[med-svn] r14673 - trunk/packages/alien-hunter/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 15:17:33 + (Thu, 12 Sep 2013)
New Revision: 14673

Modified:
   trunk/packages/alien-hunter/trunk/debian/changelog
   trunk/packages/alien-hunter/trunk/debian/control
Log:
drop quilt from Build-Depends


Modified: trunk/packages/alien-hunter/trunk/debian/changelog
===
--- trunk/packages/alien-hunter/trunk/debian/changelog  2013-09-12 15:15:52 UTC 
(rev 14672)
+++ trunk/packages/alien-hunter/trunk/debian/changelog  2013-09-12 15:17:33 UTC 
(rev 14673)
@@ -13,6 +13,7 @@
  - cme fix dpkg-control
  - debhelper 9
  - anonscm in Vcs fields
+ - drop quilt from Build-Depends
 
  -- Andreas Tille   Thu, 12 Sep 2013 17:16:21 +0200
 

Modified: trunk/packages/alien-hunter/trunk/debian/control
===
--- trunk/packages/alien-hunter/trunk/debian/control2013-09-12 15:15:52 UTC 
(rev 14672)
+++ trunk/packages/alien-hunter/trunk/debian/control2013-09-12 15:17:33 UTC 
(rev 14673)
@@ -5,8 +5,7 @@
 Priority: optional
 Build-Depends: debhelper (>= 9),
libbiojava-java,
-   default-jdk,
-   quilt
+   default-jdk
 Standards-Version: 3.9.4
 Vcs-Browser: 
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/alien-hunter/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/alien-hunter/trunk/


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[med-svn] r14679 - trunk/packages/alien-hunter/tags

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 17:55:17 + (Thu, 12 Sep 2013)
New Revision: 14679

Added:
   trunk/packages/alien-hunter/tags/1.7-2/
Log:
Tagged 1.7-2



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[med-svn] r14669 - in trunk/packages/srf/trunk/debian: . source

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 14:49:43 + (Thu, 12 Sep 2013)
New Revision: 14669

Added:
   trunk/packages/srf/trunk/debian/source/
   trunk/packages/srf/trunk/debian/source/format
Modified:
   trunk/packages/srf/trunk/debian/changelog
Log:
Upload to unstable


Modified: trunk/packages/srf/trunk/debian/changelog
===
--- trunk/packages/srf/trunk/debian/changelog   2013-09-12 13:50:18 UTC (rev 
14668)
+++ trunk/packages/srf/trunk/debian/changelog   2013-09-12 14:49:43 UTC (rev 
14669)
@@ -1,4 +1,4 @@
-srf (0.1+dfsg-2) UNRELEASED; urgency=low
+srf (0.1+dfsg-2) unstable; urgency=low
 
   * Update to recent packaging standards and rebuild
   * debian/source/format: 3.0 (quilt)

Added: trunk/packages/srf/trunk/debian/source/format
===
--- trunk/packages/srf/trunk/debian/source/format   
(rev 0)
+++ trunk/packages/srf/trunk/debian/source/format   2013-09-12 14:49:43 UTC 
(rev 14669)
@@ -0,0 +1 @@
+3.0 (quilt)


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[med-svn] r14672 - trunk/packages/alien-hunter/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 15:15:52 + (Thu, 12 Sep 2013)
New Revision: 14672

Modified:
   trunk/packages/alien-hunter/trunk/debian/changelog
   trunk/packages/alien-hunter/trunk/debian/compat
   trunk/packages/alien-hunter/trunk/debian/control
Log:
  * debian/control:
 - cme fix dpkg-control
 - debhelper 9
 - anonscm in Vcs fields



Modified: trunk/packages/alien-hunter/trunk/debian/changelog
===
--- trunk/packages/alien-hunter/trunk/debian/changelog  2013-09-12 15:13:05 UTC 
(rev 14671)
+++ trunk/packages/alien-hunter/trunk/debian/changelog  2013-09-12 15:15:52 UTC 
(rev 14672)
@@ -9,6 +9,10 @@
   * debian/upstream: Removed duplicated information, reordering
   * debian/copyright: DEP5
   * debian/source/format: 3.0 (quilt)
+  * debian/control:
+ - cme fix dpkg-control
+ - debhelper 9
+ - anonscm in Vcs fields
 
  -- Andreas Tille   Thu, 12 Sep 2013 17:16:21 +0200
 

Modified: trunk/packages/alien-hunter/trunk/debian/compat
===
--- trunk/packages/alien-hunter/trunk/debian/compat 2013-09-12 15:13:05 UTC 
(rev 14671)
+++ trunk/packages/alien-hunter/trunk/debian/compat 2013-09-12 15:15:52 UTC 
(rev 14672)
@@ -1 +1 @@
-7
+9

Modified: trunk/packages/alien-hunter/trunk/debian/control
===
--- trunk/packages/alien-hunter/trunk/debian/control2013-09-12 15:13:05 UTC 
(rev 14671)
+++ trunk/packages/alien-hunter/trunk/debian/control2013-09-12 15:15:52 UTC 
(rev 14672)
@@ -1,19 +1,27 @@
 Source: alien-hunter
+Maintainer: Debian Med Packaging Team 

+Uploaders: Andreas Tille 
 Section: science
 Priority: optional
-Maintainer: Debian Med Packaging Team 

-DM-Upload-Allowed: yes
-Uploaders: Andreas Tille 
-Build-Depends: debhelper (>= 7.1), libbiojava-java, default-jdk, quilt
-Standards-Version: 3.8.3
+Build-Depends: debhelper (>= 9),
+   libbiojava-java,
+   default-jdk,
+   quilt
+Standards-Version: 3.9.4
+Vcs-Browser: 
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/alien-hunter/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/alien-hunter/trunk/
 Homepage: http://www.sanger.ac.uk/resources/software/alien_hunter.html
-Vcs-Browser: 
http://svn.debian.org/wsvn/debian-med/trunk/packages/alien-hunter/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/alien-hunter/trunk/
 
 Package: alien-hunter
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, libbytecode-java, libbiojava-java,
- libcommons-cli-java, libcommons-collections-java, libcommons-dbcp-java, 
libcommons-pool-java
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ libbytecode-java,
+ libbiojava-java,
+ libcommons-cli-java,
+ libcommons-collections-java,
+ libcommons-dbcp-java,
+ libcommons-pool-java
 Suggests: bioperl
 Description: Interpolated Variable Order Motifs to identify horizontally 
acquired DNA
  Alien_hunter is an application for the prediction of putative


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[med-svn] r14678 - trunk/packages/alien-hunter/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 17:54:41 + (Thu, 12 Sep 2013)
New Revision: 14678

Modified:
   trunk/packages/alien-hunter/trunk/debian/changelog
Log:
Upload to unstable


Modified: trunk/packages/alien-hunter/trunk/debian/changelog
===
--- trunk/packages/alien-hunter/trunk/debian/changelog  2013-09-12 17:42:43 UTC 
(rev 14677)
+++ trunk/packages/alien-hunter/trunk/debian/changelog  2013-09-12 17:54:41 UTC 
(rev 14678)
@@ -1,4 +1,4 @@
-alien-hunter (1.7-2) UNRELEASED; urgency=low
+alien-hunter (1.7-2) unstable; urgency=low
 
   [ Charles Plessy ]
   * Documented information in ‘debian/upstream’.


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[med-svn] r14674 - trunk/packages/alien-hunter/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 15:23:00 + (Thu, 12 Sep 2013)
New Revision: 14674

Modified:
   trunk/packages/alien-hunter/trunk/debian/rules
Log:
Quilt needs to be removed also from d/rules


Modified: trunk/packages/alien-hunter/trunk/debian/rules
===
--- trunk/packages/alien-hunter/trunk/debian/rules  2013-09-12 15:17:33 UTC 
(rev 14673)
+++ trunk/packages/alien-hunter/trunk/debian/rules  2013-09-12 15:23:00 UTC 
(rev 14674)
@@ -6,7 +6,7 @@
 executable=alien_hunter
 
 %:
-   dh --with quilt $@
+   dh $@
 
 override_dh_auto_build:
CLASSPATH=/usr/share/java/biojava.jar javac -Xlint:deprecation 
-Xlint:unchecked *.java


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[med-svn] r14670 - trunk/packages/srf/tags

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 14:50:24 + (Thu, 12 Sep 2013)
New Revision: 14670

Added:
   trunk/packages/srf/tags/0.1+dfsg-2/
Log:
Tagged 0.1+dfsg-2



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[med-svn] r14676 - trunk/packages/alien-hunter/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 16:55:53 + (Thu, 12 Sep 2013)
New Revision: 14676

Modified:
   trunk/packages/alien-hunter/trunk/debian/copyright
Log:
Encoding


Modified: trunk/packages/alien-hunter/trunk/debian/copyright
===
--- trunk/packages/alien-hunter/trunk/debian/copyright  2013-09-12 16:55:19 UTC 
(rev 14675)
+++ trunk/packages/alien-hunter/trunk/debian/copyright  2013-09-12 16:55:53 UTC 
(rev 14676)
@@ -4,7 +4,7 @@
 Source: http://www.sanger.ac.uk/Software/analysis/alien_hunter/
 
 Files: *
-Copyright : © 2006-2008 George Vernikos
+Copyright: 2006-2008 George Vernikos
 License: GPL2
 
 License: GPL2
@@ -26,5 +26,5 @@
  /usr/share/common-licenses/GPL
 
 Files: debian/*
-Copyright: © 2009 Andreas Tille 
+Copyright: 2009 Andreas Tille 
 License: GPL2


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[med-svn] r14671 - in trunk/packages/alien-hunter/trunk/debian: . source

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 15:13:05 + (Thu, 12 Sep 2013)
New Revision: 14671

Added:
   trunk/packages/alien-hunter/trunk/debian/source/
   trunk/packages/alien-hunter/trunk/debian/source/format
Modified:
   trunk/packages/alien-hunter/trunk/debian/changelog
Log:
debian/source/format: 3.0 (quilt)


Modified: trunk/packages/alien-hunter/trunk/debian/changelog
===
--- trunk/packages/alien-hunter/trunk/debian/changelog  2013-09-12 14:50:24 UTC 
(rev 14670)
+++ trunk/packages/alien-hunter/trunk/debian/changelog  2013-09-12 15:13:05 UTC 
(rev 14671)
@@ -8,8 +8,9 @@
   [ Andreas Tille ]
   * debian/upstream: Removed duplicated information, reordering
   * debian/copyright: DEP5
+  * debian/source/format: 3.0 (quilt)
 
- -- Andreas Tille   Fri, 24 Aug 2012 09:48:06 +0200
+ -- Andreas Tille   Thu, 12 Sep 2013 17:16:21 +0200
 
 alien-hunter (1.7-1) unstable; urgency=low
 

Added: trunk/packages/alien-hunter/trunk/debian/source/format
===
--- trunk/packages/alien-hunter/trunk/debian/source/format  
(rev 0)
+++ trunk/packages/alien-hunter/trunk/debian/source/format  2013-09-12 
15:13:05 UTC (rev 14671)
@@ -0,0 +1 @@
+3.0 (quilt)


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[med-svn] r14675 - trunk/packages/alien-hunter/trunk/debian/patches

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 16:55:19 + (Thu, 12 Sep 2013)
New Revision: 14675

Modified:
   trunk/packages/alien-hunter/trunk/debian/patches/10_fix_classpath.patch
   trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch
Log:
Patch descriptions


Modified: 
trunk/packages/alien-hunter/trunk/debian/patches/10_fix_classpath.patch
===
--- trunk/packages/alien-hunter/trunk/debian/patches/10_fix_classpath.patch 
2013-09-12 15:23:00 UTC (rev 14674)
+++ trunk/packages/alien-hunter/trunk/debian/patches/10_fix_classpath.patch 
2013-09-12 16:55:19 UTC (rev 14675)
@@ -1,3 +1,7 @@
+Author: Andreas Tille 
+Date: Wed, 14 Oct 2009 11:41:51 +0200
+Description: Set CLASSPATH properly
+
 --- alien_hunter-1.7.orig/alien_hunter
 +++ alien_hunter-1.7/alien_hunter
 @@ -27,14 +27,14 @@

Modified: 
trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch
===
--- trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch  
2013-09-12 15:23:00 UTC (rev 14674)
+++ trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch  
2013-09-12 16:55:19 UTC (rev 14675)
@@ -1,3 +1,7 @@
+Author: Andreas Tille 
+Date: Wed, 14 Oct 2009 11:41:51 +0200
+Description: Do not point to /usr/local
+
 --- alien_hunter-1.7.orig/alien_hunter.pl
 +++ alien_hunter-1.7/alien_hunter.pl
 @@ -1,4 +1,3 @@


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[med-svn] r14677 - trunk/packages/dssp/trunk/debian

2013-09-12 Thread Thorsten Alteholz 
Author: alteholz
Date: 2013-09-12 17:42:43 + (Thu, 12 Sep 2013)
New Revision: 14677

Modified:
   trunk/packages/dssp/trunk/debian/control
Log:
use canonical vcs

Modified: trunk/packages/dssp/trunk/debian/control
===
--- trunk/packages/dssp/trunk/debian/control2013-09-12 16:55:53 UTC (rev 
14676)
+++ trunk/packages/dssp/trunk/debian/control2013-09-12 17:42:43 UTC (rev 
14677)
@@ -12,8 +12,8 @@
libboost-thread-dev (>= 1.42.0)
 Standards-Version: 3.9.4
 Section: science
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/dssp/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/dssp/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/dssp/trunk/
+Vcs-Browser: 
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/dssp/trunk/
 Homepage: http://www.cmbi.ru.nl/dssp.html
 
 Package: dssp


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[med-svn] r14667 - trunk/packages/srf/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 13:44:18 + (Thu, 12 Sep 2013)
New Revision: 14667

Modified:
   trunk/packages/srf/trunk/debian/changelog
   trunk/packages/srf/trunk/debian/control
   trunk/packages/srf/trunk/debian/rules
   trunk/packages/srf/trunk/debian/watch
Log:
Short dh; mangle version in d/watch


Modified: trunk/packages/srf/trunk/debian/changelog
===
--- trunk/packages/srf/trunk/debian/changelog   2013-09-12 13:22:16 UTC (rev 
14666)
+++ trunk/packages/srf/trunk/debian/changelog   2013-09-12 13:44:18 UTC (rev 
14667)
@@ -7,6 +7,9 @@
  - Add myself to uploaders
  - debhelper 9
  - anonscm in VCS fields
+ - drop cdbs+quilt from Build-Depends
+  * debian/rules: short dh
+  * debian/watch: mangle version
 
  -- Andreas Tille   Thu, 12 Sep 2013 14:13:46 +0200
 

Modified: trunk/packages/srf/trunk/debian/control
===
--- trunk/packages/srf/trunk/debian/control 2013-09-12 13:22:16 UTC (rev 
14666)
+++ trunk/packages/srf/trunk/debian/control 2013-09-12 13:44:18 UTC (rev 
14667)
@@ -4,9 +4,7 @@
Andreas Tille 
 Section: science
 Priority: optional
-Build-Depends: cdbs,
-   quilt,
-   debhelper (>= 9),
+Build-Depends: debhelper (>= 9),
autotools-dev,
libcurl4-gnutls-dev,
libstaden-read-dev

Modified: trunk/packages/srf/trunk/debian/rules
===
--- trunk/packages/srf/trunk/debian/rules   2013-09-12 13:22:16 UTC (rev 
14666)
+++ trunk/packages/srf/trunk/debian/rules   2013-09-12 13:44:18 UTC (rev 
14667)
@@ -1,7 +1,7 @@
 #!/usr/bin/make -f
 
-DEB_COMPRESS_EXCLUDE = .pdf
+%:
+   dh $@
 
-include /usr/share/cdbs/1/rules/patchsys-quilt.mk
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/autotools.mk
+override_dh_compress:
+   dh_compress --exclude=.pdf

Modified: trunk/packages/srf/trunk/debian/watch
===
--- trunk/packages/srf/trunk/debian/watch   2013-09-12 13:22:16 UTC (rev 
14666)
+++ trunk/packages/srf/trunk/debian/watch   2013-09-12 13:44:18 UTC (rev 
14667)
@@ -1,2 +1,3 @@
 version=3
-http://sf.net/srf/srf-v([\d\.]*)\.tar\.gz
+opts=dversionmangle=s/(\+dfsg)// \
+  http://sf.net/srf/srf-v([\d\.]*)\.tar\.gz


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[med-svn] r14668 - trunk/packages/srf/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 13:50:18 + (Thu, 12 Sep 2013)
New Revision: 14668

Modified:
   trunk/packages/srf/trunk/debian/changelog
   trunk/packages/srf/trunk/debian/copyright
Log:
DEP5 copyright


Modified: trunk/packages/srf/trunk/debian/changelog
===
--- trunk/packages/srf/trunk/debian/changelog   2013-09-12 13:44:18 UTC (rev 
14667)
+++ trunk/packages/srf/trunk/debian/changelog   2013-09-12 13:50:18 UTC (rev 
14668)
@@ -10,6 +10,7 @@
  - drop cdbs+quilt from Build-Depends
   * debian/rules: short dh
   * debian/watch: mangle version
+  * debian/copyright: DEP5
 
  -- Andreas Tille   Thu, 12 Sep 2013 14:13:46 +0200
 

Modified: trunk/packages/srf/trunk/debian/copyright
===
--- trunk/packages/srf/trunk/debian/copyright   2013-09-12 13:44:18 UTC (rev 
14667)
+++ trunk/packages/srf/trunk/debian/copyright   2013-09-12 13:50:18 UTC (rev 
14668)
@@ -1,51 +1,28 @@
-Machine-readable license summary, see ’http://dep.debian.net/deps/dep5’.
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: SRF
+Upstream-Contact:  http://www.bcgsc.ca/mailman/listinfo/ssrformat
+Source: http://downloads.sourceforge.net/project/srf/srf/v0.1/srf-v0.1.tar.gz
 
-Name  :  SRF
-Contact   :  http://www.bcgsc.ca/mailman/listinfo/ssrformat
-Source:  
http://downloads.sourceforge.net/project/srf/srf/v0.1/srf-v0.1.tar.gz
+Files: *
+Copyright: 2007, Asim Siddiqui
+License:  Apache-2.0
 
-
-Copyright :  2007, Asim Siddiqui
-License   :  Apache-2.0
-   
-   
-   Licensed under the Apache License, Version 2.0 (the "License");
-   you may not use this file except in compliance with the License.
-   You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
-   Unless required by applicable law or agreed to in writing, software
-   distributed under the License is distributed on an "AS IS" BASIS,
-   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-   See the License for the specific language governing permissions and
-   limitations under the License.
-
-
-On Debian systems, the complete text of the Apache license version 2 is
-distributed in the file ’/usr/share/common-licenses/Apache-2.0’.
-
-
-File  :  src/SRF_util.cc
-Copyright :  Genome Research Ltd (GRL).
-License   : GRL
+Files:  src/SRF_util.cc
+Copyright:  Genome Research Ltd (GRL).
+License: GRL
  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:
- 
- * Redistributions of source code must retain the above copyright
-   notice, this list of conditions and the following disclaimer.
- 
- * Redistributions in binary form must reproduce the above
-   copyright notice, this list of conditions and the following
-   disclaimer in the documentation and/or other materials
-   provided with the distribution.
- 
- * Neither the name of the Genome Research Limited nor the
-   names of its contributors may be used to endorse or promote
-   products derived from this software without specific prior
-   written permission.
- 
+  * Redistributions of source code must retain the above copyright
+notice, this list of conditions and the following disclaimer.
+  * Redistributions in binary form must reproduce the above
+copyright notice, this list of conditions and the following
+disclaimer in the documentation and/or other materials
+provided with the distribution.
+  * Neither the name of the Genome Research Limited nor the
+names of its contributors may be used to endorse or promote
+products derived from this software without specific prior
+written permission.
  THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR
  IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
  WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -57,7 +34,29 @@
  STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
  ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
  OF THE POSSIBILITY OF SUCH DAMAGE.
+ .
+ The upstream autor of src/SRF_util.cc confirmed in a private email that the
+ current license the original program where it was taken from, the Staden
+ io-lib, applies instead of the non-free statement contained in the file 
itself. 
 
-The upstream autor of src/SRF_util.cc confirmed in a private email that the
-current license the original program where it was taken from, the Staden
-io-lib, applies instead of the non-free statement contained in the file 
itself. 
+Files: debian/*
+Copyright: © 2009 Charles Plessy 
+   © 2013 Andreas Tille 
+License:  Apache-2.0
+
+License:  Apache-2.0
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ You may obtain a copy

[med-svn] r14666 - trunk/packages/srf/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 13:22:16 + (Thu, 12 Sep 2013)
New Revision: 14666

Modified:
   trunk/packages/srf/trunk/debian/changelog
   trunk/packages/srf/trunk/debian/compat
   trunk/packages/srf/trunk/debian/control
Log:
Update very old packaging style to get rid of broken Vcs fields, and other 
nasty outdated things


Modified: trunk/packages/srf/trunk/debian/changelog
===
--- trunk/packages/srf/trunk/debian/changelog   2013-09-12 09:21:51 UTC (rev 
14665)
+++ trunk/packages/srf/trunk/debian/changelog   2013-09-12 13:22:16 UTC (rev 
14666)
@@ -1,3 +1,15 @@
+srf (0.1+dfsg-2) UNRELEASED; urgency=low
+
+  * Update to recent packaging standards and rebuild
+  * debian/source/format: 3.0 (quilt)
+  * debian/control:
+ - cme fix dpkg-control
+ - Add myself to uploaders
+ - debhelper 9
+ - anonscm in VCS fields
+
+ -- Andreas Tille   Thu, 12 Sep 2013 14:13:46 +0200
+
 srf (0.1+dfsg-1) unstable; urgency=low
 
   * Initial release (Closes: #489983)

Modified: trunk/packages/srf/trunk/debian/compat
===
--- trunk/packages/srf/trunk/debian/compat  2013-09-12 09:21:51 UTC (rev 
14665)
+++ trunk/packages/srf/trunk/debian/compat  2013-09-12 13:22:16 UTC (rev 
14666)
@@ -1 +1 @@
-7
+9

Modified: trunk/packages/srf/trunk/debian/control
===
--- trunk/packages/srf/trunk/debian/control 2013-09-12 09:21:51 UTC (rev 
14665)
+++ trunk/packages/srf/trunk/debian/control 2013-09-12 13:22:16 UTC (rev 
14666)
@@ -1,14 +1,19 @@
 Source: srf
+Maintainer: Debian Med Packaging Team 

+Uploaders: Charles Plessy ,
+   Andreas Tille 
 Section: science
 Priority: optional
-Maintainer: Debian Med Packaging Team 

-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy 
-Build-Depends: cdbs, quilt, debhelper (>= 7), autotools-dev, 
libcurl4-gnutls-dev, libstaden-read-dev
-Standards-Version: 3.8.3
+Build-Depends: cdbs,
+   quilt,
+   debhelper (>= 9),
+   autotools-dev,
+   libcurl4-gnutls-dev,
+   libstaden-read-dev
+Standards-Version: 3.9.4
+Vcs-Browser: 
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/srf/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/srf/trunk/
 Homepage: http://srf.sourceforge.net/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/srf/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/srf/trunk/
 
 Package: srf-doc
 Architecture: all
@@ -28,7 +33,8 @@
 Package: libsrf-dev
 Architecture: any
 Section: libdevel
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
 Description: C++ implementation of the SRF format for DNA sequence data
  SRF (sort for Sequence Read Format) is a generic format capable of storing
  data generated by any DNA sequencing technology. This library is an


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[med-svn] r14664 - trunk/packages/embassy-phylip/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 09:20:47 + (Thu, 12 Sep 2013)
New Revision: 14664

Modified:
   trunk/packages/embassy-phylip/trunk/debian/changelog
Log:
Upload to unstable


Modified: trunk/packages/embassy-phylip/trunk/debian/changelog
===
--- trunk/packages/embassy-phylip/trunk/debian/changelog2013-09-12 
08:59:12 UTC (rev 14663)
+++ trunk/packages/embassy-phylip/trunk/debian/changelog2013-09-12 
09:20:47 UTC (rev 14664)
@@ -1,4 +1,4 @@
-embassy-phylip (3.69.650-1) UNRELEASED; urgency=low
+embassy-phylip (3.69.650-1) unstable; urgency=low
 
   * New upstream version
   * debian/control:


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[med-svn] r14665 - trunk/packages/embassy-phylip/tags

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 09:21:51 + (Thu, 12 Sep 2013)
New Revision: 14665

Added:
   trunk/packages/embassy-phylip/tags/3.69.650-1/
Removed:
   trunk/packages/embassy-phylip/tags/3.68-1/
   trunk/packages/embassy-phylip/tags/3.69+20100721-1/
   trunk/packages/embassy-phylip/tags/3.69+20100721-2/
Log:
Tagged 3.69.650-1 (and removed historic tags)



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[med-svn] r14663 - trunk/packages/embassy-phylip/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 08:59:12 + (Thu, 12 Sep 2013)
New Revision: 14663

Modified:
   trunk/packages/embassy-phylip/trunk/debian/changelog
   trunk/packages/embassy-phylip/trunk/debian/control
Log:
 * New upstream version
 * debian/control:
- cme fix dpkg-control
- Bumped versioned depends from emboss-lib
- anonscm in VCS fields
- added XS-Autobuild: yes



Modified: trunk/packages/embassy-phylip/trunk/debian/changelog
===
--- trunk/packages/embassy-phylip/trunk/debian/changelog2013-09-12 
08:26:32 UTC (rev 14662)
+++ trunk/packages/embassy-phylip/trunk/debian/changelog2013-09-12 
08:59:12 UTC (rev 14663)
@@ -1,3 +1,14 @@
+embassy-phylip (3.69.650-1) UNRELEASED; urgency=low
+
+  * New upstream version
+  * debian/control:
+ - cme fix dpkg-control
+ - Bumped versioned depends from emboss-lib
+ - anonscm in VCS fields
+ - added XS-Autobuild: yes
+
+ -- Andreas Tille   Thu, 12 Sep 2013 10:32:23 +0200
+
 embassy-phylip (3.69+20110714-1) unstable; urgency=low
 
   * New upstream version

Modified: trunk/packages/embassy-phylip/trunk/debian/control
===
--- trunk/packages/embassy-phylip/trunk/debian/control  2013-09-12 08:26:32 UTC 
(rev 14662)
+++ trunk/packages/embassy-phylip/trunk/debian/control  2013-09-12 08:59:12 UTC 
(rev 14663)
@@ -1,27 +1,29 @@
 Source: embassy-phylip
+Maintainer: Debian Med Packaging Team 

+Uploaders: Charles Plessy ,
+   Andreas Tille 
 Section: non-free/science
 Priority: optional
-Maintainer: Debian Med Packaging Team 

-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy ,
- Andreas Tille 
-Build-Depends:
-   debhelper (>= 9),
-   autotools-dev,
-   libxaw7-dev,
-emboss-lib (>= 6.4.0-1~),
-emboss-lib (<< 6.4.1~),
-   libgd2-xpm-dev,
-   libmysqlclient-dev,
-libpq-dev
-Standards-Version: 3.9.3
+Build-Depends: debhelper (>= 9),
+   autotools-dev,
+   libxaw7-dev,
+   emboss-lib (>= 6.6.0-1~),
+   emboss-lib (<< 6.6.1~),
+   libgd2-xpm-dev,
+   libmysqlclient-dev,
+   libpq-dev
+Standards-Version: 3.9.4
+Vcs-Browser: 
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/embassy-phylip/trunk/
+Vcs-Svn: 
svn://anonscm.debian.org/debian-med/trunk/packages/embassy-phylip/trunk/
 Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#PHYLIPNEW
-Vcs-Browser: 
http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-phylip/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/embassy-phylip/trunk
+XS-Autobuild: yes
 
 Package: embassy-phylip
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.4.0-1~), 
emboss-lib (<< 6.4.1~)
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ emboss-lib (>= 6.4.0-1~),
+ emboss-lib (<< 6.4.1~)
 Description: EMBOSS conversions of the programs in the phylip package
  This package is the adaptation of the PHYLIP package in which its
  programs can operate with the biological sequence formats and databases
@@ -38,3 +40,4 @@
  .
  The EMBASSY PHYLIP programs all have the prefix "f" to distinguish them
  from the original programs and avoid namespace conflict.
+


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[med-svn] r14662 - trunk/packages/embassy-domsearch/tags

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 08:26:32 + (Thu, 12 Sep 2013)
New Revision: 14662

Added:
   trunk/packages/embassy-domsearch/tags/0.1.650-1/
Removed:
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-1/
Log:
Tagged 0.1.650-1



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[med-svn] r14661 - trunk/packages/embassy-domsearch/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 08:25:30 + (Thu, 12 Sep 2013)
New Revision: 14661

Modified:
   trunk/packages/embassy-domsearch/trunk/debian/changelog
Log:
Upload to unstable


Modified: trunk/packages/embassy-domsearch/trunk/debian/changelog
===
--- trunk/packages/embassy-domsearch/trunk/debian/changelog 2013-09-12 
08:02:28 UTC (rev 14660)
+++ trunk/packages/embassy-domsearch/trunk/debian/changelog 2013-09-12 
08:25:30 UTC (rev 14661)
@@ -1,4 +1,4 @@
-embassy-domsearch (1:0.1.650-1) UNRELEASED; urgency=low
+embassy-domsearch (1:0.1.650-1) unstable; urgency=low
 
   * New upstream version
   * debian/control:


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[med-svn] r14660 - trunk/packages/embassy-domsearch/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 08:02:28 + (Thu, 12 Sep 2013)
New Revision: 14660

Modified:
   trunk/packages/embassy-domsearch/trunk/debian/changelog
   trunk/packages/embassy-domsearch/trunk/debian/control
Log:
cme fix dpkg-control; Bumped versioned depends from emboss-lib; anonscm in VCS 
fields


Modified: trunk/packages/embassy-domsearch/trunk/debian/changelog
===
--- trunk/packages/embassy-domsearch/trunk/debian/changelog 2013-09-12 
08:00:13 UTC (rev 14659)
+++ trunk/packages/embassy-domsearch/trunk/debian/changelog 2013-09-12 
08:02:28 UTC (rev 14660)
@@ -1,6 +1,10 @@
 embassy-domsearch (1:0.1.650-1) UNRELEASED; urgency=low
 
   * New upstream version
+  * debian/control:
+ - cme fix dpkg-control
+ - Bumped versioned depends from emboss-lib
+ - anonscm in VCS fields
 
  -- Andreas Tille   Thu, 12 Sep 2013 10:03:31 +0200
 

Modified: trunk/packages/embassy-domsearch/trunk/debian/control
===
--- trunk/packages/embassy-domsearch/trunk/debian/control   2013-09-12 
08:00:13 UTC (rev 14659)
+++ trunk/packages/embassy-domsearch/trunk/debian/control   2013-09-12 
08:02:28 UTC (rev 14660)
@@ -1,26 +1,27 @@
 Source: embassy-domsearch
+Maintainer: Debian Med Packaging Team 

+Uploaders: Charles Plessy ,
+   Andreas Tille 
 Section: science
 Priority: optional
-Build-Depends:
-   debhelper (>= 9),
-   emboss-lib (>= 6.4.0-1~),
-   emboss-lib (<< 6.4.1~),
-   libx11-dev,
-   libgd2-xpm-dev,
-   libmysqlclient-dev,
-libpq-dev
-Maintainer: Debian Med Packaging Team 

-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy ,
- Andreas Tille 
-Vcs-Browser: 
http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domsearch/trunk/
-Vcs-Svn: 
svn://svn.debian.org/debian-med/trunk/packages/embassy-domsearch/trunk/
-Standards-Version: 3.9.3
+Build-Depends: debhelper (>= 9),
+   emboss-lib (>= 6.6.0-1~),
+   emboss-lib (<< 6.6.1~),
+   libx11-dev,
+   libgd2-xpm-dev,
+   libmysqlclient-dev,
+   libpq-dev
+Standards-Version: 3.9.4
+Vcs-Browser: 
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/embassy-domsearch/trunk/
+Vcs-Svn: 
svn://anonscm.debian.org/debian-med/trunk/packages/embassy-domsearch/trunk/
 Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
 
 Package: embassy-domsearch
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.4.0-1~), 
emboss-lib (<< 6.4.1~)
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ emboss-lib (>= 6.6.0-1~),
+ emboss-lib (<< 6.6.1~)
 Recommends: emboss
 Suggests: embassy
 Description: Extra EMBOSS commands to search for protein domains
@@ -33,3 +34,4 @@
  (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove
  ambiguous classified sequences from DHF files) and seqwords (Generates DHF
  files from keyword search of UniProt).
+


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[med-svn] r14659 - trunk/packages/embassy-domsearch/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 08:00:13 + (Thu, 12 Sep 2013)
New Revision: 14659

Modified:
   trunk/packages/embassy-domsearch/trunk/debian/changelog
Log:
New upstream version


Modified: trunk/packages/embassy-domsearch/trunk/debian/changelog
===
--- trunk/packages/embassy-domsearch/trunk/debian/changelog 2013-09-12 
07:57:50 UTC (rev 14658)
+++ trunk/packages/embassy-domsearch/trunk/debian/changelog 2013-09-12 
08:00:13 UTC (rev 14659)
@@ -1,3 +1,9 @@
+embassy-domsearch (1:0.1.650-1) UNRELEASED; urgency=low
+
+  * New upstream version
+
+ -- Andreas Tille   Thu, 12 Sep 2013 10:03:31 +0200
+
 embassy-domsearch (1:0.1.0+20110714-1) unstable; urgency=low
 
   * New upstream version


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[med-svn] r14658 - trunk/packages/embassy-domalign/tags

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 07:57:50 + (Thu, 12 Sep 2013)
New Revision: 14658

Added:
   trunk/packages/embassy-domalign/tags/0.1.650-1/
Removed:
   trunk/packages/embassy-domalign/tags/0.1.0+20100721-1/
   trunk/packages/embassy-domalign/tags/0.1.0+20100721-2/
Log:
Tagged 0.1.650-1 (and removed historic tags)



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[med-svn] r14657 - trunk/packages/embassy-domalign/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 07:56:14 + (Thu, 12 Sep 2013)
New Revision: 14657

Modified:
   trunk/packages/embassy-domalign/trunk/debian/changelog
Log:
UPload to unstable


Modified: trunk/packages/embassy-domalign/trunk/debian/changelog
===
--- trunk/packages/embassy-domalign/trunk/debian/changelog  2013-09-12 
07:51:06 UTC (rev 14656)
+++ trunk/packages/embassy-domalign/trunk/debian/changelog  2013-09-12 
07:56:14 UTC (rev 14657)
@@ -1,4 +1,4 @@
-embassy-domalign (0.1.650-1) UNRELEASED; urgency=low
+embassy-domalign (0.1.650-1) unstable; urgency=low
 
   * New upstream version
   * debian/control:


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[med-svn] r14656 - trunk/packages/embassy-domalign/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 07:51:06 + (Thu, 12 Sep 2013)
New Revision: 14656

Modified:
   trunk/packages/embassy-domalign/trunk/debian/changelog
   trunk/packages/embassy-domalign/trunk/debian/control
Log:
cme fix dpkg-control; bumped emboss-lib version; anonscm


Modified: trunk/packages/embassy-domalign/trunk/debian/changelog
===
--- trunk/packages/embassy-domalign/trunk/debian/changelog  2013-09-12 
07:47:56 UTC (rev 14655)
+++ trunk/packages/embassy-domalign/trunk/debian/changelog  2013-09-12 
07:51:06 UTC (rev 14656)
@@ -1,6 +1,10 @@
 embassy-domalign (0.1.650-1) UNRELEASED; urgency=low
 
   * New upstream version
+  * debian/control:
+ - cme fix dpkg-control
+ - Bumped versioned depends from emboss-lib
+ - anonscm in VCS fields
 
  -- Andreas Tille   Thu, 12 Sep 2013 09:51:35 +0200
 

Modified: trunk/packages/embassy-domalign/trunk/debian/control
===
--- trunk/packages/embassy-domalign/trunk/debian/control2013-09-12 
07:47:56 UTC (rev 14655)
+++ trunk/packages/embassy-domalign/trunk/debian/control2013-09-12 
07:51:06 UTC (rev 14656)
@@ -1,28 +1,27 @@
 Source: embassy-domalign
+Maintainer: Debian Med Packaging Team 

+Uploaders: Charles Plessy ,
+   Andreas Tille 
 Section: science
 Priority: optional
-Build-Depends:
-   debhelper (>= 9),
-   emboss-lib (>= 6.4.0-1~),
-   emboss-lib (<< 6.4.1~),
-   libx11-dev,
-   libgd2-xpm-dev,
-   libmysqlclient-dev,
-   libpq-dev
-#  automake
-# automake is necessary as long as src/Makefile.am is patched.
-Maintainer: Debian Med Packaging Team 

-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy ,
- Andreas Tille 
-Vcs-Browser: 
http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domalign/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/embassy-domalign/trunk/
-Standards-Version: 3.9.3
+Build-Depends: debhelper (>= 9),
+   emboss-lib (>= 6.6.0-1~),
+   emboss-lib (<< 6.6.1~),
+   libx11-dev,
+   libgd2-xpm-dev,
+   libmysqlclient-dev,
+   libpq-dev
+Standards-Version: 3.9.4
+Vcs-Browser: 
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/embassy-domalign/trunk/
+Vcs-Svn: 
svn://anonscm.debian.org/debian-med/trunk/packages/embassy-domalign/trunk/
 Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN
 
 Package: embassy-domalign
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.4.0-1~), 
emboss-lib (<< 6.4.1~)
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ emboss-lib (>= 6.6.0-1~),
+ emboss-lib (<< 6.6.1~)
 Recommends: emboss
 Suggests: embassy
 Description: Extra EMBOSS commands for protein domain alignment
@@ -35,3 +34,4 @@
  alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file
  to identify representative structures) and seqalign (extend alignments (DAF
  file) with sequences (DHF file)).
+


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[med-svn] r14655 - trunk/packages/embassy-domalign/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 07:47:56 + (Thu, 12 Sep 2013)
New Revision: 14655

Modified:
   trunk/packages/embassy-domalign/trunk/debian/changelog
Log:
New upstream version


Modified: trunk/packages/embassy-domalign/trunk/debian/changelog
===
--- trunk/packages/embassy-domalign/trunk/debian/changelog  2013-09-12 
07:45:48 UTC (rev 14654)
+++ trunk/packages/embassy-domalign/trunk/debian/changelog  2013-09-12 
07:47:56 UTC (rev 14655)
@@ -1,3 +1,9 @@
+embassy-domalign (0.1.650-1) UNRELEASED; urgency=low
+
+  * New upstream version
+
+ -- Andreas Tille   Thu, 12 Sep 2013 09:51:35 +0200
+
 embassy-domalign (0.1.0+20110714-1) unstable; urgency=low
 
   * New upstream version (upstream has applied quilt patch)


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[med-svn] r14654 - trunk/packages/embassy-domainatrix/tags

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 07:45:48 + (Thu, 12 Sep 2013)
New Revision: 14654

Added:
   trunk/packages/embassy-domainatrix/tags/0.1.650-1/
Removed:
   trunk/packages/embassy-domainatrix/tags/0.1.0+20100721-1/
   trunk/packages/embassy-domainatrix/tags/0.1.0+20100721-2/
Log:
Tagged 0.1.650-1 (and removed historic tags)



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[med-svn] r14653 - trunk/packages/embassy-domainatrix/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 07:44:24 + (Thu, 12 Sep 2013)
New Revision: 14653

Modified:
   trunk/packages/embassy-domainatrix/trunk/debian/changelog
Log:
Upload to unstable


Modified: trunk/packages/embassy-domainatrix/trunk/debian/changelog
===
--- trunk/packages/embassy-domainatrix/trunk/debian/changelog   2013-09-12 
07:40:16 UTC (rev 14652)
+++ trunk/packages/embassy-domainatrix/trunk/debian/changelog   2013-09-12 
07:44:24 UTC (rev 14653)
@@ -1,4 +1,4 @@
-embassy-domainatrix (0.1.650-1) UNRELEASED; urgency=low
+embassy-domainatrix (0.1.650-1) unstable; urgency=low
 
   * New upstream version
   * debian/control:


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[med-svn] r14652 - trunk/packages/embassy-domainatrix/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 07:40:16 + (Thu, 12 Sep 2013)
New Revision: 14652

Modified:
   trunk/packages/embassy-domainatrix/trunk/debian/changelog
   trunk/packages/embassy-domainatrix/trunk/debian/control
Log:
anonscm in VCS fields


Modified: trunk/packages/embassy-domainatrix/trunk/debian/changelog
===
--- trunk/packages/embassy-domainatrix/trunk/debian/changelog   2013-09-12 
07:38:37 UTC (rev 14651)
+++ trunk/packages/embassy-domainatrix/trunk/debian/changelog   2013-09-12 
07:40:16 UTC (rev 14652)
@@ -4,6 +4,7 @@
   * debian/control:
  - cme fix dpkg-control
  - Bumped versioned depends from emboss-lib
+ - anonscm in VCS fields
 
  -- Andreas Tille   Thu, 12 Sep 2013 09:38:23 +0200
 

Modified: trunk/packages/embassy-domainatrix/trunk/debian/control
===
--- trunk/packages/embassy-domainatrix/trunk/debian/control 2013-09-12 
07:38:37 UTC (rev 14651)
+++ trunk/packages/embassy-domainatrix/trunk/debian/control 2013-09-12 
07:40:16 UTC (rev 14652)
@@ -12,8 +12,8 @@
libmysqlclient-dev,
libpq-dev
 Standards-Version: 3.9.4
-Vcs-Browser: 
http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domainatrix/trunk/
-Vcs-Svn: 
svn://svn.debian.org/debian-med/trunk/packages/embassy-domainatrix/trunk/
+Vcs-Browser: 
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/embassy-domainatrix/trunk/
+Vcs-Svn: 
svn://anonscm.debian.org/debian-med/trunk/packages/embassy-domainatrix/trunk/
 Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMAINATRIX
 
 Package: embassy-domainatrix


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[med-svn] r14651 - trunk/packages/embassy-domainatrix/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 07:38:37 + (Thu, 12 Sep 2013)
New Revision: 14651

Modified:
   trunk/packages/embassy-domainatrix/trunk/debian/changelog
   trunk/packages/embassy-domainatrix/trunk/debian/control
Log:
cme fix dpkg-control; Bumped versioned depends from emboss-lib


Modified: trunk/packages/embassy-domainatrix/trunk/debian/changelog
===
--- trunk/packages/embassy-domainatrix/trunk/debian/changelog   2013-09-12 
07:35:16 UTC (rev 14650)
+++ trunk/packages/embassy-domainatrix/trunk/debian/changelog   2013-09-12 
07:38:37 UTC (rev 14651)
@@ -1,6 +1,9 @@
 embassy-domainatrix (0.1.650-1) UNRELEASED; urgency=low
 
   * New upstream version
+  * debian/control:
+ - cme fix dpkg-control
+ - Bumped versioned depends from emboss-lib
 
  -- Andreas Tille   Thu, 12 Sep 2013 09:38:23 +0200
 

Modified: trunk/packages/embassy-domainatrix/trunk/debian/control
===
--- trunk/packages/embassy-domainatrix/trunk/debian/control 2013-09-12 
07:35:16 UTC (rev 14650)
+++ trunk/packages/embassy-domainatrix/trunk/debian/control 2013-09-12 
07:38:37 UTC (rev 14651)
@@ -1,25 +1,27 @@
 Source: embassy-domainatrix
+Maintainer: Debian Med Packaging Team 

+Uploaders: Charles Plessy ,
+   Andreas Tille 
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 9),
-emboss-lib (>= 6.4.0-1~),
-emboss-lib (<< 6.4.1~),
-   libx11-dev,
-   libgd2-xpm-dev,
-   libmysqlclient-dev,
-   libpq-dev
-Maintainer: Debian Med Packaging Team 

-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy ,
- Andreas Tille 
+   emboss-lib (>= 6.6.0-1~),
+   emboss-lib (<< 6.6.1~),
+   libx11-dev,
+   libgd2-xpm-dev,
+   libmysqlclient-dev,
+   libpq-dev
+Standards-Version: 3.9.4
 Vcs-Browser: 
http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domainatrix/trunk/
 Vcs-Svn: 
svn://svn.debian.org/debian-med/trunk/packages/embassy-domainatrix/trunk/
-Standards-Version: 3.9.3
 Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMAINATRIX
 
 Package: embassy-domainatrix
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.4.0-1~), 
emboss-lib (<< 6.4.1~)
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ emboss-lib (>= 6.6.0-1~),
+ emboss-lib (<< 6.6.1~)
 Recommends: emboss
 Suggests: embassy
 Description: Extra EMBOSS commands to handle domain classification file
@@ -33,3 +35,4 @@
  (adds sequence records to a DCF file), domainsse (adds secondary structure
  records to a DCF file), scopparse (generates DCF file from raw SCOP files) and
  ssematch (searches a DCF file for secondary structure matches).
+


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[med-svn] r14650 - trunk/packages/embassy-domainatrix/trunk/debian

2013-09-12 Thread Andreas Tille 
Author: tille
Date: 2013-09-12 07:35:16 + (Thu, 12 Sep 2013)
New Revision: 14650

Modified:
   trunk/packages/embassy-domainatrix/trunk/debian/changelog
Log:
New upstream version


Modified: trunk/packages/embassy-domainatrix/trunk/debian/changelog
===
--- trunk/packages/embassy-domainatrix/trunk/debian/changelog   2013-09-12 
06:15:32 UTC (rev 14649)
+++ trunk/packages/embassy-domainatrix/trunk/debian/changelog   2013-09-12 
07:35:16 UTC (rev 14650)
@@ -1,3 +1,9 @@
+embassy-domainatrix (0.1.650-1) UNRELEASED; urgency=low
+
+  * New upstream version
+
+ -- Andreas Tille   Thu, 12 Sep 2013 09:38:23 +0200
+
 embassy-domainatrix (0.1.0+20110714-1) unstable; urgency=low
 
   * New upstream version


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