[med-svn] r16571 - trunk/packages/gwyddion/trunk/debian
Author: beathovn-guest Date: 2014-04-04 19:56:22 + (Fri, 04 Apr 2014) New Revision: 16571 Modified: trunk/packages/gwyddion/trunk/debian/changelog Log: New upstream version 2.36 uploaded. Modified: trunk/packages/gwyddion/trunk/debian/changelog === --- trunk/packages/gwyddion/trunk/debian/changelog 2014-04-04 17:33:46 UTC (rev 16570) +++ trunk/packages/gwyddion/trunk/debian/changelog 2014-04-04 19:56:22 UTC (rev 16571) @@ -1,3 +1,9 @@ +gwyddion (2.36-1) unstable; urgency=medium + + * New upstream release + + -- Jan Beyer Fri, 04 Apr 2014 21:41:17 +0200 + gwyddion (2.35-1) unstable; urgency=medium * New upstream release ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r16570 - trunk/packages/vcftools/trunk/debian
Author: alteholz Date: 2014-04-04 17:33:46 + (Fri, 04 Apr 2014) New Revision: 16570 Modified: trunk/packages/vcftools/trunk/debian/rules Log: do not use debug prints Modified: trunk/packages/vcftools/trunk/debian/rules === --- trunk/packages/vcftools/trunk/debian/rules 2014-04-04 17:26:10 UTC (rev 16569) +++ trunk/packages/vcftools/trunk/debian/rules 2014-04-04 17:33:46 UTC (rev 16570) @@ -7,11 +7,6 @@ %: dh $@ -override_dh_auto_build: - echo "hier bin ich" - MAKEFLAGS="" echo MAKEFLAGS is $(MAKEFLAGS) - MAKEFLAGS="" make - override_dh_clean: dh_clean # [ -r Makefile ] && make clean ? ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r16569 - in trunk/packages/vcftools/trunk/debian: . patches
Author: alteholz Date: 2014-04-04 17:26:10 + (Fri, 04 Apr 2014) New Revision: 16569 Modified: trunk/packages/vcftools/trunk/debian/changelog trunk/packages/vcftools/trunk/debian/control trunk/packages/vcftools/trunk/debian/patches/make.patch trunk/packages/vcftools/trunk/debian/rules trunk/packages/vcftools/trunk/debian/vcftools.lintian-overrides Log: new upstream version Modified: trunk/packages/vcftools/trunk/debian/changelog === --- trunk/packages/vcftools/trunk/debian/changelog 2014-04-04 16:33:47 UTC (rev 16568) +++ trunk/packages/vcftools/trunk/debian/changelog 2014-04-04 17:26:10 UTC (rev 16569) @@ -1,3 +1,10 @@ +vcftools (0.1.12+dfsg-1) unstable; urgency=low + + * new upstream version + * debian/control: standard bumped to 3.9.5 (no changes) + + -- Thorsten Alteholz Fri, 04 Apr 2014 18:00:00 +0200 + vcftools (0.1.11+dfsg-1) unstable; urgency=low * new upstream version Modified: trunk/packages/vcftools/trunk/debian/control === --- trunk/packages/vcftools/trunk/debian/control2014-04-04 16:33:47 UTC (rev 16568) +++ trunk/packages/vcftools/trunk/debian/control2014-04-04 17:26:10 UTC (rev 16569) @@ -2,7 +2,7 @@ Section: science Priority: extra Build-Depends: debhelper (>= 9), zlib1g-dev -Standards-Version: 3.9.4 +Standards-Version: 3.9.5 Homepage: http://vcftools.sourceforge.net Maintainer: Debian Med Packaging Team Uploaders: Thorsten Alteholz , Modified: trunk/packages/vcftools/trunk/debian/patches/make.patch === --- trunk/packages/vcftools/trunk/debian/patches/make.patch 2014-04-04 16:33:47 UTC (rev 16568) +++ trunk/packages/vcftools/trunk/debian/patches/make.patch 2014-04-04 17:26:10 UTC (rev 16569) @@ -1,15 +1,18 @@ -Description: do not use MAKEFLAGS +Description: do not use MAKEFLAGS and not MANDIR Author: Thorsten Alteholz -Last-Update: 2011-07-03 -Index: vcftools-0.1.7/Makefile +Last-Update: 2014-04-03 +Index: vcftools_0.1.12/Makefile === vcftools_0.1.7.org/Makefile2011-07-04 15:22:33.0 +0200 -+++ vcftools_0.1.7/Makefile2011-07-04 15:22:56.0 +0200 -@@ -22,7 +22,7 @@ +--- vcftools_0.1.12.orig/Makefile 2014-04-04 10:37:59.0 +0200 vcftools_0.1.12/Makefile 2014-04-04 10:38:34.0 +0200 +@@ -25,9 +25,8 @@ + DIRS = cpp perl install: - @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \ +- @mkdir -p $(BINDIR); mkdir -p $(MODDIR); mkdir -p $(MANDIR); \ +- cp ${PREFIX}/cpp/vcftools.1.gz $(MANDIR); \ -for dir in $(DIRS); do cd $$dir && $(MAKE) $(MAKEFLAGS) && cd ..; done ++ @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \ +for dir in $(DIRS); do cd $$dir && $(MAKE) && cd ..; done clean: Modified: trunk/packages/vcftools/trunk/debian/rules === --- trunk/packages/vcftools/trunk/debian/rules 2014-04-04 16:33:47 UTC (rev 16568) +++ trunk/packages/vcftools/trunk/debian/rules 2014-04-04 17:26:10 UTC (rev 16569) @@ -2,11 +2,16 @@ # -*- makefile -*- # Uncomment this to turn on verbose mode. -# export DH_VERBOSE=1 +export DH_VERBOSE=1 %: dh $@ +override_dh_auto_build: + echo "hier bin ich" + MAKEFLAGS="" echo MAKEFLAGS is $(MAKEFLAGS) + MAKEFLAGS="" make + override_dh_clean: dh_clean # [ -r Makefile ] && make clean ? Modified: trunk/packages/vcftools/trunk/debian/vcftools.lintian-overrides === --- trunk/packages/vcftools/trunk/debian/vcftools.lintian-overrides 2014-04-04 16:33:47 UTC (rev 16568) +++ trunk/packages/vcftools/trunk/debian/vcftools.lintian-overrides 2014-04-04 17:26:10 UTC (rev 16569) @@ -1,4 +1,5 @@ # the compiler flags are used vcftools: hardening-no-fortify-functions usr/bin/vcftools # this string does not appear in sources, it is just some binary blob -vcftools: spelling-error-in-binary usr/bin/vcftools teH the +# fixed upstream in 0.1.12 +#vcftools: spelling-error-in-binary usr/bin/vcftools teH the ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r16568 - trunk/packages/vtk-dicom/trunk/debian
Author: malat Date: 2014-04-04 16:33:47 + (Fri, 04 Apr 2014) New Revision: 16568 Modified: trunk/packages/vtk-dicom/trunk/debian/control Log: specify minimal version Modified: trunk/packages/vtk-dicom/trunk/debian/control === --- trunk/packages/vtk-dicom/trunk/debian/control 2014-04-04 16:04:39 UTC (rev 16567) +++ trunk/packages/vtk-dicom/trunk/debian/control 2014-04-04 16:33:47 UTC (rev 16568) @@ -2,7 +2,7 @@ Section: graphics Priority: optional Maintainer: Mathieu Malaterre -Build-Depends: debhelper (>= 9), cmake, libvtk5-dev, libgdcm2-dev, libdcmtk-dev, help2man +Build-Depends: debhelper (>= 9), cmake, libvtk5-dev (>= 5.8), libgdcm2-dev, libdcmtk-dev, help2man Homepage: http://github.com/dgobbi/vtk-dicom/ Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/vtk-dicom/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/vtk-dicom/trunk ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r16566 - in trunk/packages/insighttoolkit/branches/3.20.1/debian: . patches
Author: malat Date: 2014-04-04 15:54:45 + (Fri, 04 Apr 2014) New Revision: 16566 Added: trunk/packages/insighttoolkit/branches/3.20.1/debian/patches/snan-sanity.patch Modified: trunk/packages/insighttoolkit/branches/3.20.1/debian/changelog trunk/packages/insighttoolkit/branches/3.20.1/debian/control trunk/packages/insighttoolkit/branches/3.20.1/debian/control.in trunk/packages/insighttoolkit/branches/3.20.1/debian/patches/series Log: Prepare next upload Modified: trunk/packages/insighttoolkit/branches/3.20.1/debian/changelog === --- trunk/packages/insighttoolkit/branches/3.20.1/debian/changelog 2014-04-04 15:39:26 UTC (rev 16565) +++ trunk/packages/insighttoolkit/branches/3.20.1/debian/changelog 2014-04-04 15:54:45 UTC (rev 16566) @@ -1,3 +1,12 @@ +insighttoolkit (3.20.1+git20120521-5) unstable; urgency=low + + * Team upload + * d/c.in: moving libfftw3-dev from Recommends to Depends +for libinsighttoolkit3-dev (Closes: #740628) + * Cherry-picked snan-sanity.patch from ubuntu (Closes: #740705) + + -- Gianfranco Costamagna Sun, 09 Mar 2014 07:41:21 +0100 + insighttoolkit (3.20.1+git20120521-4) unstable; urgency=low * Use dch/9 to get hardening flags correct Modified: trunk/packages/insighttoolkit/branches/3.20.1/debian/control === --- trunk/packages/insighttoolkit/branches/3.20.1/debian/control 2014-04-04 15:39:26 UTC (rev 16565) +++ trunk/packages/insighttoolkit/branches/3.20.1/debian/control 2014-04-04 15:54:45 UTC (rev 16566) @@ -34,8 +34,8 @@ Package: libinsighttoolkit3-dev Section: libdevel Architecture: any -Depends: ${misc:Depends}, libinsighttoolkit3.20 (= ${binary:Version}), libgdcm2-dev -Recommends: libfftw3-dev, uuid-dev +Depends: ${misc:Depends}, libinsighttoolkit3.20 (= ${binary:Version}), libgdcm2-dev, libfftw3-dev +Recommends: uuid-dev Conflicts: libinsighttoolkit-dev Replaces: libinsighttoolkit-dev Suggests: insighttoolkit3-examples Modified: trunk/packages/insighttoolkit/branches/3.20.1/debian/control.in === --- trunk/packages/insighttoolkit/branches/3.20.1/debian/control.in 2014-04-04 15:39:26 UTC (rev 16565) +++ trunk/packages/insighttoolkit/branches/3.20.1/debian/control.in 2014-04-04 15:54:45 UTC (rev 16566) @@ -34,8 +34,8 @@ Package: libinsighttoolkit@VER_MAJOR@-dev Section: libdevel Architecture: any -Depends: ${misc:Depends}, libinsighttoolkit@SOVERSION@ (= ${binary:Version}), libgdcm2-dev -Recommends: libfftw3-dev, uuid-dev +Depends: ${misc:Depends}, libinsighttoolkit@SOVERSION@ (= ${binary:Version}), libgdcm2-dev, libfftw3-dev +Recommends: uuid-dev Conflicts: libinsighttoolkit-dev Replaces: libinsighttoolkit-dev Suggests: insighttoolkit@VER_MAJOR@-examples Modified: trunk/packages/insighttoolkit/branches/3.20.1/debian/patches/series === --- trunk/packages/insighttoolkit/branches/3.20.1/debian/patches/series 2014-04-04 15:39:26 UTC (rev 16565) +++ trunk/packages/insighttoolkit/branches/3.20.1/debian/patches/series 2014-04-04 15:54:45 UTC (rev 16566) @@ -15,3 +15,4 @@ bug667417.patch nan-i386.patch #tiff5.patch +snan-sanity.patch Added: trunk/packages/insighttoolkit/branches/3.20.1/debian/patches/snan-sanity.patch === --- trunk/packages/insighttoolkit/branches/3.20.1/debian/patches/snan-sanity.patch (rev 0) +++ trunk/packages/insighttoolkit/branches/3.20.1/debian/patches/snan-sanity.patch 2014-04-04 15:54:45 UTC (rev 16566) @@ -0,0 +1,17 @@ +Index: insighttoolkit-3.20.1+git20120521/Utilities/NrrdIO/sane.c +=== +--- insighttoolkit-3.20.1+git20120521.orig/Utilities/NrrdIO/sane.c 2012-09-11 17:25:06.0 + insighttoolkit-3.20.1+git20120521/Utilities/NrrdIO/sane.c 2012-09-11 17:39:19.196189762 + +@@ -115,7 +115,11 @@ + ( defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 7 ))) + /* don't compare airFP_SNAN */ + #else +- && airFP_SNAN == airFPClass_f(AIR_SNAN) ++ /* we don't bother checking for ++airFP_SNAN == airFPClass_f(AIR_SNAN) because ++the signal-ness of the NaN is not preserved in ++float conversion */ ++ /* && airFP_SNAN == airFPClass_f(AIR_SNAN) */ + #endif + && airFP_QNAN == airFPClass_d(AIR_NAN) + && airFP_QNAN == airFPClass_d(AIR_QNAN) )) { ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r16565 - trunk/packages/vtk-dicom/trunk/debian
Author: malat Date: 2014-04-04 15:39:26 + (Fri, 04 Apr 2014) New Revision: 16565 Modified: trunk/packages/vtk-dicom/trunk/debian/control trunk/packages/vtk-dicom/trunk/debian/rules Log: update version, fix lintian Modified: trunk/packages/vtk-dicom/trunk/debian/control === --- trunk/packages/vtk-dicom/trunk/debian/control 2014-04-04 15:24:27 UTC (rev 16564) +++ trunk/packages/vtk-dicom/trunk/debian/control 2014-04-04 15:39:26 UTC (rev 16565) @@ -12,6 +12,7 @@ Section: libdevel Architecture: any Depends: ${misc:Depends}, libvtk-dicom0.4 (= ${binary:Version}) +Pre-Depends: ${misc:Pre-Depends} Description: DICOM for VTK - dev This package contains a set of classes for managing DICOM files and metadata from within VTK, and some utility programs Modified: trunk/packages/vtk-dicom/trunk/debian/rules === --- trunk/packages/vtk-dicom/trunk/debian/rules 2014-04-04 15:24:27 UTC (rev 16564) +++ trunk/packages/vtk-dicom/trunk/debian/rules 2014-04-04 15:39:26 UTC (rev 16565) @@ -19,7 +19,7 @@ override_dh_auto_configure: dh_auto_configure -- $(CMAKE_EXTRA_FLAGS) -VERSION=0.4.2 +VERSION=$(shell dpkg-parsechangelog | grep '^Version' | cut -d' ' -f2 | cut -f1 -d- | cut -f2 -d~) SOVERSION=0.4 pkg_lib = libvtk-dicom$(SOVERSION) pkg_dev = libvtk-dicom$(SOVERSION)-dev ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r16564 - trunk/packages/vtk-dicom/trunk/debian
Author: malat Date: 2014-04-04 15:24:27 + (Fri, 04 Apr 2014) New Revision: 16564 Removed: trunk/packages/vtk-dicom/trunk/debian/patches/ Modified: trunk/packages/vtk-dicom/trunk/debian/changelog Log: prepare 0.4.4 Modified: trunk/packages/vtk-dicom/trunk/debian/changelog === --- trunk/packages/vtk-dicom/trunk/debian/changelog 2014-04-04 15:21:15 UTC (rev 16563) +++ trunk/packages/vtk-dicom/trunk/debian/changelog 2014-04-04 15:24:27 UTC (rev 16564) @@ -1,3 +1,11 @@ +vtk-dicom (0.4.4-1) unstable; urgency=low + + * New upstream. +- remove patch applied upstream: d/p/missingstuff.patch + * Upload to sid not that ABI is stable. + + -- Mathieu Malaterre Fri, 04 Apr 2014 17:19:25 +0200 + vtk-dicom (0.4.3-1) experimental; urgency=low * Initial release. (Closes: #742217) ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r16563 - trunk/packages/vtk-dicom/trunk/debian/patches
Author: malat Date: 2014-04-04 15:21:15 + (Fri, 04 Apr 2014) New Revision: 16563 Modified: trunk/packages/vtk-dicom/trunk/debian/patches/missingstuff.patch Log: cleanup patch Modified: trunk/packages/vtk-dicom/trunk/debian/patches/missingstuff.patch === --- trunk/packages/vtk-dicom/trunk/debian/patches/missingstuff.patch 2014-04-02 20:13:14 UTC (rev 16562) +++ trunk/packages/vtk-dicom/trunk/debian/patches/missingstuff.patch 2014-04-04 15:21:15 UTC (rev 16563) @@ -1,29 +1,8 @@ -Description: - TODO: Put a short summary on the line above and replace this paragraph - with a longer explanation of this change. Complete the meta-information - with other relevant fields (see below for details). To make it easier, the - information below has been extracted from the changelog. Adjust it or drop - it. - . - vtk-dicom (0.4.2-1) unstable; urgency=low - . - * Initial release. (Closes: #742217) +Description: Make sure to not use transitive linking Author: Mathieu Malaterre Bug-Debian: http://bugs.debian.org/742217 +Forwarded: https://github.com/dgobbi/vtk-dicom/issues/9 -The information above should follow the Patch Tagging Guidelines, please -checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here -are templates for supplementary fields that you might want to add: - -Origin: , -Bug: -Bug-Debian: http://bugs.debian.org/ -Bug-Ubuntu: https://launchpad.net/bugs/ -Forwarded: -Reviewed-By: -Last-Update: - Index: vtk-dicom-0.4.3/Examples/CMakeLists.txt === --- vtk-dicom-0.4.3.orig/Examples/CMakeLists.txt 2014-03-24 12:24:54.702069811 +0100 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [probabel] branch pristine-tar updated (402f0ab -> f62b4e4)
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch pristine-tar in repository probabel. from 402f0ab pristine-tar data for probabel_0.4.2.orig.tar.gz new f62b4e4 pristine-tar data for probabel_0.4.3.orig.tar.gz The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: probabel_0.4.3.orig.tar.gz.delta | Bin 0 -> 6460 bytes probabel_0.4.3.orig.tar.gz.id| 1 + 2 files changed, 1 insertion(+) create mode 100644 probabel_0.4.3.orig.tar.gz.delta create mode 100644 probabel_0.4.3.orig.tar.gz.id -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/probabel.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [probabel] 01/01: pristine-tar data for probabel_0.4.3.orig.tar.gz
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository probabel. commit f62b4e48c6557a53779b4af2fc2e76c63108df6c Author: Andreas Tille Date: Fri Apr 4 10:32:35 2014 +0200 pristine-tar data for probabel_0.4.3.orig.tar.gz --- probabel_0.4.3.orig.tar.gz.delta | Bin 0 -> 6460 bytes probabel_0.4.3.orig.tar.gz.id| 1 + 2 files changed, 1 insertion(+) diff --git a/probabel_0.4.3.orig.tar.gz.delta b/probabel_0.4.3.orig.tar.gz.delta new file mode 100644 index 000..da557d8 Binary files /dev/null and b/probabel_0.4.3.orig.tar.gz.delta differ diff --git a/probabel_0.4.3.orig.tar.gz.id b/probabel_0.4.3.orig.tar.gz.id new file mode 100644 index 000..37c4b7e --- /dev/null +++ b/probabel_0.4.3.orig.tar.gz.id @@ -0,0 +1 @@ +6487c99ce89678fc7d130a61e5cfe63dadc53212 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/probabel.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [probabel] tag debian/0.4.3-1 created (now 17bdeed)
This is an automated email from the git hooks/post-receive script. tille pushed a change to tag debian/0.4.3-1 in repository probabel. at 17bdeed (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/probabel.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [probabel] branch master updated (462330b -> 17bdeed)
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository probabel. from 462330b Changed from 'any' architecture to only the little-endian ones, because the binary data format used by ProbABEL only works on those archs. new 17bdeed Upload to unstable The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: debian/changelog | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/probabel.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [probabel] 01/01: Upload to unstable
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository probabel. commit 17bdeedb59ed88dc58cafff0778972a24ce58c46 Author: Andreas Tille Date: Fri Apr 4 10:43:14 2014 +0200 Upload to unstable --- debian/changelog | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/debian/changelog b/debian/changelog index 4da02a4..ecb1bc4 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,4 +1,4 @@ -probabel (0.4.3-1) UNRELEASED; urgency=low +probabel (0.4.3-1) unstable; urgency=low [ L.C. Karssen ] * New upstream release fixing two bugs and speeding up analysis in -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/probabel.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [probabel] branch upstream updated (7b2d0e3 -> 80a055f)
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch upstream in repository probabel. from 7b2d0e3 Imported Upstream version 0.4.2 new 80a055f Imported Upstream version 0.4.3 The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: checks/R-tests/Makefile.am |5 + checks/R-tests/Makefile.in |3 +- checks/R-tests/run_models_in_R_pacox.R |5 +- checks/run_diff.sh |2 +- configure | 20 +- configure.ac |4 +- doc/ChangeLog | 12 +- doc/INSTALL|3 + doc/Makefile.in|4 +- doc/ProbABEL_manual.tex| 225 ++- doc/pacoxph.1 |2 +- doc/palinear.1 |2 +- doc/palogist.1 |2 +- doc/probabel.1 |2 +- doc/probabel.pl.1 |2 +- src/Makefile.in| 1005 +++- src/command_line_settings.cpp | 21 + src/command_line_settings.h| 21 + src/coxph_data.cpp | 22 + src/coxph_data.h | 21 + src/data.cpp | 23 + src/data.h | 21 + src/eigen_mematrix.cpp | 32 +- src/eigen_mematrix.h | 23 + src/gendata.cpp| 39 +- src/gendata.h | 21 + src/main.cpp | 24 + src/main_functions_dump.cpp| 20 + src/main_functions_dump.h | 21 + src/maskedmatrix.cpp | 21 + src/maskedmatrix.h | 21 + src/mematri1.h | 23 + src/mematrix.h | 23 + src/phedata.cpp| 23 + src/phedata.h | 21 + src/reg1.cpp | 34 +- src/reg1.h | 24 + src/regdata.cpp| 22 + src/regdata.h | 21 + src/usage.cpp | 27 +- src/usage.h| 21 + src/utilities.cpp | 22 + src/utilities.h| 21 + 43 files changed, 1342 insertions(+), 589 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/probabel.git ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit