fR Black Caribbean +.IP +\fB7\fR Black African +.IP +\fB8\fR Chinese +.IP +\fB9\fR Other ethnic group +.TP +\fBfh_cvd\fR +.TP +\fBrati\fR Cholesterol/HDL ratio (1..12) +.TP +\fBsbp\fR Systolic blood pressure (mmHg) (70..210) +.TP +\fBsmoke_cat\fR Smoking status (0..4) +.IP +\fB0\fR non smoker +.IP +\fB1\fR ex smoker +.IP +\fB2\fR light smoker (<10) +.IP +\fB3\fR moderate smoker (10..19) +.IP +\fB4\fR heavy smoker >=20 +.TP +\fBsurv\fR +.TP +\fBtown\fR UK postcode + +.IP Copied: trunk/packages/qrisk2/trunk/debian/Q77_qrisk2_2013_1_commandLine.1 (from rev 13765, trunk/packages/qrisk2/trunk/debian/Q68_qrisk2_2012_1_1_commandLine.1) === --- trunk/packages/qrisk2/trunk/debian/Q77_qrisk2_2013_1_commandLine.1 (rev 0) +++ trunk/packages/qrisk2/trunk/debian/Q77_qrisk2_2013_1_commandLine.1 2013-06-02 09:57:40 UTC (rev 13797) @@ -0,0 +1,67 @@ +.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.41.2. +.TH Q77_QRISK2_2013_1_COMMANDLINE "1" "June 2013" "Q77_qrisk2_2013_1_commandLine * Copyright 2013 ClinRisk Ltd." "User Commands" +.SH NAME +Q77_qrisk2_2013_1_commandLine \- male version of 2013 risk analysis +.SS "Usage:" +.IP +Q77_qrisk2_2013_1_commandLine age b_AF b_ra b_renal b_treatedhyp b_type1 b_type2 bmi ethrisk fh_cvd rati sbp smoke_cat surv town +.TP +\fBage\fR age of person (30..84) +.TP +\fBb_AF\fR Atrial fibrillation (0..1) +.TP +\fBb_ra\fR Rheumatoid arthritis (0..1) +.TP +\fBb_renal\fR +.TP +\fBb_treatedhyp\fR On blood pressure treatment (0..1) +.TP +\fBb_type1\fR Diabetic type 1 (0..1) +.TP +\fBb_type2\fR Diabetic type 2 (0..1) +.TP +\fBbmi\fR Body Mass Index (20..40) +.TP +\fBethrisk\fR Ethnicity +.IP +\fB1\fR white or not stated +.IP +\fB2\fR Indian +.IP +\fB3\fR Pakistani +.IP +\fB4\fR Bangladeshi +.IP +\fB5\fR Other Asian +.IP +\fB6\fR Black Caribbean +.IP +\fB7\fR Black African +.IP +\fB8\fR Chinese +.IP +\fB9\fR Other ethnic group +.TP +\fBfh_cvd\fR +.TP +\fBrati\fR Cholesterol/HDL ratio (1..12) +.TP +\fBsbp\fR Systolic blood pressure (mmHg) (70..210) +.TP +\fBsmoke_cat\fR Smoking status (0..4) +.IP +\fB0\fR non smoker +.IP +\fB1\fR ex smoker +.IP +\fB2\fR light smoker (<10) +.IP +\fB3\fR moderate smoker (10..19) +.IP +\fB4\fR heavy smoker >=20 +.TP +\fBsurv\fR +.TP +\fBtown\fR UK postcode + +.IP Modified: trunk/packages/qrisk2/trunk/debian/qrisk2.lintian-overrides === --- trunk/packages/qrisk2/trunk/debian/qrisk2.lintian-overrides 2013-06-01 20:50:18 UTC (rev 13796) +++ trunk/packages/qrisk2/trunk/debian/qrisk2.lintian-overrides 2013-06-02 09:57:40 UTC (rev 13797) @@ -1,4 +1,4 @@ # these flags are really used -qrisk2: hardening-no-fortify-functions usr/bin/Q68_qrisk2_2012_1_0_commandLine -qrisk2: hardening-no-fortify-functions usr/bin/Q68_qrisk2_2012_1_1_commandLine +qrisk2: hardening-no-fortify-functions usr/bin/Q77_qrisk2_2013_0_commandLine +qrisk2: hardening-no-fortify-functions usr/bin/Q77_qrisk2_2013_1_commandLine Modified: trunk/packages/qrisk2/trunk/debian/qrisk2.m
[med-svn] [SCM] picard-tools branch, master, updated. debian/1.90-1-1-g14b4ee4
The following commit has been merged in the master branch: commit 14b4ee484be383c607cf96deaa875ed5d2aa7c6d Author: Olivier Sallou Date: Sun Jun 2 10:58:27 2013 +0200 move to unstable diff --git a/debian/changelog b/debian/changelog index 4a26dd3..9e56d57 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9 @@ +picard-tools (1.90-2) unstable; urgency=low + + * Load in unstable, all deps are available. + + -- Olivier Sallou Sun, 02 Jun 2013 10:57:05 +0200 + picard-tools (1.90-1) experimental; urgency=low * New upstream release -- manipulate SAM and BAM files ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] picard-tools annotated tag, debian/1.90-2, created. debian/1.90-2
The annotated tag, debian/1.90-2 has been created at 58c03162fd2ab66bfdced74fe7272558e37be222 (tag) tagging 14b4ee484be383c607cf96deaa875ed5d2aa7c6d (commit) replaces debian/1.90-1 tagged by Olivier Sallou on Sun Jun 2 11:05:43 2013 +0200 - Shortlog picard-tools Debian release 1.90-2 Olivier Sallou (1): move to unstable --- -- manipulate SAM and BAM files ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
