[med-svn] [Git][med-team/plink1-9] Pushed new tag upstream/1.90_b6.11-191024
Dylan Aïssi pushed new tag upstream/1.90_b6.11-191024 at Debian Med / plink1.9 -- View it on GitLab: https://salsa.debian.org/med-team/plink1-9/tree/upstream/1.90_b6.11-191024 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/plink1-9][master] 3 commits: Update d/changelog
Dylan Aïssi pushed to branch master at Debian Med / plink1.9 Commits: 9051d029 by Dylan Aïssi at 2019-10-25T20:45:39Z Update d/changelog - - - - - e4922ac1 by Dylan Aïssi at 2019-10-25T20:49:21Z Bump Standards-Version: 4.4.1 (no changes needed) - - - - - fbe64063 by Dylan Aïssi at 2019-10-25T20:51:57Z Update upstream changelog - - - - - 3 changed files: - debian/changelog - debian/control - debian/upstream.docs/upstream.changelog Changes: = debian/changelog = @@ -1,3 +1,10 @@ +plink1.9 (1.90~b6.11-191024-1) UNRELEASED; urgency=medium + + * New upstream release. + * Bump Standards-Version: 4.4.1 (no changes needed). + + -- Dylan Aïssi Fri, 25 Oct 2019 22:44:47 +0200 + plink1.9 (1.90~b6.10-190617-1) unstable; urgency=medium * New upstream release. = debian/control = @@ -8,7 +8,7 @@ Build-Depends: debhelper (>= 12~), libatlas-base-dev, liblapack-dev, zlib1g-dev -Standards-Version: 4.4.0 +Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/plink1-9 Vcs-Git: https://salsa.debian.org/med-team/plink1-9.git Homepage: https://www.cog-genomics.org/plink/1.9/ = debian/upstream.docs/upstream.changelog = @@ -1,6 +1,8 @@ # Copy/Paste from https://www.cog-genomics.org/plink/1.9/ -17 Jun 2019: --loop-assoc now works properly when the original .fam file has missing phenotype values. +24 Oct 2019: Fixed uninitialized-variable bug in --dosage + --q-score-range. "--indep-pairwise 500kb ..." works properly again (the previous build required a space before the 'kb'). + +17 Jun: --loop-assoc now works properly when the original .fam file has missing phenotype values. 4 Mar: Brackets in command-line help text are now used in a manner more similar to other tools. --tests now works properly when a numeric argument is 1 past the end. View it on GitLab: https://salsa.debian.org/med-team/plink1-9/compare/533ce8fce2d14baf30c637ce8af00922faec0b26...fbe640633651f19647e450d76e1c2360ee79b58d -- View it on GitLab: https://salsa.debian.org/med-team/plink1-9/compare/533ce8fce2d14baf30c637ce8af00922faec0b26...fbe640633651f19647e450d76e1c2360ee79b58d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/plink1-9] Pushed new tag debian/1.90_b6.11-191024-1
Dylan Aïssi pushed new tag debian/1.90_b6.11-191024-1 at Debian Med / plink1.9 -- View it on GitLab: https://salsa.debian.org/med-team/plink1-9/tree/debian/1.90_b6.11-191024-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/plink1-9][master] Upload to unstable
Dylan Aïssi pushed to branch master at Debian Med / plink1.9 Commits: 15669831 by Dylan Aïssi at 2019-10-25T20:53:37Z Upload to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = @@ -1,9 +1,9 @@ -plink1.9 (1.90~b6.11-191024-1) UNRELEASED; urgency=medium +plink1.9 (1.90~b6.11-191024-1) unstable; urgency=medium * New upstream release. * Bump Standards-Version: 4.4.1 (no changes needed). - -- Dylan Aïssi Fri, 25 Oct 2019 22:44:47 +0200 + -- Dylan Aïssi Fri, 25 Oct 2019 22:53:20 +0200 plink1.9 (1.90~b6.10-190617-1) unstable; urgency=medium View it on GitLab: https://salsa.debian.org/med-team/plink1-9/commit/15669831b65e22be16ffdeae62e2dd2da7e89d1f -- View it on GitLab: https://salsa.debian.org/med-team/plink1-9/commit/15669831b65e22be16ffdeae62e2dd2da7e89d1f You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/plink1-9][pristine-tar] pristine-tar data for plink1.9_1.90~b6.11-191024.orig.tar.xz
Dylan Aïssi pushed to branch pristine-tar at Debian Med / plink1.9 Commits: b2761802 by Dylan Aïssi at 2019-10-25T20:41:13Z pristine-tar data for plink1.9_1.90~b6.11-191024.orig.tar.xz - - - - - 2 changed files: - + plink1.9_1.90~b6.11-191024.orig.tar.xz.delta - + plink1.9_1.90~b6.11-191024.orig.tar.xz.id Changes: = plink1.9_1.90~b6.11-191024.orig.tar.xz.delta = Binary files /dev/null and b/plink1.9_1.90~b6.11-191024.orig.tar.xz.delta differ = plink1.9_1.90~b6.11-191024.orig.tar.xz.id = @@ -0,0 +1 @@ +c2a0af24724e8c9b03de1dff6b9f6f7c27c1edf4 View it on GitLab: https://salsa.debian.org/med-team/plink1-9/commit/b2761802f042e593f5ba4b46ab7927534812d229 -- View it on GitLab: https://salsa.debian.org/med-team/plink1-9/commit/b2761802f042e593f5ba4b46ab7927534812d229 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mypy][master] 4 commits: demote mips64el as well
Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: bdd8d891 by Michael R. Crusoe at 2019-10-25T16:21:46Z demote mips64el as well - - - - - 8b68dad7 by Michael R. Crusoe at 2019-10-25T16:23:12Z risc64 → riscv64 - - - - - 1edfbda2 by Michael R. Crusoe at 2019-10-25T16:25:31Z SH4 still is OOM at -O1, drop to -O0 - - - - - 89625663 by Michael R. Crusoe at 2019-10-25T16:26:34Z release 0.740-4 - - - - - 2 changed files: - debian/changelog - debian/rules Changes: = debian/changelog = @@ -1,10 +1,11 @@ -mypy (0.740-4) UNRELEASED; urgency=medium +mypy (0.740-4) unstable; urgency=medium - * Poor mipsel, can't handle -O2 either. PowerPC and ia64 both have + * Poor mipsel & mipsel64, can't handle -O2 either. PowerPC and ia64 both have "Error: operand out of range" errors, so drop each of them another -O level -to see if that helps at all. +to see if that helps at all. SH4 still is OOM at -O1, drop to -O0. + * typo fix: risc64 → riscv64 - -- Michael R. Crusoe Fri, 25 Oct 2019 17:39:41 +0200 + -- Michael R. Crusoe Fri, 25 Oct 2019 18:26:10 +0200 mypy (0.740-3) unstable; urgency=medium = debian/rules = @@ -14,11 +14,11 @@ endif export DEB_BUILD_MAINT_OPTIONS=hardening=+all include /usr/share/dpkg/default.mk -ifneq (,$(filter $(DEB_HOST_ARCH),armhf mips64el risc64)) +ifneq (,$(filter $(DEB_HOST_ARCH),armhf riscv64)) export MYPYC_OPT_LEVEL=2 -else ifneq (,$(filter $(DEB_HOST_ARCH),armel mipsel alpha ia64 m68k sh4)) +else ifneq (,$(filter $(DEB_HOST_ARCH),armel mips64el mipsel alpha ia64 m68k)) export MYPYC_OPT_LEVEL=1 -else ifneq (,$(filter $(DEB_HOST_ARCH),powerpc)) +else ifneq (,$(filter $(DEB_HOST_ARCH),powerpc sh4)) export MYPYC_OPT_LEVEL=0 endif View it on GitLab: https://salsa.debian.org/med-team/mypy/compare/58280ea828e58cb4ca98c5116c183ab193f3cf8d...89625663068a6209ac4e61179c0254cca71e9107 -- View it on GitLab: https://salsa.debian.org/med-team/mypy/compare/58280ea828e58cb4ca98c5116c183ab193f3cf8d...89625663068a6209ac4e61179c0254cca71e9107 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mypy] Pushed new tag debian/0.740-4
Michael R. Crusoe pushed new tag debian/0.740-4 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/tree/debian/0.740-4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mypy][master] more arch optimization reductions
Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: 58280ea8 by Michael R. Crusoe at 2019-10-25T16:14:10Z more arch optimization reductions - - - - - 2 changed files: - debian/changelog - debian/rules Changes: = debian/changelog = @@ -1,3 +1,11 @@ +mypy (0.740-4) UNRELEASED; urgency=medium + + * Poor mipsel, can't handle -O2 either. PowerPC and ia64 both have +"Error: operand out of range" errors, so drop each of them another -O level +to see if that helps at all. + + -- Michael R. Crusoe Fri, 25 Oct 2019 17:39:41 +0200 + mypy (0.740-3) unstable; urgency=medium * Further lower package build time optimization for armhf, armel, mips64el, = debian/rules = @@ -14,10 +14,12 @@ endif export DEB_BUILD_MAINT_OPTIONS=hardening=+all include /usr/share/dpkg/default.mk -ifneq (,$(filter $(DEB_HOST_ARCH),armhf mips64el mipsel ia64 risc64)) +ifneq (,$(filter $(DEB_HOST_ARCH),armhf mips64el risc64)) export MYPYC_OPT_LEVEL=2 -else ifneq (,$(filter $(DEB_HOST_ARCH),armel alpha m68k powerpc sh4)) +else ifneq (,$(filter $(DEB_HOST_ARCH),armel mipsel alpha ia64 m68k sh4)) export MYPYC_OPT_LEVEL=1 +else ifneq (,$(filter $(DEB_HOST_ARCH),powerpc)) + export MYPYC_OPT_LEVEL=0 endif %: View it on GitLab: https://salsa.debian.org/med-team/mypy/commit/58280ea828e58cb4ca98c5116c183ab193f3cf8d -- View it on GitLab: https://salsa.debian.org/med-team/mypy/commit/58280ea828e58cb4ca98c5116c183ab193f3cf8d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/megahit][master] Fix changelog email
Shayan Doust pushed to branch master at Debian Med / megahit Commits: d1522045 by Shayan Doust at 2019-10-22T12:48:27Z Fix changelog email - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = @@ -3,4 +3,4 @@ megahit (1.2.9-1) UNRELEASED; urgency=medium * Initial release (Closes: #) * New upstream release - -- Shayan Doust Tue, 22 Oct 2019 13:15:38 +0100 + -- Shayan Doust Tue, 22 Oct 2019 13:15:38 +0100 View it on GitLab: https://salsa.debian.org/med-team/megahit/commit/d1522045d81260f0d41ab8219fc1c945862f2f55 -- View it on GitLab: https://salsa.debian.org/med-team/megahit/commit/d1522045d81260f0d41ab8219fc1c945862f2f55 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/megahit] Pushed new tag upstream/1.2.9
Shayan Doust pushed new tag upstream/1.2.9 at Debian Med / megahit -- View it on GitLab: https://salsa.debian.org/med-team/megahit/tree/upstream/1.2.9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/megahit][pristine-tar] pristine-tar data for megahit_1.2.9.orig.tar.gz
Shayan Doust pushed to branch pristine-tar at Debian Med / megahit Commits: 5c7e6b87 by Shayan Doust at 2019-10-22T12:19:13Z pristine-tar data for megahit_1.2.9.orig.tar.gz - - - - - 2 changed files: - + megahit_1.2.9.orig.tar.gz.delta - + megahit_1.2.9.orig.tar.gz.id Changes: = megahit_1.2.9.orig.tar.gz.delta = Binary files /dev/null and b/megahit_1.2.9.orig.tar.gz.delta differ = megahit_1.2.9.orig.tar.gz.id = @@ -0,0 +1 @@ +a9d254ef46ab0ccba70e30180ac59c8784fe8a55 View it on GitLab: https://salsa.debian.org/med-team/megahit/commit/5c7e6b87f61163891f7f32bb40b6471cd50c801e -- View it on GitLab: https://salsa.debian.org/med-team/megahit/commit/5c7e6b87f61163891f7f32bb40b6471cd50c801e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mypy][master] 3 commits: lower package build time opt. for some archs
Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: f34c02da by Michael R. Crusoe at 2019-10-25T07:54:17Z lower package build time opt. for some archs - - - - - 34f553df by Michael R. Crusoe at 2019-10-25T07:56:27Z increase build verbosity - - - - - 4d3d4b7e by Michael R. Crusoe at 2019-10-25T12:05:40Z release - - - - - 4 changed files: - debian/changelog - debian/patches/series - + debian/patches/verbose - debian/rules Changes: = debian/changelog = @@ -1,3 +1,11 @@ +mypy (0.740-3) unstable; urgency=medium + + * Further lower package build time optimization for armhf, armel, mips64el, +mipsel, alpha, m68k, powerpc, risc64, and sh4 + * Increased the build verbosity + + -- Michael R. Crusoe Thu, 24 Oct 2019 21:27:32 +0200 + mypy (0.740-2) unstable; urgency=medium * Incorporate high quality hand written manual pages courtesy of = debian/patches/series = @@ -1,3 +1,4 @@ ignore_mypyc proper_plugin spelling +verbose = debian/patches/verbose = @@ -0,0 +1,12 @@ +Author: Michael R. Crusoe +Description: make the build more verbose +--- mypy.orig/setup.py mypy/setup.py +@@ -148,6 +148,7 @@ + # Use multi-file compliation mode on windows because without it + # our Appveyor builds run out of memory sometimes. + multi_file=sys.platform == 'win32' or force_multifile, ++verbose=True, + ) + cmdclass['build_ext'] = MypycifyBuildExt + else: = debian/rules = @@ -14,8 +14,10 @@ endif export DEB_BUILD_MAINT_OPTIONS=hardening=+all include /usr/share/dpkg/default.mk -ifneq (,$(filter $(DEB_HOST_ARCH),armel alpha m68k powerpc sh4)) +ifneq (,$(filter $(DEB_HOST_ARCH),armhf mips64el mipsel ia64 risc64)) export MYPYC_OPT_LEVEL=2 +else ifneq (,$(filter $(DEB_HOST_ARCH),armel alpha m68k powerpc sh4)) + export MYPYC_OPT_LEVEL=1 endif %: View it on GitLab: https://salsa.debian.org/med-team/mypy/compare/0122706b80b00cadb295a7de3d45aaa2d05d7c59...4d3d4b7eb7645b4201668dc786689260d5ab39cd -- View it on GitLab: https://salsa.debian.org/med-team/mypy/compare/0122706b80b00cadb295a7de3d45aaa2d05d7c59...4d3d4b7eb7645b4201668dc786689260d5ab39cd You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mypy] Pushed new tag debian/0.740-3
Michael R. Crusoe pushed new tag debian/0.740-3 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/tree/debian/0.740-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
