date:20130917

[med-svn] r14731 - in trunk/packages/treeview/trunk/debian: . patches

2013-09-17 Thread Thorsten Alteholz

Author: alteholz
Date: 2013-09-17 17:46:06 + (Tue, 17 Sep 2013)
New Revision: 14731

Modified:
   trunk/packages/treeview/trunk/debian/changelog
   trunk/packages/treeview/trunk/debian/patches/classpath.patch
Log:
new release

Modified: trunk/packages/treeview/trunk/debian/changelog
===
--- trunk/packages/treeview/trunk/debian/changelog  2013-09-17 17:32:22 UTC 
(rev 14730)
+++ trunk/packages/treeview/trunk/debian/changelog  2013-09-17 17:46:06 UTC 
(rev 14731)
@@ -1,3 +1,9 @@
+treeview (1.1.6.4+dfsg-1) unstable; urgency=low
+
+  * New upstream release.
+
+ -- Thorsten Alteholz   Tue, 17 Sep 2013 18:00:00 +0200
+
 treeview (1.1.6.3+dfsg-1) unstable; urgency=low
 
   * New upstream release.

Modified: trunk/packages/treeview/trunk/debian/patches/classpath.patch
===
--- trunk/packages/treeview/trunk/debian/patches/classpath.patch
2013-09-17 17:32:22 UTC (rev 14730)
+++ trunk/packages/treeview/trunk/debian/patches/classpath.patch
2013-09-17 17:46:06 UTC (rev 14731)
@@ -1,9 +1,9 @@
 Description: do not use internal lib
 Author: Thorsten Alteholz 
-Index: treeview_1.1.6.2+dfsg.orig/build.xml
+Index: treeview_1.1.6.4+dfsg.orig/build.xml
 ===
 treeview_1.1.6.2+dfsg.orig.orig/build.xml  2013-04-26 10:24:51.0 
+0200
-+++ treeview_1.1.6.2+dfsg.orig/build.xml   2013-04-26 10:45:16.0 
+0200
+--- treeview_1.1.6.4+dfsg.orig.orig/build.xml  2013-09-17 12:56:26.0 
+0200
 treeview_1.1.6.4+dfsg.orig/build.xml   2013-09-17 12:59:03.0 
+0200
 @@ -83,6 +83,9 @@


@@ -41,29 +41,56 @@

  
  
-@@ -342,6 +345,7 @@
+@@ -337,51 +340,11 @@
+   
+   
+   
+-  
+ 
  
  
  
-+
+-  
+-  
+-  
+-  
+-
+-  
+-  
+-
+-
++
  
  
  


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[med-svn] [freecontact] branch master updated (e34a020 -> 68d1782)

2013-09-17 Thread Laszlo Kajan

This is an automated email from the git hooks/post-receive script.

lkajan pushed a change to branch master
in repository freecontact.

  from  e34a020   1.0.17-1 released
   new  68d1782   addressing bugs concerning SSE2 instructions, and =item 
perlpod usage

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore  |2 +-
 debian/control  |2 +-
 lib/freecontact.cpp |   30 +++---
 lib/freecontact.h   |   19 +--
 src/freecontact.cpp |8 
 5 files changed, 34 insertions(+), 27 deletions(-)

-- 
Alioth's /git/debian-med/git-commit-notice on 
/srv/git.debian.org/git/debian-med/freecontact.git

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[med-svn] r14730 - in trunk/packages/mira/trunk/debian: . patches

2013-09-17 Thread Thorsten Alteholz

Author: alteholz
Date: 2013-09-17 17:32:22 + (Tue, 17 Sep 2013)
New Revision: 14730

Added:
   trunk/packages/mira/trunk/debian/patches/make.patch
   trunk/packages/mira/trunk/debian/patches/spelling.patch
Modified:
   trunk/packages/mira/trunk/debian/changelog
   trunk/packages/mira/trunk/debian/mira-assembler.lintian-overrides
   trunk/packages/mira/trunk/debian/patches/series
Log:
progress for rc1

Modified: trunk/packages/mira/trunk/debian/changelog
===
--- trunk/packages/mira/trunk/debian/changelog  2013-09-17 15:20:29 UTC (rev 
14729)
+++ trunk/packages/mira/trunk/debian/changelog  2013-09-17 17:32:22 UTC (rev 
14730)
@@ -1,3 +1,10 @@
+mira (4.0~rc1-1) UNRELEASED; urgency=low
+
+  * TODO wait for rc2 and boost transition!
+  * New upstream version 
+
+ -- Thorsten Alteholz   Tue, 17 Sep 2013 18:00:00 +0200
+
 mira (3.9.18-1) unstable; urgency=low
 
   * New upstream version (most patches applied by upstream)

Modified: trunk/packages/mira/trunk/debian/mira-assembler.lintian-overrides
===
--- trunk/packages/mira/trunk/debian/mira-assembler.lintian-overrides   
2013-09-17 15:20:29 UTC (rev 14729)
+++ trunk/packages/mira/trunk/debian/mira-assembler.lintian-overrides   
2013-09-17 17:32:22 UTC (rev 14730)
@@ -1,4 +1,2 @@
 # according to www.dict.cc transfering is American English spelling
 mira-assembler: spelling-error-in-binary usr/bin/mira Transfering Transferring
-mira-assembler: spelling-error-in-binary usr/bin/convert_project Transfering 
Transferring
-

Added: trunk/packages/mira/trunk/debian/patches/make.patch
===
--- trunk/packages/mira/trunk/debian/patches/make.patch 
(rev 0)
+++ trunk/packages/mira/trunk/debian/patches/make.patch 2013-09-17 17:32:22 UTC 
(rev 14730)
@@ -0,0 +1,26 @@
+Index: mira-4.0rc1/src/progs/Makefile.am
+===
+--- mira-4.0rc1.orig/src/progs/Makefile.am 2013-08-17 16:11:50.0 
+0200
 mira-4.0rc1/src/progs/Makefile.am  2013-09-17 14:41:44.0 +0200
+@@ -49,7 +49,7 @@
+   rm -f miramem$(EXEEXT) && \
+   $(LN_S) mira$(EXEEXT) miramem$(EXEEXT) && \
+   rm -f mirabait$(EXEEXT) && \
+-  $(LN_S) mira$(EXEEXT) mirabait$(EXEEXT)\
++  $(LN_S) mira$(EXEEXT) mirabait$(EXEEXT) && \
+   rm -f miraconvert$(EXEEXT) && \
+   $(LN_S) mira$(EXEEXT) miraconvert$(EXEEXT)
+ 
+Index: mira-4.0rc1/src/progs/Makefile.in
+===
+--- mira-4.0rc1.orig/src/progs/Makefile.in 2013-08-17 16:13:05.0 
+0200
 mira-4.0rc1/src/progs/Makefile.in  2013-09-17 15:06:06.0 +0200
+@@ -609,7 +609,7 @@
+   rm -f miramem$(EXEEXT) && \
+   $(LN_S) mira$(EXEEXT) miramem$(EXEEXT) && \
+   rm -f mirabait$(EXEEXT) && \
+-  $(LN_S) mira$(EXEEXT) mirabait$(EXEEXT)\
++  $(LN_S) mira$(EXEEXT) mirabait$(EXEEXT) && \
+   rm -f miraconvert$(EXEEXT) && \
+   $(LN_S) mira$(EXEEXT) miraconvert$(EXEEXT)
+ 

Modified: trunk/packages/mira/trunk/debian/patches/series
===
--- trunk/packages/mira/trunk/debian/patches/series 2013-09-17 15:20:29 UTC 
(rev 14729)
+++ trunk/packages/mira/trunk/debian/patches/series 2013-09-17 17:32:22 UTC 
(rev 14730)
@@ -1 +1,3 @@
-boost-minimal.patch
+#boost-minimal.patch
+make.patch
+spelling.patch

Added: trunk/packages/mira/trunk/debian/patches/spelling.patch
===
--- trunk/packages/mira/trunk/debian/patches/spelling.patch 
(rev 0)
+++ trunk/packages/mira/trunk/debian/patches/spelling.patch 2013-09-17 
17:32:22 UTC (rev 14730)
@@ -0,0 +1,26 @@
+Index: mira-4.0rc1/src/io/gap4_ft_so_map.xxd
+===
+--- mira-4.0rc1.orig/src/io/gap4_ft_so_map.xxd 2013-08-17 16:11:50.0 
+0200
 mira-4.0rc1/src/io/gap4_ft_so_map.xxd  2013-09-17 15:43:44.0 
+0200
+@@ -37,7 +37,7 @@
+ Fcon  conflictsequence_conflict   SO:0001085  independent 
determinations of the "same" sequence differ at this site or region; Or 
/compare=[accession-number.sequence-version]Different sources report 
differing sequences. [EBIBS:GAR, UniProt:curation_manual]
+ Fenh  enhancerenhancerSO:165  a cis-acting sequence 
that increases the utilization of (some)  eukaryotic promoters, and can 
function in either orientation and in any location (upstream or downstream) 
relative to the promoter; A cis-acting sequence that increases the 
utilization of (some) eukaryotic promoters, and can function in either 
orientation and in any location (upstream or downstream) relative to the 
promoter.
+ Fexn  exonexonSO:147

[med-svn] [freecontact] 01/01: addressing bugs concerning SSE2 instructions, and =item perlpod usage

2013-09-17 Thread Laszlo Kajan

This is an automated email from the git hooks/post-receive script.

lkajan pushed a commit to branch master
in repository freecontact.

commit 68d17825c2c16ceecd0500d3ed7e05e5eb5cc1a8
Author: Laszlo Kajan 
Date:   Tue Sep 17 20:09:06 2013 +0200

addressing bugs concerning SSE2 instructions, and =item perlpod usage
---
 .gitignore  |2 +-
 debian/control  |2 +-
 lib/freecontact.cpp |   30 +++---
 lib/freecontact.h   |   19 +--
 src/freecontact.cpp |8 
 5 files changed, 34 insertions(+), 27 deletions(-)

diff --git a/.gitignore b/.gitignore
index d63570b..71d1ec0 100644
--- a/.gitignore
+++ b/.gitignore
@@ -23,7 +23,7 @@ debian/*.substvars
 debian/tmp/
 depcomp
 doxygen-doc/
-.gitignore.swp
+*.swp
 help-dummy.o
 install-sh
 lib/config.h
diff --git a/debian/control b/debian/control
index 912caa9..f9a92a5 100644
--- a/debian/control
+++ b/debian/control
@@ -3,7 +3,7 @@ Section: science
 Priority: extra
 Maintainer: Debian Med Packaging Team 

 Uploaders: Laszlo Kajan 
-Build-Depends: debhelper (>= 9.0.0), autotools-dev, bash-completion, gfortran, 
libblas-dev | libblas-3.so, libboost-dev, libboost-program-options-dev, 
liblapack-dev | liblapack-3.so, libxerces-c-dev, perl, xsdcxx (>= 3.3)
+Build-Depends: debhelper (>= 9.0.0), automake, bash-completion, gfortran, 
libblas-dev | libblas-3.so, libboost-dev, libboost-program-options-dev, 
liblapack-dev | liblapack-3.so, libxerces-c-dev, perl, xsdcxx (>= 3.3)
 Build-Depends-Indep: doxygen
 Standards-Version: 3.9.4
 Homepage: http://rostlab.org/
diff --git a/lib/freecontact.cpp b/lib/freecontact.cpp
index 077ab6a..4fb2795 100644
--- a/lib/freecontact.cpp
+++ b/lib/freecontact.cpp
@@ -14,9 +14,8 @@
 *   You should have received a copy of the GNU General Public License
 *   along with this program.  If not, see .
 */
-#include "config.h"
+#include "freecontact.h"
 
-#include 
 #ifdef HAVE_OPENMP
 #include 
 #endif
@@ -26,11 +25,9 @@
 //#include  // auto_ptr, unique_ptr
 #include 
 #include 
-#include 
 #include 
 #include 
 #include 
-#include "freecontact.h"
 
 // lkajan: EVfold-mfDCA is calculate_evolutionary_constraints.m
 
@@ -187,6 +184,11 @@ static inline vector
 static inline uint32_t
 _cache_holds_nseq(uint16_t __seqsize);
 
+#ifndef __SSE2__
+static inline __m128i _mm_setzero_si128(){ __m128i m; long long *mp = (long 
long *)&m; mp[1] = mp[0] = 0; return m; }
+#endif
+
+
 class _glasso_timer {
 timer_t _timerid;
 
@@ -255,7 +257,7 @@ voidpredictor::get_seq_weights(
 
 // lkajan: allow for other vectorizations as well
 #define CAN_VECW 0
-#ifdef HAVE_SSE2
+#ifdef __SSE2__
 #undef CAN_VECW
 #define CAN_VECW 1
 #endif
@@ -299,7 +301,7 @@ voidpredictor::get_seq_weights(
 }
 }
 }
-#ifdef HAVE_SSE2
+#ifdef __SSE2__
 else
 {
 // lkajan: Dynamically set chunk size according to (L1) cache size 
(cat 
/sys/devices/system/cpu/cpu0/cache/index*/{coherency_line_size,level,size,type}).
@@ -395,7 +397,7 @@ voidpredictor::get_seq_weights(
 }
 #else // should never happen unless bug
 else throw std::runtime_error(bo::str(bo::format("ooops, there is a bug in 
%s around %s:%d") % PACKAGE % __FILE__ % __LINE__ ));
-#endif // HAVE_SSE2
+#endif // __SSE2__
 
 __wtot = 0; // total weight of all aligments, EVfold-mfDCA::Meff
 __aliw = freq_vec_t(__ali.seqcnt); // alignment weight array, 
EVfold-mfDCA::W
@@ -986,6 +988,20 @@ predictor::cont_res_t
 }
 
 
+ali_t&  ali_t::push(const std::vector& __al) throw 
(alilen_error)
+{
+if( __al.size() != alilen ) throw 
alilen_error(bo::str(bo::format("alignment length mismatch, expected %d, got 
%d") % alilen % __al.size() ));
+resize( ++seqcnt*alilen16, _mm_setzero_si128() );
+
+uint8_t *alptr = reinterpret_cast(data()) + (seqcnt-1) * 
alilenpad;
+memcpy(alptr, __al.data(), __al.size());
+
+if( capacity() == size() )
+reserve( size() + 1024*alilen16 );
+return *this;
+}
+
+
 /// Calculate raw contact scores using given function and collect 
row/column/overall mean for APC calculation.
 /** \param [out] __raw_ctscore
  *  \param [out] __apc_bg
diff --git a/lib/freecontact.h b/lib/freecontact.h
index 38b340c..0608213 100644
--- a/lib/freecontact.h
+++ b/lib/freecontact.h
@@ -17,6 +17,8 @@
 #ifndef LIBFREECONTACT_H
 #define LIBFREECONTACT_H
 
+#include "config.h"
+
 #include 
 #include 
 #include 
@@ -24,7 +26,9 @@
 #include 
 #include 
 #include 
+#ifdef HAVE_X86INTRIN_H
 #include 
+#endif // HAVE_X86INTRIN_H
 
 #define LIBFREEC_API __attribute__ ((visibility ("default")))
 #define LIBFREEC_LOCAL __attribute__ ((visibility ("hidden")))
@@ -61,10 +65,8 @@ class LIBFREEC_API icme_timeout_error : public 
std::runtime_error {
 icme_timeout_error(const std::string& __arg) : 
std::runtime_error(__arg){}
 };

[med-svn] r14729 - in trunk/packages/dicom3tools/tags: . 1.00~20130914-1/debian

2013-09-17 Thread Mathieu Malaterre

Author: malat
Date: 2013-09-17 15:20:29 + (Tue, 17 Sep 2013)
New Revision: 14729

Added:
   trunk/packages/dicom3tools/tags/1.00~20130914-1/
Modified:
   trunk/packages/dicom3tools/tags/1.00~20130914-1/debian/changelog
Log:
[svn-buildpackage] Tagging dicom3tools 1.00~20130914-1

Modified: trunk/packages/dicom3tools/tags/1.00~20130914-1/debian/changelog
===
--- trunk/packages/dicom3tools/trunk/debian/changelog   2013-09-17 14:18:50 UTC 
(rev 14728)
+++ trunk/packages/dicom3tools/tags/1.00~20130914-1/debian/changelog
2013-09-17 15:20:29 UTC (rev 14729)
@@ -1,3 +1,10 @@
+dicom3tools (1.00~20130914-1) unstable; urgency=low
+
+  * New upstream
+  * Add recent CPs corrections
+
+ -- Mathieu Malaterre   Tue, 17 Sep 2013 17:04:54 +0200
+
 dicom3tools (1.00~20130623-2) unstable; urgency=low
 
   * Add dcunrgb (+Depends: netpbm)


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[med-svn] r14727 - trunk/packages/mgltools/pmv/trunk/debian/patches

2013-09-17 Thread Steffen Möller

Author: moeller
Date: 2013-09-17 13:58:16 + (Tue, 17 Sep 2013)
New Revision: 14727

Removed:
   
trunk/packages/mgltools/pmv/trunk/debian/patches/indentiationStylesCommands.patch
Modified:
   trunk/packages/mgltools/pmv/trunk/debian/patches/series
Log:
Upstream adopted the identiation patch.


Deleted: 
trunk/packages/mgltools/pmv/trunk/debian/patches/indentiationStylesCommands.patch
===
--- 
trunk/packages/mgltools/pmv/trunk/debian/patches/indentiationStylesCommands.patch
   2013-09-17 11:29:59 UTC (rev 14726)
+++ 
trunk/packages/mgltools/pmv/trunk/debian/patches/indentiationStylesCommands.patch
   2013-09-17 13:58:16 UTC (rev 14727)
@@ -1,13 +0,0 @@
-Index: Pmv-1.5.6~rc2+cvs.20111222/Pmv/stylesCommands.py
-===
 Pmv-1.5.6~rc2+cvs.20111222.orig/Pmv/stylesCommands.py  2011-10-01 
01:36:21.0 +0200
-+++ Pmv-1.5.6~rc2+cvs.20111222/Pmv/stylesCommands.py   2011-12-23 
21:57:47.0 +0100
-@@ -51,7 +51,7 @@
- ## self.vf.undo.addEntry((undoCmd), (name))
- 
- 
-- def setupUndo(self, name):
-+def setupUndo(self, name):
- oldRendering = getRendering(self.vf.GUI.VIEWER)
- self.undoRenderingStack.append(oldRendering)
- self.vf.NEWundo.addUndoCall( ([(self.undo, (),{})], name))

Modified: trunk/packages/mgltools/pmv/trunk/debian/patches/series
===
--- trunk/packages/mgltools/pmv/trunk/debian/patches/series 2013-09-17 
11:29:59 UTC (rev 14726)
+++ trunk/packages/mgltools/pmv/trunk/debian/patches/series 2013-09-17 
13:58:16 UTC (rev 14727)
@@ -6,6 +6,3 @@
 
 #blenderPmvClientGUI.patch
 syntax_fixes.patch
-
-#added by upstream
-indentiationStylesCommands.patch


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[med-svn] r14728 - trunk/packages/mgltools

2013-09-17 Thread Steffen Möller

Author: moeller
Date: 2013-09-17 14:18:50 + (Tue, 17 Sep 2013)
New Revision: 14728

Modified:
   trunk/packages/mgltools/BUILD
Log:
Tiny 'line width' helping patches

Modified: trunk/packages/mgltools/BUILD
===
--- trunk/packages/mgltools/BUILD   2013-09-17 13:58:16 UTC (rev 14727)
+++ trunk/packages/mgltools/BUILD   2013-09-17 14:18:50 UTC (rev 14728)
@@ -40,6 +40,10 @@
 
http://mgltools.scripps.edu/downloads/nightly/documentation/how-to/access-to-cvs
 or do what has worked for me the last time around:
 
+  # cvs is no longer fashionable, you possibly may not have it installed
+  if [ ! -x /usr/bin/cvs ]; then
+ sudo apt-get install cvs
+  fi
   cvs -d:pserver:anonym...@mgl1.scripps.edu:/opt/cvs login
 
 just give an empty password and continue with the download of some sort of a
@@ -82,7 +86,7 @@
   # directories.
   if [ -d mgltools-cvs ]; then cd mgltools-cvs; fi
   PREVDIST=DIST
-  VERSIONNAME=1.5.6~rc2+cvs.`date +"%Y%m%d" | tr -d '\n'`
+  VERSIONNAME=1.5.6~rc3+cvs.`date +"%Y%m%d" | tr -d '\n'`
   NEWDIST=-$VERSIONNAME
   TARDIR=../tarballs
   if [ -d "$TARDIR" ]; then
@@ -110,7 +114,7 @@
 
 The removal of the CVS directories is slightly unfortunate since for
 upstream these are thought to ensure a closer communication with their
-user base. Well, where is the autodock github project?
+user base. Well, where are the autodock and MGLTools github projects?
 
 The tarballs should be made accessible for svn-buildpackage to be
 found. The file .svn/deb-layout may be used to specify that location
@@ -164,9 +168,10 @@
 
 Preparing for some packages needed to fulfil runtime dependencies
 
+  sudo apt-get update
   sudo apt-get install python-zsi qhull-bin libqhull5 python-pmw python-tk \
blt python-all freeglut3-dev python-all-dev \
-  libglu1-mesa-dev tk-dev swig python-simpy
+  libglu1-mesa-dev tk-dev swig python-simpy python-all
 
 Now, there is a build-order to get all the packages built and installed
 without broken dependencies. The installation is not required for the
@@ -176,14 +181,16 @@
 
   d=$(pwd)
   if [ -d "$d/build-area" ]; then 
-   echo "Sleeping 5 seconds, then deleting previous builds. You were 
warned."
+   echo -n "Sleeping 5 seconds to grant you some time, "
+   echo"then deleting previous builds. You have been warned."
sleep 5
rm -rf "$d/build-area"
   fi
   mkdir -p "$d/build-area" || echo "Could not create $d/build-area."
   
   for p in  \
-support symserv pybabel pyglf volume utpackages bhtree sff mglutil 
geomutils \
+support symserv pybabel pyglf volume utpackages bhtree sff mglutil \
+geomutils \
 gle opengltk dejavu molkit viewerframework pyautodock networkeditor \
 vision scenario2 pmv autodocktools visionlibraries webservices cadd \
   ; do
@@ -191,7 +198,9 @@
  echo "   $p"
  echo " --"
 
- if [ -d "$d" ]; then cd "$d"; else echo "Cannot access root dir '$d'"; 
break; fi
+ if [ -d "$d" ]; then cd "$d"; else echo "Cannot access root dir '$d'";
+break;
+ fi
  prefix="mgltools-"
  if [ "autodocktools" = "$p" ]; then prefix=""; fi
  if [ ! -d "$d/$p/trunk/debian" ]; then echo "No debian folder for '$p'"; 
break; fi
@@ -201,6 +210,7 @@
echo "Files like ${prefix}${p}_${VERSIONNAME}*.deb not found in 
$d/build-area --> building it"
  fi
  cd "$d/$p/trunk"
+ if [ ! -d .svn ]; then mkdir .svn; fi
  if [ ! -r ".svn/deb-layout" ]; then
  echo "origDir=$d/tarballs" > .svn/deb-layout
  echo "buildArea=$d/build-area" >> .svn/deb-layout


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[med-svn] r14726 - trunk/packages/mgltools/mgltools-external-get-orig-source

2013-09-17 Thread Steffen Möller

Author: moeller
Date: 2013-09-17 11:29:59 + (Tue, 17 Sep 2013)
New Revision: 14726

Modified:
   trunk/packages/mgltools/mgltools-external-get-orig-source/get-orig-source
Log:
Added avoidance of local gzip files for packing from CVS of MGLTools.


Modified: 
trunk/packages/mgltools/mgltools-external-get-orig-source/get-orig-source
===
--- trunk/packages/mgltools/mgltools-external-get-orig-source/get-orig-source   
2013-09-16 17:48:11 UTC (rev 14725)
+++ trunk/packages/mgltools/mgltools-external-get-orig-source/get-orig-source   
2013-09-17 11:29:59 UTC (rev 14726)
@@ -95,7 +95,7 @@
 mv "$package" "$origDirname"
 
 echo -n "I: Number of files in package: "
-GZIP=-9 tar --exclude CVS -czvf "$TARDIR/$origFilename" "$origDirname" | wc -l
+GZIP=-9n tar --exclude CVS -czvf "$TARDIR/$origFilename" "$origDirname" | wc -l
 mv "$origDirname" "$package"
 echo "I: done"
 


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[med-svn] r14731 - in trunk/packages/treeview/trunk/debian: . patches

[med-svn] [freecontact] branch master updated (e34a020 -> 68d1782)

[med-svn] r14730 - in trunk/packages/mira/trunk/debian: . patches

[med-svn] [freecontact] 01/01: addressing bugs concerning SSE2 instructions, and =item perlpod usage

[med-svn] r14729 - in trunk/packages/dicom3tools/tags: . 1.00~20130914-1/debian

[med-svn] r14727 - trunk/packages/mgltools/pmv/trunk/debian/patches

[med-svn] r14728 - trunk/packages/mgltools

[med-svn] r14726 - trunk/packages/mgltools/mgltools-external-get-orig-source

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