[med-svn] r15053 - in trunk/packages/R: r-bioc-affy r-bioc-affy/tags r-bioc-genomicranges r-bioc-genomicranges/tags
Author: tille Date: 2013-10-30 06:55:54 + (Wed, 30 Oct 2013) New Revision: 15053 Added: trunk/packages/R/r-bioc-affy/tags/ trunk/packages/R/r-bioc-affy/tags/1.38.1-1/ trunk/packages/R/r-bioc-genomicranges/tags/ trunk/packages/R/r-bioc-genomicranges/tags/1.12.4-1/ Log: Tagged just accepted packages ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15052 - trunk/packages/gnumed-client/trunk/debian
Author: tille
Date: 2013-10-29 21:59:28 + (Tue, 29 Oct 2013)
New Revision: 15052
Modified:
trunk/packages/gnumed-client/trunk/debian/changelog
trunk/packages/gnumed-client/trunk/debian/control
Log:
Prepare new upstream version but needs more info from upstream
Modified: trunk/packages/gnumed-client/trunk/debian/changelog
===
--- trunk/packages/gnumed-client/trunk/debian/changelog 2013-10-29 21:34:15 UTC
(rev 15051)
+++ trunk/packages/gnumed-client/trunk/debian/changelog 2013-10-29 21:59:28 UTC
(rev 15052)
@@ -1,3 +1,15 @@
+gnumed-client (1.4.0+dfsg-1) UNRELEASED; urgency=low
+
+ * New upstream version
+ * debian/control:
+ - Depends: python-pip
+ - Suggests: qrisk2
+ TODO:
+ - adapt config file
+ - Hint to users to specify organisation before starting first time
+
+ -- Andreas Tille Tue, 29 Oct 2013 22:47:56 +0100
+
gnumed-client (1.3.9+dfsg-1) unstable; urgency=low
* New upstream version
Modified: trunk/packages/gnumed-client/trunk/debian/control
===
--- trunk/packages/gnumed-client/trunk/debian/control 2013-10-29 21:34:15 UTC
(rev 15051)
+++ trunk/packages/gnumed-client/trunk/debian/control 2013-10-29 21:59:28 UTC
(rev 15052)
@@ -27,7 +27,8 @@
hunspell | aspell | ispell | myspell-dictionary | hspell,
python-gnuplot,
texlive-latex-base,
- imagemagick
+ imagemagick,
+ python-pip
Recommends: gnumed-doc (= ${source:Version}),
ginkgocadx | aeskulap | amide | dicomscope | imagej | xmedcon,
xsane (>= 0.991),
@@ -57,7 +58,8 @@
autokey-qt | autokey-gtk,
wakeonlan | etherwake | gwakeonlan,
nvram-wakeup,
- entangle
+ entangle,
+ qrisk2
Provides: ${python:Provides}
Description: medical practice management - Client
This is the GNUmed Electronic Medical Record. Its purpose is
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[med-svn] r15051 - trunk/packages/staden/trunk/debian/patches
Author: tille
Date: 2013-10-29 21:34:15 + (Tue, 29 Oct 2013)
New Revision: 15051
Added:
trunk/packages/staden/trunk/debian/patches/hardening_format-security.patch
Modified:
trunk/packages/staden/trunk/debian/patches/series
Log:
Patch to build using -Werror=format-security
Added:
trunk/packages/staden/trunk/debian/patches/hardening_format-security.patch
===
--- trunk/packages/staden/trunk/debian/patches/hardening_format-security.patch
(rev 0)
+++ trunk/packages/staden/trunk/debian/patches/hardening_format-security.patch
2013-10-29 21:34:15 UTC (rev 15051)
@@ -0,0 +1,61 @@
+Author: Andreas Tille
+LastChanged: Tue, 29 Oct 2013 22:26:41 +0100
+Description: Build using Debian hardening options
+ When using -Werror=format-security the following patches are needed
+
+--- a/gap4/gap-error.c
b/gap4/gap-error.c
+@@ -89,7 +89,7 @@ void error_sig(int sig) {
+ }
+
+ static void xperror_out_func(char *name, char *str) {
+-verror(ERR_FATAL, name, str);
++verror(ERR_FATAL, name, "%s", str);
+ }
+
+ /* NOT FATAL */
+--- a/gap4/show_relationships.c
b/gap4/show_relationships.c
+@@ -34,7 +34,7 @@ int show_relationships(GapIO *io,
+ cright = io_crnbr(io, contigs[i].contig);
+
+ /* print contig information */
+- vmessage(contig_line);
++ vmessage("%s", contig_line);
+ vmessage("%25d %8d %15d %8d\n", contigs[i].contig,
+clen, cleft, cright);
+
+@@ -66,7 +66,7 @@ int show_relationships(GapIO *io,
+ } else if (ordered == 0) {
+
+ /* print contig information */
+- vmessage(contig_line);
++ vmessage("%s", contig_line);
+
+ for (i = 0; i < num_contigs; i++){
+ clen = io_clength(io, contigs[i].contig);
+@@ -106,7 +106,7 @@ int show_relationships(GapIO *io,
+ cright = io_crnbr(io, contigs[i].contig);
+
+ /* print contig information */
+- vmessage(contig_line);
++ vmessage("%s", contig_line);
+ vmessage("%25d %8d %15d %8d\n",contigs[i].contig,
+clen, cleft, cright);
+
+--- a/gap5/tg_gio.c
b/gap5/tg_gio.c
+@@ -20,11 +20,11 @@
+ /* Open/close/commit */
+
+ void xperror_fatal(char *name, char *str) {
+-verror(ERR_FATAL, name, str);
++verror(ERR_FATAL, name, "%s", str);
+ }
+
+ void xperror_warn(char *name, char *str) {
+-verror(ERR_WARN, name, str);
++verror(ERR_WARN, name, "%s", str);
+ }
+
+ static int db_version = DB_VERSION;
Modified: trunk/packages/staden/trunk/debian/patches/series
===
--- trunk/packages/staden/trunk/debian/patches/series 2013-10-29 20:25:54 UTC
(rev 15050)
+++ trunk/packages/staden/trunk/debian/patches/series 2013-10-29 21:34:15 UTC
(rev 15051)
@@ -1,2 +1,3 @@
remove_svnversion_dep
make_help_menus_work
+hardening_format-security.patch
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[med-svn] r15050 - trunk/packages/staden/trunk/debian
Author: tille
Date: 2013-10-29 20:25:54 + (Tue, 29 Oct 2013)
New Revision: 15050
Modified:
trunk/packages/staden/trunk/debian/compat
trunk/packages/staden/trunk/debian/control
Log:
Some more changes usually done in Debian Med team
Modified: trunk/packages/staden/trunk/debian/compat
===
--- trunk/packages/staden/trunk/debian/compat 2013-10-29 20:19:48 UTC (rev
15049)
+++ trunk/packages/staden/trunk/debian/compat 2013-10-29 20:25:54 UTC (rev
15050)
@@ -1 +1 @@
-8
+9
Modified: trunk/packages/staden/trunk/debian/control
===
--- trunk/packages/staden/trunk/debian/control 2013-10-29 20:19:48 UTC (rev
15049)
+++ trunk/packages/staden/trunk/debian/control 2013-10-29 20:25:54 UTC (rev
15050)
@@ -1,21 +1,36 @@
Source: staden
-Section: utils
-Priority: extra
-Maintainer: Tim Booth
-Build-Depends:
- debhelper (>= 8), libstaden-read-dev (>= 1.13.1), itcl3-dev, itk3-dev,
zlib1g-dev, libbz2-dev, liblzma-dev,
- tcl8.5-dev, tk8.5-dev, tklib, libpng12-dev, libncurses5-dev, iwidgets4,
- libcurl4-openssl-dev
-Standards-Version: 3.9.3
+Maintainer: Debian Med Packaging Team
+Uploaders: Tim Booth ,
+ Andreas Tille
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ libstaden-read-dev (>= 1.13.1),
+ itcl3-dev,
+ itk3-dev,
+ zlib1g-dev,
+ libbz2-dev,
+ liblzma-dev,
+ tcl-dev,
+ tk-dev,
+ tklib,
+ libpng-dev,
+ libncurses5-dev,
+ iwidgets4,
+ libcurl4-openssl-dev
+Standards-Version: 3.9.4
Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/staden/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/staden/trunk/
Homepage: https://staden.sf.net
Package: staden
Architecture: any
-Depends: ${misc:Depends}, ${shlibs:Depends}, staden-common (=
${source:Version}), staden-io-lib-utils
-Recommends: staden-doc
-Description: DNA sequence assembly (Gap4 and Gap5), editing and analysis tools
(Spin)
+Depends: ${misc:Depends},
+ ${shlibs:Depends},
+ staden-common (= ${source:Version}),
+ staden-io-lib-utils
+Suggests: staden-doc
+Description: DNA sequence assembly (Gap4/Gap5), editing and analysis tools
Staden is a fully developed set of DNA sequence assembly (Gap4 and
Gap5), editing and analysis tools (Spin).
.
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[med-svn] r15049 - trunk/packages/gnumed-server/trunk/debian
Author: tille Date: 2013-10-29 20:19:48 + (Tue, 29 Oct 2013) New Revision: 15049 Modified: trunk/packages/gnumed-server/trunk/debian/changelog Log: Prepare upload of new upstream version. Modified: trunk/packages/gnumed-server/trunk/debian/changelog === --- trunk/packages/gnumed-server/trunk/debian/changelog 2013-10-29 19:29:33 UTC (rev 15048) +++ trunk/packages/gnumed-server/trunk/debian/changelog 2013-10-29 20:19:48 UTC (rev 15049) @@ -1,3 +1,9 @@ +gnumed-server (19.0-1) UNRELEASED; urgency=low + + * New upstream version + + -- Andreas Tille Tue, 29 Oct 2013 21:04:52 +0100 + gnumed-server (18.9-1) unstable; urgency=low * New upstream version ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15048 - trunk/packages/staden/trunk/debian
Author: tille
Date: 2013-10-29 19:29:33 + (Tue, 29 Oct 2013)
New Revision: 15048
Modified:
trunk/packages/staden/trunk/debian/changelog
trunk/packages/staden/trunk/debian/control
trunk/packages/staden/trunk/debian/copyright
trunk/packages/staden/trunk/debian/watch
Log:
Merge code available from competing packaging from
git://anonscm.debian.org/git/collab-maint/staden.git into this place where we
should continue the work on staden
Modified: trunk/packages/staden/trunk/debian/changelog
===
--- trunk/packages/staden/trunk/debian/changelog2013-10-29 18:54:39 UTC
(rev 15047)
+++ trunk/packages/staden/trunk/debian/changelog2013-10-29 19:29:33 UTC
(rev 15048)
@@ -1,5 +1,7 @@
staden (2.0.0b9-1) UNRELEASED; urgency=low
+ * Initial release to Debian (Closes: #710324)
+
* Fix dependency for Debian after realising io-lib was already packaged
as libstaden-read
Modified: trunk/packages/staden/trunk/debian/control
===
--- trunk/packages/staden/trunk/debian/control 2013-10-29 18:54:39 UTC (rev
15047)
+++ trunk/packages/staden/trunk/debian/control 2013-10-29 19:29:33 UTC (rev
15048)
@@ -7,6 +7,8 @@
tcl8.5-dev, tk8.5-dev, tklib, libpng12-dev, libncurses5-dev, iwidgets4,
libcurl4-openssl-dev
Standards-Version: 3.9.3
+Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/staden/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/staden/trunk/
Homepage: https://staden.sf.net
Package: staden
@@ -14,13 +16,84 @@
Depends: ${misc:Depends}, ${shlibs:Depends}, staden-common (=
${source:Version}), staden-io-lib-utils
Recommends: staden-doc
Description: DNA sequence assembly (Gap4 and Gap5), editing and analysis tools
(Spin)
- A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and
- analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.
+ Staden is a fully developed set of DNA sequence assembly (Gap4 and
+ Gap5), editing and analysis tools (Spin).
+ .
+ Gap4 performs sequence assembly, contig ordering based on read pair
+ data, contig joining based on sequence comparisons, assembly checking,
+ repeat searching, experiment suggestion, read pair analysis and contig
+ editing. It has graphical views of contigs, templates, readings and
+ traces which all scroll in register. Contig editor searches and
+ experiment suggestion routines use confidence values to calculate the
+ confidence of the consensus sequence and hence identify only places
+ requiring visual trace inspection or extra data. The result is
+ extremely rapid finishing and a consensus of known accuracy.
+ .
+ Pregap4 provides a graphical user interface to set up the processing
+ required to prepare trace data for assembly or analysis, and automates
+ these processes.
+ .
+ Trev is a rapid and flexible viewer and editor for ABI, ALF, SCF and
+ ZTR trace files.
+ .
+ Prefinish analyses partially completed sequence assemblies and suggests
+ the most efficient set of experiments to help finish the project.
+ .
+ Tracediff and hetscan automatically locate mutations by comparing trace
+ data against reference traces. They annotate the mutations found ready
+ for viewing in gap4.
+ .
+ Spin analyses nucleotide sequences to find genes, restriction sites,
+ motifs, etc. It can perform translations, find open reading frames,
+ count codons, etc. Many results are presented graphically and a sliding
+ sequence window is linked to the graphics cursor. Spin also compares
+ pairs of sequences in many ways. It has very rapid dot matrix analysis,
+ global and local alignment algorithms, plus a sliding sequence window
+ linked to the graphical plots. It can compare nucleic acid against
+ nucleic acid, protein against protein, and protein against nucleic
+ acid.
Package: staden-common
Architecture: all
Depends: ${misc:Depends}
Recommends: ksh | zsh
Description: Architecture independent files for Staden
- This package contains the architecture independent data files and scripts that
- come with the Staden package.
+ Staden is a fully developed set of DNA sequence assembly (Gap4 and
+ Gap5), editing and analysis tools (Spin).
+ .
+ Gap4 performs sequence assembly, contig ordering based on read pair
+ data, contig joining based on sequence comparisons, assembly checking,
+ repeat searching, experiment suggestion, read pair analysis and contig
+ editing. It has graphical views of contigs, templates, readings and
+ traces which all scroll in register. Contig editor searches and
+ experiment suggestion routines use confidence values to calculate the
+ confidence of the consensus sequence and hence identify only places
+ requiring visual trace inspection or extra data. The result is
+ extremely rapid finishing and a consensus of known accuracy.
+ .
+ Pregap4 provides a graphical user interface to set up the processing
+ required to prep
[med-svn] r15047 - trunk/packages/uc-echo/trunk/debian
Author: alteholz Date: 2013-10-29 18:54:39 + (Tue, 29 Oct 2013) New Revision: 15047 Modified: trunk/packages/uc-echo/trunk/debian/changelog trunk/packages/uc-echo/trunk/debian/control trunk/packages/uc-echo/trunk/debian/uc-echo.lintian-overrides Log: use canonical vcs-fields Modified: trunk/packages/uc-echo/trunk/debian/changelog === --- trunk/packages/uc-echo/trunk/debian/changelog 2013-10-29 18:41:39 UTC (rev 15046) +++ trunk/packages/uc-echo/trunk/debian/changelog 2013-10-29 18:54:39 UTC (rev 15047) @@ -1,9 +1,10 @@ uc-echo (1.12-2) unstable; urgency=low * debian/control: use g++-multilib only when available (Closes: #727657) + * debian/control: use canonical vcs-fields * add patch to compile on mips/mipsel - -- Thorsten Alteholz Mon, 28 Oct 2013 19:00:07 +0100 + -- Thorsten Alteholz Tue, 29 Oct 2013 19:00:07 +0100 uc-echo (1.12-1) unstable; urgency=low Modified: trunk/packages/uc-echo/trunk/debian/control === --- trunk/packages/uc-echo/trunk/debian/control 2013-10-29 18:41:39 UTC (rev 15046) +++ trunk/packages/uc-echo/trunk/debian/control 2013-10-29 18:54:39 UTC (rev 15047) @@ -10,8 +10,8 @@ g++-multilib [amd64 i386 kfreebsd-amd64 mips mipsel powerpc ppc64 s390x sparc sparc64 x32] Standards-Version: 3.9.4 Homepage: http://uc-echo.sourceforge.net/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/uc-echo/trunk/ -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/uc-echo/trunk/ +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/uc-echo/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/uc-echo/trunk/ Package: uc-echo Architecture: any Modified: trunk/packages/uc-echo/trunk/debian/uc-echo.lintian-overrides === --- trunk/packages/uc-echo/trunk/debian/uc-echo.lintian-overrides 2013-10-29 18:41:39 UTC (rev 15046) +++ trunk/packages/uc-echo/trunk/debian/uc-echo.lintian-overrides 2013-10-29 18:54:39 UTC (rev 15047) @@ -1,8 +1,8 @@ # these flags are really used -uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/HashMerge -uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/NeighborJoin -uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/NeighborJoinParam uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/NeighborMerge uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/Voting -uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/hashing +#uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/HashMerge +#uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/NeighborJoin +#uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/NeighborJoinParam +#uc-echo: hardening-no-fortify-functions usr/lib/uc-echo/hashing ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15046 - in trunk/packages/uc-echo/trunk/debian: . patches
Author: alteholz Date: 2013-10-29 18:41:39 + (Tue, 29 Oct 2013) New Revision: 15046 Added: trunk/packages/uc-echo/trunk/debian/patches/m64-flag.patch Modified: trunk/packages/uc-echo/trunk/debian/changelog trunk/packages/uc-echo/trunk/debian/control trunk/packages/uc-echo/trunk/debian/patches/include.patch trunk/packages/uc-echo/trunk/debian/patches/series trunk/packages/uc-echo/trunk/debian/rules Log: make it compile on more archs Modified: trunk/packages/uc-echo/trunk/debian/changelog === --- trunk/packages/uc-echo/trunk/debian/changelog 2013-10-29 14:33:53 UTC (rev 15045) +++ trunk/packages/uc-echo/trunk/debian/changelog 2013-10-29 18:41:39 UTC (rev 15046) @@ -1,3 +1,10 @@ +uc-echo (1.12-2) unstable; urgency=low + + * debian/control: use g++-multilib only when available (Closes: #727657) + * add patch to compile on mips/mipsel + + -- Thorsten Alteholz Mon, 28 Oct 2013 19:00:07 +0100 + uc-echo (1.12-1) unstable; urgency=low * initial version (Closes: #704902) Modified: trunk/packages/uc-echo/trunk/debian/control === --- trunk/packages/uc-echo/trunk/debian/control 2013-10-29 14:33:53 UTC (rev 15045) +++ trunk/packages/uc-echo/trunk/debian/control 2013-10-29 18:41:39 UTC (rev 15046) @@ -7,7 +7,7 @@ python-all-dev (>=2.6), python-scipy, python-numpy, - g++-multilib + g++-multilib [amd64 i386 kfreebsd-amd64 mips mipsel powerpc ppc64 s390x sparc sparc64 x32] Standards-Version: 3.9.4 Homepage: http://uc-echo.sourceforge.net/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/uc-echo/trunk/ Modified: trunk/packages/uc-echo/trunk/debian/patches/include.patch === --- trunk/packages/uc-echo/trunk/debian/patches/include.patch 2013-10-29 14:33:53 UTC (rev 15045) +++ trunk/packages/uc-echo/trunk/debian/patches/include.patch 2013-10-29 18:41:39 UTC (rev 15046) @@ -2,8 +2,8 @@ Description: add #include for definition of open() Index: echo_v1_12/MMAP.hpp === echo_v1_12.orig/MMAP.hpp 2013-04-02 17:40:01.0 +0200 -+++ echo_v1_12/MMAP.hpp2013-04-02 17:40:01.0 +0200 +--- echo_v1_12.orig/MMAP.hpp 2013-10-28 11:44:22.0 +0100 echo_v1_12/MMAP.hpp2013-10-28 11:44:22.0 +0100 @@ -6,6 +6,7 @@ #include #include Added: trunk/packages/uc-echo/trunk/debian/patches/m64-flag.patch === --- trunk/packages/uc-echo/trunk/debian/patches/m64-flag.patch (rev 0) +++ trunk/packages/uc-echo/trunk/debian/patches/m64-flag.patch 2013-10-29 18:41:39 UTC (rev 15046) @@ -0,0 +1,17 @@ +Author: Thorsten Alteholz +Description: don't use -m64 on all architectures +Index: echo_v1_12/Makefile +=== +--- echo_v1_12.orig/Makefile 2013-10-28 11:44:22.0 +0100 echo_v1_12/Makefile2013-10-28 11:45:58.0 +0100 +@@ -1,5 +1,9 @@ + CXX = g++ +-CXXFLAGS += -Wall -O3 -m64 $(CLFAGS) $(CPPFLAGS) ++# ++# the flag -m64 has been removed here ++# it will be applied by debian/ruls as it is not available ++# on certain architectures like mips ++CXXFLAGS += -Wall -O3 $(CLFAGS) $(CPPFLAGS) + HEADERS = *.hpp + LIB = DNASeq.o NeighborSet.o KmerHashMap.o + TARGETS = hashing NeighborJoin NeighborJoinParam NeighborMerge Voting HashMerge Modified: trunk/packages/uc-echo/trunk/debian/patches/series === --- trunk/packages/uc-echo/trunk/debian/patches/series 2013-10-29 14:33:53 UTC (rev 15045) +++ trunk/packages/uc-echo/trunk/debian/patches/series 2013-10-29 18:41:39 UTC (rev 15046) @@ -1,2 +1,3 @@ hardening-flags.patch include.patch +m64-flag.patch Modified: trunk/packages/uc-echo/trunk/debian/rules === --- trunk/packages/uc-echo/trunk/debian/rules 2013-10-29 14:33:53 UTC (rev 15045) +++ trunk/packages/uc-echo/trunk/debian/rules 2013-10-29 18:41:39 UTC (rev 15046) @@ -2,13 +2,28 @@ # DH_VERBOSE := 1 +DEB_HOST_ARCH ?= $(shell dpkg-architecture -qDEB_HOST_ARCH) LIBRARY_PATH=/usr/lib/$(gcc -print-multiarch) CPATH=/usr/include/$(gcc -print-multiarch) export LIBRARY_PATH CPATH +ADDCXXFLAGS = -m64 +ifeq ($(DEB_HOST_ARCH),mips) +ADDCXXFLAGS = +endif +ifeq ($(DEB_HOST_ARCH),mipsel) +ADDCXXFLAGS = +endif +CXXFLAGS += $(ADDCXXFLAGS) %: dh $@ --with python2 +override_dh_auto_build: + echo "I: DEB_HOST_ARCH: $(DEB_HOST_ARCH)" + echo "I: ADDCXXFLAGS: $(ADDCXXFLAGS)" + echo "I: CXXFLAGS: $(CXXFLAGS)" + dh_auto_build + override_dh_auto_install: dh_auto_install dh_installchangelogs README ___
[med-svn] r15045 - trunk/packages/libace-perl/tags
Author: tille Date: 2013-10-29 14:33:53 + (Tue, 29 Oct 2013) New Revision: 15045 Added: trunk/packages/libace-perl/tags/1.92-3/ Log: Tagged 1.92-3 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15044 - trunk/packages/libace-perl/trunk/debian
Author: tille Date: 2013-10-29 14:32:58 + (Tue, 29 Oct 2013) New Revision: 15044 Modified: trunk/packages/libace-perl/trunk/debian/changelog Log: Upload to unstable Modified: trunk/packages/libace-perl/trunk/debian/changelog === --- trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 14:12:04 UTC (rev 15043) +++ trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 14:32:58 UTC (rev 15044) @@ -1,4 +1,4 @@ -libace-perl (1.92-3) UNRELEASED; urgency=low +libace-perl (1.92-3) unstable; urgency=low * debian/source/format: 3.0 (quilt) * debian/control: ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15043 - trunk/packages/libace-perl/trunk/debian
Author: tille Date: 2013-10-29 14:12:04 + (Tue, 29 Oct 2013) New Revision: 15043 Removed: trunk/packages/libace-perl/trunk/debian/patches/ Modified: trunk/packages/libace-perl/trunk/debian/changelog trunk/packages/libace-perl/trunk/debian/rules Log: Redo patches which are finally not helpfull but rather trust dh_auto_build to propagate hardening options Modified: trunk/packages/libace-perl/trunk/debian/changelog === --- trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 13:06:34 UTC (rev 15042) +++ trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 14:12:04 UTC (rev 15043) @@ -8,7 +8,9 @@ - canonical Vcs fields * debian/README.Debian: Remark about hard coding of build directory in probably unused file. - * debian/rules: use short dh + * debian/rules: + - use short dh + - enable propagation of hardening options * debian/upstream: Take over content of reference (DOI was wrongly specified at URL so I decided to remove) * debian/ace.1: automatically created manpage was broken - use help2man Modified: trunk/packages/libace-perl/trunk/debian/rules === --- trunk/packages/libace-perl/trunk/debian/rules 2013-10-29 13:06:34 UTC (rev 15042) +++ trunk/packages/libace-perl/trunk/debian/rules 2013-10-29 14:12:04 UTC (rev 15043) @@ -26,8 +26,7 @@ # Directory does not exist. Shall I create it for you? [y] # Directory for the acebrowser HTML files and images (~username ok): [/usr/local/apache/htdocs/ace] perl -e "print qq(3\ny\n$(CURDIR)/debian/$(PACKAGE)/etc/libace-perl\ny\n$(CURDIR)/debian/$(PACKAGE)/usr/lib/cgi-bin\ny\n$(CURDIR)/debian/$(PACKAGE)/usr/share/$(PACKAGE))" | $(PERL) Makefile.PL INSTALLDIRS=vendor - # $(MAKE) OPTIMIZE="$(CFLAGS)" LD_RUN_PATH="" - $(MAKE) CFLAGS="$(CFLAGS)" LD_RUN_PATH="" LDFLAGS=$(LDFLAGS) + dh_auto_build -- OPTIMIZE="$(CFLAGS)" LD_RUN_PATH="" OTHERLDFLAGS="$(LDFLAGS)" override_dh_auto_test: # Disabled as they need internet access. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15042 - in trunk/packages/libace-perl/trunk/debian: . patches
Author: tille Date: 2013-10-29 13:06:34 + (Tue, 29 Oct 2013) New Revision: 15042 Added: trunk/packages/libace-perl/trunk/debian/patches/ trunk/packages/libace-perl/trunk/debian/patches/hardening.patch trunk/packages/libace-perl/trunk/debian/patches/series Modified: trunk/packages/libace-perl/trunk/debian/rules Log: Hardening flags in compiler; LDFLAGS is not yet solved Added: trunk/packages/libace-perl/trunk/debian/patches/hardening.patch === --- trunk/packages/libace-perl/trunk/debian/patches/hardening.patch (rev 0) +++ trunk/packages/libace-perl/trunk/debian/patches/hardening.patch 2013-10-29 13:06:34 UTC (rev 15042) @@ -0,0 +1,17 @@ +Author: Andreas Tille +LastChanged: Tue, 29 Oct 2013 11:08:14 +0100 +Description: Try to propagate hardening flags + +--- a/acelib/wmake/LINUX_DEF b/acelib/wmake/LINUX_DEF +@@ -16,8 +16,8 @@ + # + + NAME = LINUX +-COMPILER = gcc -g -Wall -O2 -DACEDB4 +-LINKER = gcc -g ++COMPILER = gcc -g -Wall -O2 -DACEDB4 $(CFLAGS) ++LINKER = gcc -g $(LDFLAGS) + USEROPTS=-fPIC + + LIBS = -lm Added: trunk/packages/libace-perl/trunk/debian/patches/series === --- trunk/packages/libace-perl/trunk/debian/patches/series (rev 0) +++ trunk/packages/libace-perl/trunk/debian/patches/series 2013-10-29 13:06:34 UTC (rev 15042) @@ -0,0 +1 @@ +hardening.patch Modified: trunk/packages/libace-perl/trunk/debian/rules === --- trunk/packages/libace-perl/trunk/debian/rules 2013-10-29 12:42:34 UTC (rev 15041) +++ trunk/packages/libace-perl/trunk/debian/rules 2013-10-29 13:06:34 UTC (rev 15042) @@ -26,7 +26,8 @@ # Directory does not exist. Shall I create it for you? [y] # Directory for the acebrowser HTML files and images (~username ok): [/usr/local/apache/htdocs/ace] perl -e "print qq(3\ny\n$(CURDIR)/debian/$(PACKAGE)/etc/libace-perl\ny\n$(CURDIR)/debian/$(PACKAGE)/usr/lib/cgi-bin\ny\n$(CURDIR)/debian/$(PACKAGE)/usr/share/$(PACKAGE))" | $(PERL) Makefile.PL INSTALLDIRS=vendor - $(MAKE) OPTIMIZE="$(CFLAGS)" LD_RUN_PATH="" + # $(MAKE) OPTIMIZE="$(CFLAGS)" LD_RUN_PATH="" + $(MAKE) CFLAGS="$(CFLAGS)" LD_RUN_PATH="" LDFLAGS=$(LDFLAGS) override_dh_auto_test: # Disabled as they need internet access. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15041 - trunk/packages/libace-perl/trunk/debian
Author: tille Date: 2013-10-29 12:42:34 + (Tue, 29 Oct 2013) New Revision: 15041 Modified: trunk/packages/libace-perl/trunk/debian/README.Debian trunk/packages/libace-perl/trunk/debian/changelog trunk/packages/libace-perl/trunk/debian/copyright trunk/packages/libace-perl/trunk/debian/rules Log: DEP5 issues; fixed Perl PATH in examples Modified: trunk/packages/libace-perl/trunk/debian/README.Debian === --- trunk/packages/libace-perl/trunk/debian/README.Debian 2013-10-29 12:29:17 UTC (rev 15040) +++ trunk/packages/libace-perl/trunk/debian/README.Debian 2013-10-29 12:42:34 UTC (rev 15041) @@ -3,7 +3,7 @@ When rebuilding the package with latest packaging standards and comparing with previous content it was noticed that some settings -definitely are not sanely choosen. Since this was also not done +definitely are not sanely chosen. Since this was also not done before this fact is not changed but mentioned here to enable tracking down potential problems quickly. Se questionable settings are in the file Modified: trunk/packages/libace-perl/trunk/debian/changelog === --- trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 12:29:17 UTC (rev 15040) +++ trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 12:42:34 UTC (rev 15041) @@ -13,6 +13,7 @@ specified at URL so I decided to remove) * debian/ace.1: automatically created manpage was broken - use help2man to create some valid ace.1 + * debian/copyright: DEP5 -- Andreas Tille Tue, 29 Oct 2013 11:08:14 +0100 Modified: trunk/packages/libace-perl/trunk/debian/copyright === --- trunk/packages/libace-perl/trunk/debian/copyright 2013-10-29 12:29:17 UTC (rev 15040) +++ trunk/packages/libace-perl/trunk/debian/copyright 2013-10-29 12:42:34 UTC (rev 15041) @@ -1,10 +1,13 @@ -Format: http://dep.debian.net/deps/dep5/ -Name: AcePerl -Contact : Lincoln Stein -Source : http://search.cpan.org/CPAN/authors/id/L/LD/LDS/AcePerl-1.92.tar.gz +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: AcePerl +Upstream-Contact: Lincoln Stein +Source: http://search.cpan.org/CPAN/authors/id/L/LD/LDS/AcePerl-1.92.tar.gz +Files: * Copyright: © 1998 Cold Spring Harbor Laboratory License: Perl + +License: Perl This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See the Artistic License file in the main Perl distribution for specific terms and conditions of @@ -35,11 +38,10 @@ Ace/Sequence/Feature.pm Ace/Sequence/Gene.pm Ace/Sequence/Transcript.pm Ace/Sequence.pm Copyright: © 1997-1999 Lincoln D. Stein License: Perl - (see above) Files: acelib/* Copyright: © 1991-1998 J Thierry-Mieg and R Durbin -License: Probably a mixture of GPL-2+ and LGPL-2+ +License: LGPL-2+ This file is part of the ACEDB genome database package, written by Richard Durbin (Sanger Centre, UK) r...@sanger.ac.uk, and Jean Thierry-Mieg (CRBM du CNRS, France) m...@kaa.crbm.cnrs-mop.fr Modified: trunk/packages/libace-perl/trunk/debian/rules === --- trunk/packages/libace-perl/trunk/debian/rules 2013-10-29 12:29:17 UTC (rev 15040) +++ trunk/packages/libace-perl/trunk/debian/rules 2013-10-29 12:42:34 UTC (rev 15041) @@ -46,3 +46,6 @@ rmdir --ignore-fail-on-non-empty --parents --verbose \ $(TMP)/usr/share/perl5 +override_dh_installexamples: + dh_installexamples + sed -i 's?#!/usr/local/bin/perl?#!/usr/bin/perl?' $(TMP)/usr/share/doc/$(PACKAGE)/examples/*.pl ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15040 - trunk/packages/libace-perl/trunk/debian
Author: tille Date: 2013-10-29 12:29:17 + (Tue, 29 Oct 2013) New Revision: 15040 Added: trunk/packages/libace-perl/trunk/debian/ace.1 trunk/packages/libace-perl/trunk/debian/manpages Modified: trunk/packages/libace-perl/trunk/debian/changelog trunk/packages/libace-perl/trunk/debian/rules Log: Makes sure we will not end up with an empty manpage Added: trunk/packages/libace-perl/trunk/debian/ace.1 === --- trunk/packages/libace-perl/trunk/debian/ace.1 (rev 0) +++ trunk/packages/libace-perl/trunk/debian/ace.1 2013-10-29 12:29:17 UTC (rev 15040) @@ -0,0 +1,135 @@ +.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.43.3. +.TH NAME "1" "October 2013" "Name "readline::rl_completion_function" used only once: possible typo at ./ace line 162." "User Commands" +.SH NAME +ace \- Interactive Perl client for ACEDB +.SH SYNOPSIS +.B ace +[\fIoptions\fR] [\fIURL\fR] +.SH DESCRIPTION +.PP + AcePerl is an object-oriented Perl interface for the AceDB + database. It provides functionality for connecting to remote AceDB + databases, performing queries, fetching ACE objects, and updating + databases. The programmer's API is compatible with the JADE Java API, + and interoperable with the API used by BoulderIO. +.SH OPTIONS +.TP +\fB\-host\fR +Server host (localhost) +.TP +\fB\-port\fR +Server port (25) +.TP +\fB\-path\fR +Local database path (no default) +.TP +\fB\-url\fR + Server URL (see below +.TP +\fB\-login\fR +Username +.TP +\fB\-pass\fR +Password +.TP +\fB\-tcsh\fR +Use T\-shell completion mode +.TP +\fB\-save\fR +Save database updates automatically +.TP +\fB\-exec\fR +Run a command and quit +.PP +Respects the environment variables $ACEDB_HOST and $ACEDB_PORT, if present. +You can edit the command line using the cursor keys and emacs style +key bindings. Use up and down arrows (or ^P, ^N) to access the history. +The tab key completes partial commands. In tcsh mode, the tab key cycles +among the completions, otherwise pressing the tab key a second time lists +all the possibilities. +.PP +You may use multiple \fB\-exec\fR switches to run a sequence of commands, or +separate multiple commands in a single string by semicolons: +.IP +ace.pl \fB\-e\fR 'find Author Thierry\-Mieg*' \fB\-e\fR 'show' +ace.pl \fB\-e\fR 'find Author Thierry\-Mieg*; show' +.SS "Server URLs:" +.TP +rpcace://hostname:port +RPC server +.TP +sace://hostname:port +Socket server +.TP +tace:/path/to/database +Local database +.TP +\fI/path/to/database\fP +Local database +.IP +Usernames can be provided as sace://user@hostname:port +.PP +Name "readline::rl_special_prefixes" used only once: possible typo at ./ace line 161. +Unknown option: version +Usage: ./ace [options] [URL] +Interactive Perl client for ACEDB +.SS "Options (can be abbreviated):" +.TP +\fB\-host\fR +Server host (localhost) +.TP +\fB\-port\fR +Server port (25) +.TP +\fB\-path\fR +Local database path (no default) +.TP +\fB\-url\fR + Server URL (see below +.TP +\fB\-login\fR +Username +.TP +\fB\-pass\fR +Password +.TP +\fB\-tcsh\fR +Use T\-shell completion mode +.TP +\fB\-save\fR +Save database updates automatically +.TP +\fB\-exec\fR +Run a command and quit +.PP +Respects the environment variables $ACEDB_HOST and $ACEDB_PORT, if present. +You can edit the command line using the cursor keys and emacs style +key bindings. Use up and down arrows (or ^P, ^N) to access the history. +The tab key completes partial commands. In tcsh mode, the tab key cycles +among the completions, otherwise pressing the tab key a second time lists +all the possibilities. +.PP +You may use multiple \fB\-exec\fR switches to run a sequence of commands, or +separate multiple commands in a single string by semicolons: +.IP +ace.pl \fB\-e\fR 'find Author Thierry\-Mieg*' \fB\-e\fR 'show' +ace.pl \fB\-e\fR 'find Author Thierry\-Mieg*; show' +.SS "Server URLs:" +.TP +rpcace://hostname:port +RPC server +.TP +sace://hostname:port +Socket server +.TP +tace:/path/to/database +Local database +.TP +\fI/path/to/database\fP +Local database +.IP +Usernames can be provided as sace://user@hostname:port +.SH AUTHOR +This manual page was created using help2man for the Debian distribution by +Andreas Tille . It can be used freely for any other +distribution. Modified: trunk/packages/libace-perl/trunk/debian/changelog === --- trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 10:55:44 UTC (rev 15039) +++ trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 12:29:17 UTC (rev 15040) @@ -11,6 +11,8 @@ * debian/rules: use short dh * debian/upstream: Take over content of reference (DOI was wrongly specified at URL so I decided to remove) + * debian/ace.1: automatically created manpage was broken - use help2man +to create some valid ace.1 -- Andreas Tille Tue, 29 Oct 2013 11:
[med-svn] r15039 - trunk/packages/libace-perl/trunk/debian
Author: tille
Date: 2013-10-29 10:55:44 + (Tue, 29 Oct 2013)
New Revision: 15039
Added:
trunk/packages/libace-perl/trunk/debian/upstream
Removed:
trunk/packages/libace-perl/trunk/debian/reference
Modified:
trunk/packages/libace-perl/trunk/debian/changelog
Log:
references in d/upstream
Modified: trunk/packages/libace-perl/trunk/debian/changelog
===
--- trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 10:48:06 UTC
(rev 15038)
+++ trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 10:55:44 UTC
(rev 15039)
@@ -9,6 +9,8 @@
* debian/README.Debian: Remark about hard coding of build directory
in probably unused file.
* debian/rules: use short dh
+ * debian/upstream: Take over content of reference (DOI was wrongly
+specified at URL so I decided to remove)
-- Andreas Tille Tue, 29 Oct 2013 11:08:14 +0100
Deleted: trunk/packages/libace-perl/trunk/debian/reference
===
--- trunk/packages/libace-perl/trunk/debian/reference 2013-10-29 10:48:06 UTC
(rev 15038)
+++ trunk/packages/libace-perl/trunk/debian/reference 2013-10-29 10:55:44 UTC
(rev 15039)
@@ -1,12 +0,0 @@
-@article{Lincoln D.Stein12011998,
-author = {Stein, Lincoln D. and Thierry-Mieg, Jean},
-title={{Scriptable Access to the Caenorhabditis elegans Genome Sequence and
Other ACEDB Databases}},
-journal = {Genome Research},
-volume = {8},
-number = {12},
-pages = {1308-1315},
-doi = {10.1101/gr.8.12.1308},
-year = {1998},
-URL = {http://genome.cshlp.org/content/8/12/1308.abstract},
-eprint = {http://genome.cshlp.org/content/8/12/1308.full.pdf+html}
-}
Added: trunk/packages/libace-perl/trunk/debian/upstream
===
--- trunk/packages/libace-perl/trunk/debian/upstream
(rev 0)
+++ trunk/packages/libace-perl/trunk/debian/upstream2013-10-29 10:55:44 UTC
(rev 15039)
@@ -0,0 +1,11 @@
+Reference:
+ Author: Lincoln D. Stein and Jean Thierry-Mieg
+ Title: Scriptable Access to the Caenorhabditis elegans Genome Sequence and
Other ACEDB Databases
+ Journal: Genome Research
+ Year: 1998
+ Volume: 8
+ Number: 12
+ Pages: 1308-1315
+ PMID: 9872985
+ URL: http://genome.cshlp.org/content/8/12/1308.abstract
+ eprint: http://genome.cshlp.org/content/8/12/1308.full.pdf+html
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[med-svn] r15038 - trunk/packages/libace-perl/trunk/debian
Author: tille Date: 2013-10-29 10:48:06 + (Tue, 29 Oct 2013) New Revision: 15038 Added: trunk/packages/libace-perl/trunk/debian/README.Debian Modified: trunk/packages/libace-perl/trunk/debian/changelog trunk/packages/libace-perl/trunk/debian/rules Log: Use short dh in d/rules to profit from recent enhancements; document problem with fixed setting of build path at potentially harmless place in README.Debian Added: trunk/packages/libace-perl/trunk/debian/README.Debian === --- trunk/packages/libace-perl/trunk/debian/README.Debian (rev 0) +++ trunk/packages/libace-perl/trunk/debian/README.Debian 2013-10-29 10:48:06 UTC (rev 15038) @@ -0,0 +1,25 @@ +libace-perl for Debian +-- + +When rebuilding the package with latest packaging standards and +comparing with previous content it was noticed that some settings +definitely are not sanely choosen. Since this was also not done +before this fact is not changed but mentioned here to enable +tracking down potential problems quickly. Se questionable settings +are in the file + + /usr/lib/perl5/Ace/Browser/LocalSiteDefs.pm + +where the build directory remains hardcoded: + +$SITE_DEFS = '/tmp/buildd/libace-perl-1.92/debian/libace-perl/etc/libace-perl'; +$CGI_PATH = '/tmp/buildd/libace-perl-1.92/debian/libace-perl/usr/lib/cgi-bin'; +$HTML_PATH = '/tmp/buildd/libace-perl-1.92/debian/libace-perl/usr/share/libace-perl'; + +Since the relevant directories are not existent inside the package this +is most probably harmless but in case a user might happen to try the +server features via CGI this should be reported in a potential bug +report. + + + -- Andreas Tille Tue, 29 Oct 2013 11:08:14 +0100 Modified: trunk/packages/libace-perl/trunk/debian/changelog === --- trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 10:08:53 UTC (rev 15037) +++ trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 10:48:06 UTC (rev 15038) @@ -6,6 +6,9 @@ - cme fix dpkg-control - debhelper 9 - canonical Vcs fields + * debian/README.Debian: Remark about hard coding of build directory +in probably unused file. + * debian/rules: use short dh -- Andreas Tille Tue, 29 Oct 2013 11:08:14 +0100 Modified: trunk/packages/libace-perl/trunk/debian/rules === --- trunk/packages/libace-perl/trunk/debian/rules 2013-10-29 10:08:53 UTC (rev 15037) +++ trunk/packages/libace-perl/trunk/debian/rules 2013-10-29 10:48:06 UTC (rev 15038) @@ -1,32 +1,13 @@ #!/usr/bin/make -f -# This debian/rules file is provided as a template for normal perl -# packages. It was created by Marc Brockschmidt for -# the Debian Perl Group (http://pkg-perl.alioth.debian.org/) but may -# be used freely wherever it is useful. -# Uncomment this to turn on verbose mode. -#export DH_VERBOSE=1 - -# If set to a true value then MakeMaker's prompt function will -# always return the default without waiting for user input. -#export PERL_MM_USE_DEFAULT=1 - PERL ?= /usr/bin/perl PACKAGE = $(shell dh_listpackages) TMP = $(CURDIR)/debian/$(PACKAGE) -# Allow disabling build optimisation by setting noopt in -# $DEB_BUILD_OPTIONS -CFLAGS = -Wall -g -ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS))) -CFLAGS += -O0 -else -CFLAGS += -O2 -endif +%: + dh $@ -build: build-stamp -build-stamp: - dh_testdir +override_dh_auto_build: # The following is pasted from an interactive session, to better understand what is echoed to Makefile.PL. # Add commands to compile the package here @@ -44,23 +25,18 @@ # Directory for the acebrowser CGI scripts (~username ok): [/usr/local/apache/cgi-bin/ace] # Directory does not exist. Shall I create it for you? [y] # Directory for the acebrowser HTML files and images (~username ok): [/usr/local/apache/htdocs/ace] - perl -e "print qq(3\ny\n$(CURDIR)/debian/libace-perl/etc/libace-perl\ny\n$(CURDIR)/debian/libace-perl/usr/lib/cgi-bin\ny\n$(CURDIR)/debian/libace-perl/usr/share/libace-perl)" | $(PERL) Makefile.PL INSTALLDIRS=vendor + perl -e "print qq(3\ny\n$(CURDIR)/debian/$(PACKAGE)/etc/libace-perl\ny\n$(CURDIR)/debian/$(PACKAGE)/usr/lib/cgi-bin\ny\n$(CURDIR)/debian/$(PACKAGE)/usr/share/$(PACKAGE))" | $(PERL) Makefile.PL INSTALLDIRS=vendor $(MAKE) OPTIMIZE="$(CFLAGS)" LD_RUN_PATH="" + +override_dh_auto_test: # Disabled as they need internet access. - # $(MAKE) test - touch $@ -clean: +override_dh_clean: [ ! -f Makefile ] || $(MAKE) realclean $(RM) --recursive docs/Ace - dh_clean build-stamp install-stamp .docs Ace/Browser/LocalSiteDefs.pm docs/Ace.html pod2htmd.tmp pod2htmi.tmp util/ace.pl util/install.pl - dh clean + dh_clean .docs Ace/B
[med-svn] r15037 - in trunk/packages/libace-perl/trunk/debian: . source
Author: tille
Date: 2013-10-29 10:08:53 + (Tue, 29 Oct 2013)
New Revision: 15037
Added:
trunk/packages/libace-perl/trunk/debian/source/
trunk/packages/libace-perl/trunk/debian/source/format
Modified:
trunk/packages/libace-perl/trunk/debian/changelog
trunk/packages/libace-perl/trunk/debian/compat
trunk/packages/libace-perl/trunk/debian/control
Log:
Usual packaging updates
Modified: trunk/packages/libace-perl/trunk/debian/changelog
===
--- trunk/packages/libace-perl/trunk/debian/changelog 2013-10-28 17:12:20 UTC
(rev 15036)
+++ trunk/packages/libace-perl/trunk/debian/changelog 2013-10-29 10:08:53 UTC
(rev 15037)
@@ -1,3 +1,14 @@
+libace-perl (1.92-3) UNRELEASED; urgency=low
+
+ * debian/source/format: 3.0 (quilt)
+ * debian/control:
+ - added myself to Uploaders
+ - cme fix dpkg-control
+ - debhelper 9
+ - canonical Vcs fields
+
+ -- Andreas Tille Tue, 29 Oct 2013 11:08:14 +0100
+
libace-perl (1.92-2) unstable; urgency=low
* debian/rules
Modified: trunk/packages/libace-perl/trunk/debian/compat
===
--- trunk/packages/libace-perl/trunk/debian/compat 2013-10-28 17:12:20 UTC
(rev 15036)
+++ trunk/packages/libace-perl/trunk/debian/compat 2013-10-29 10:08:53 UTC
(rev 15037)
@@ -1 +1 @@
-7
+9
Modified: trunk/packages/libace-perl/trunk/debian/control
===
--- trunk/packages/libace-perl/trunk/debian/control 2013-10-28 17:12:20 UTC
(rev 15036)
+++ trunk/packages/libace-perl/trunk/debian/control 2013-10-29 10:08:53 UTC
(rev 15037)
@@ -1,18 +1,21 @@
Source: libace-perl
+Maintainer: Debian Med Packaging Team
+Uploaders: Charles Plessy ,
+ Andreas Tille
Section: perl
Priority: optional
-Build-Depends: debhelper (>= 7)
-Maintainer: Debian Med Packaging Team
-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy
-Standards-Version: 3.8.2
-Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/libace-perl/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/libace-perl/trunk/
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.4
+Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/libace-perl/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/libace-perl/trunk/
Homepage: http://search.cpan.org/dist/AcePerl/
Package: libace-perl
Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends},
libcache-cache-perl
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ ${perl:Depends},
+ libcache-cache-perl
Description: Object-Oriented Access to ACEDB Databases
AcePerl is an object-oriented Perl interface for the AceDB
database. It provides functionality for connecting to remote AceDB
Added: trunk/packages/libace-perl/trunk/debian/source/format
===
--- trunk/packages/libace-perl/trunk/debian/source/format
(rev 0)
+++ trunk/packages/libace-perl/trunk/debian/source/format 2013-10-29
10:08:53 UTC (rev 15037)
@@ -0,0 +1 @@
+3.0 (quilt)
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