[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 5a5da912 by Andreas Tille at 2020-12-08T01:45:22+00:00 automatic update - - - - - 2 changed files: - debian-med-tests.txt - outdated_med-packages.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 07 Dec 2020 13:42:03 + +Last-Update: Tue, 08 Dec 2020 01:42:03 + Source| Vote | Tasks | Tags ---++-+-- = outdated_med-packages.txt = The diff for this file was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5a5da9122edf0a1b06b005489b361f613f150e76 -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5a5da9122edf0a1b06b005489b361f613f150e76 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/trimmomatic][master] Update metadata - update bio.tools
Steffen Möller pushed to branch master at Debian Med / trimmomatic Commits: ebc8e28e by Steffen Möller at 2020-12-07T23:31:35+00:00 Update metadata - update bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream/metadata = @@ -17,6 +17,6 @@ Registry: - Name: SciCrunch Entry: SCR_011848 - Name: bio.tools - Entry: Trimmomatic + Entry: trimmomatic - Name: conda:bioconda Entry: trimmomatic View it on GitLab: https://salsa.debian.org/med-team/trimmomatic/-/commit/ebc8e28eea2fb132c9807d1735ad3d134c5bb388 -- View it on GitLab: https://salsa.debian.org/med-team/trimmomatic/-/commit/ebc8e28eea2fb132c9807d1735ad3d134c5bb388 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/q2-demux][pristine-tar] pristine-tar data for q2-demux_2020.11.1.orig.tar.gz
Steffen Möller pushed to branch pristine-tar at Debian Med / q2-demux Commits: ebe03392 by Steffen Moeller at 2020-12-07T23:02:21+01:00 pristine-tar data for q2-demux_2020.11.1.orig.tar.gz - - - - - 2 changed files: - + q2-demux_2020.11.1.orig.tar.gz.delta - + q2-demux_2020.11.1.orig.tar.gz.id Changes: = q2-demux_2020.11.1.orig.tar.gz.delta = Binary files /dev/null and b/q2-demux_2020.11.1.orig.tar.gz.delta differ = q2-demux_2020.11.1.orig.tar.gz.id = @@ -0,0 +1 @@ +3cae112e938bc249923642359d1a197ab0f661a5 View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/commit/ebe03392aa051245acf4a7ddbaeba79c6da64ae7 -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/commit/ebe03392aa051245acf4a7ddbaeba79c6da64ae7 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/q2-demux] Pushed new tag upstream/2020.11.1
Steffen Möller pushed new tag upstream/2020.11.1 at Debian Med / q2-demux -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/tree/upstream/2020.11.1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/q2-demux] Pushed new tag debian/2020.11.1-1
Steffen Möller pushed new tag debian/2020.11.1-1 at Debian Med / q2-demux -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/tree/debian/2020.11.1-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/q2-demux][upstream] New upstream version 2020.11.1
Steffen Möller pushed to branch upstream at Debian Med / q2-demux
Commits:
509048dd by Steffen Moeller at 2020-12-07T23:02:20+01:00
New upstream version 2020.11.1
- - - - -
4 changed files:
- .gitignore
- Makefile
- − q2_demux/_summarize/assets/package-lock.json
- q2_demux/_version.py
Changes:
=
.gitignore
=
@@ -72,3 +72,4 @@ target/
.DS_Store
node_modules
+package-lock.json
=
Makefile
=
@@ -16,7 +16,7 @@ test-cov: all
q2_demux/_summarize/assets/dist:
cd q2_demux/_summarize/assets && \
- npm install && \
+ npm install --no-save && \
npm run build && \
cp licenses/* dist/
=
q2_demux/_summarize/assets/package-lock.json deleted
=
The diff for this file was not included because it is too large.
=
q2_demux/_version.py
=
@@ -23,9 +23,9 @@ def get_keywords():
# setup.py/versioneer.py will grep for the variable names, so they must
# each be defined on a line of their own. _version.py will just call
# get_keywords().
-git_refnames = " (HEAD -> master, tag: 2020.11.0)"
-git_full = "3d775a03bb152c30b2b0fd57b5f44a4c1d2f4273"
-git_date = "2020-11-25 17:13:07 +"
+git_refnames = " (HEAD -> master, tag: 2020.11.1)"
+git_full = "5769fc493a3a6479b2d648151fb1a10c8b1426fd"
+git_date = "2020-12-05 20:44:49 +"
keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
return keywords
View it on GitLab:
https://salsa.debian.org/med-team/q2-demux/-/commit/509048dd2bf836eced94ac442dd7bb702f7bd676
--
View it on GitLab:
https://salsa.debian.org/med-team/q2-demux/-/commit/509048dd2bf836eced94ac442dd7bb702f7bd676
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[med-svn] [Git][med-team/q2-demux][master] 5 commits: New upstream version 2020.11.1
Steffen Möller pushed to branch master at Debian Med / q2-demux
Commits:
509048dd by Steffen Moeller at 2020-12-07T23:02:20+01:00
New upstream version 2020.11.1
- - - - -
df9d1f7b by Steffen Moeller at 2020-12-07T23:02:20+01:00
routine-update: New upstream version
- - - - -
285fcffd by Steffen Moeller at 2020-12-07T23:02:21+01:00
Update upstream source from tag 'upstream/2020.11.1'
Update to upstream version '2020.11.1'
with Debian dir d1d035c1fd33d5ade8c4a994c58e7fd72d546502
- - - - -
a3941b69 by Steffen Moeller at 2020-12-07T23:02:23+01:00
Trim trailing whitespace.
Changes-By: lintian-brush
Fixes: lintian: trailing-whitespace
See-also: https://lintian.debian.org/tags/trailing-whitespace.html
- - - - -
9a1828ad by Steffen Moeller at 2020-12-07T23:02:53+01:00
routine-update: Ready to upload to unstable
- - - - -
6 changed files:
- .gitignore
- Makefile
- debian/changelog
- debian/rules
- − q2_demux/_summarize/assets/package-lock.json
- q2_demux/_version.py
Changes:
=
.gitignore
=
@@ -72,3 +72,4 @@ target/
.DS_Store
node_modules
+package-lock.json
=
Makefile
=
@@ -16,7 +16,7 @@ test-cov: all
q2_demux/_summarize/assets/dist:
cd q2_demux/_summarize/assets && \
- npm install && \
+ npm install --no-save && \
npm run build && \
cp licenses/* dist/
=
debian/changelog
=
@@ -1,3 +1,10 @@
+q2-demux (2020.11.1-1) unstable; urgency=medium
+
+ * New upstream version
+ * Trim trailing whitespace.
+
+ -- Steffen Moeller Mon, 07 Dec 2020 23:02:24 +0100
+
q2-demux (2020.11.0-1) unstable; urgency=medium
* New upstream version
=
debian/rules
=
@@ -24,4 +24,3 @@ endif
override_dh_auto_clean:
dh_auto_clean
rm -f q2_demux.egg-info/PKG-INFO q2_demux.egg-info/SOURCES.txt
q2_demux.egg-info/dependency_links.txt q2_demux.egg-info/entry_points.txt
q2_demux.egg-info/not-zip-safe q2_demux.egg-info/top_level.txt
-
=
q2_demux/_summarize/assets/package-lock.json deleted
=
The diff for this file was not included because it is too large.
=
q2_demux/_version.py
=
@@ -23,9 +23,9 @@ def get_keywords():
# setup.py/versioneer.py will grep for the variable names, so they must
# each be defined on a line of their own. _version.py will just call
# get_keywords().
-git_refnames = " (HEAD -> master, tag: 2020.11.0)"
-git_full = "3d775a03bb152c30b2b0fd57b5f44a4c1d2f4273"
-git_date = "2020-11-25 17:13:07 +"
+git_refnames = " (HEAD -> master, tag: 2020.11.1)"
+git_full = "5769fc493a3a6479b2d648151fb1a10c8b1426fd"
+git_date = "2020-12-05 20:44:49 +"
keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
return keywords
View it on GitLab:
https://salsa.debian.org/med-team/q2-demux/-/compare/b70e5adcd107ff2333aa3d58a4a23978d0be9a8f...9a1828adf7b9de81a76f9fb0191e904d4b3aa951
--
View it on GitLab:
https://salsa.debian.org/med-team/q2-demux/-/compare/b70e5adcd107ff2333aa3d58a4a23978d0be9a8f...9a1828adf7b9de81a76f9fb0191e904d4b3aa951
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[med-svn] [Git][med-team/glam2] Pushed new tag debian/1064-9
Andreas Tille pushed new tag debian/1064-9 at Debian Med / glam2 -- View it on GitLab: https://salsa.debian.org/med-team/glam2/-/tree/debian/1064-9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/glam2][master] 13 commits: routine-update: Standards-Version: 4.5.1
Andreas Tille pushed to branch master at Debian Med / glam2 Commits: ea6372a2 by Andreas Tille at 2020-12-07T21:08:55+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 51d1c218 by Andreas Tille at 2020-12-07T21:08:55+01:00 routine-update: debhelper-compat 13 - - - - - 1feffcc2 by Andreas Tille at 2020-12-07T21:08:59+01:00 routine-update: Secure URI in copyright format - - - - - 353c9a37 by Andreas Tille at 2020-12-07T21:08:59+01:00 routine-update: Remove trailing whitespace in debian/changelog - - - - - d4fc9c37 by Andreas Tille at 2020-12-07T21:08:59+01:00 routine-update: rename debian/NEWS.Debian debian/NEWS - - - - - 83d1c0c1 by Andreas Tille at 2020-12-07T21:09:00+01:00 routine-update: Add salsa-ci file - - - - - bb332070 by Andreas Tille at 2020-12-07T21:09:00+01:00 routine-update: Rules-Requires-Root: no - - - - - 3a04b824 by Andreas Tille at 2020-12-07T21:09:01+01:00 Trim trailing whitespace. Changes-By: lintian-brush Fixes: lintian: trailing-whitespace See-also: https://lintian.debian.org/tags/trailing-whitespace.html - - - - - bf0524d9 by Andreas Tille at 2020-12-07T21:09:07+01:00 Set field Upstream-Name in debian/copyright. Changes-By: lintian-brush - - - - - 3bdb3ba4 by Andreas Tille at 2020-12-07T21:09:15+01:00 Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Changes-By: lintian-brush - - - - - 6daf4d35 by Andreas Tille at 2020-12-07T22:05:17+01:00 Restore original index - - - - - 3c00cab8 by Andreas Tille at 2020-12-07T22:07:35+01:00 Fix html syntax - - - - - d13dad53 by Andreas Tille at 2020-12-07T22:09:21+01:00 Upload to unstable - - - - - 10 changed files: - debian/NEWS.Debian → debian/NEWS - debian/changelog - − debian/compat - debian/control - debian/copyright - + debian/patches/fix_html_syntax.patch - debian/patches/series - + debian/salsa-ci.yml - debian/upstream/metadata - doc/index.html Changes: = debian/NEWS.Debian → debian/NEWS = = debian/changelog = @@ -1,3 +1,19 @@ +glam2 (1064-9) unstable; urgency=medium + + * Standards-Version: 4.5.1 (routine-update) + * debhelper-compat 13 (routine-update) + * Secure URI in copyright format (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * rename debian/NEWS.Debian debian/NEWS (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Trim trailing whitespace. + * Set field Upstream-Name in debian/copyright. + * Remove obsolete field Name from debian/upstream/metadata (already present in +machine-readable debian/copyright). + + -- Andreas Tille Mon, 07 Dec 2020 22:07:41 +0100 + glam2 (1064-8) unstable; urgency=medium * Team upload. @@ -86,7 +102,7 @@ glam2 (1064-3) unstable; urgency=low glam2 (1064-2) unstable; urgency=low * debian/control, debian/reference: simplified long description and moved -bibliographic references to a new file. +bibliographic references to a new file. -- Charles Plessy Tue, 21 Apr 2009 21:49:54 +0900 @@ -117,4 +133,3 @@ glam2 (1056-1) unstable; urgency=low * Initial release (Closes: #45237) -- Steffen Moeller Tue, 13 Nov 2007 00:35:50 +0100 - = debian/compat deleted = @@ -1 +0,0 @@ -11 = debian/control = @@ -5,12 +5,13 @@ Uploaders: Steffen Moeller , Andreas Tille Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), libfftw3-dev -Standards-Version: 4.3.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/glam2 Vcs-Git: https://salsa.debian.org/med-team/glam2.git Homepage: http://acb.qfab.org/acb/glam2/ +Rules-Requires-Root: no Package: glam2 Architecture: any = debian/copyright = @@ -1,4 +1,4 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Contact: Martin C Frith Timothy L Bailey Source: http://bioinformatics.org.au/glam2/archive/glam2-1064.zip @@ -6,6 +6,7 @@ Source: http://bioinformatics.org.au/glam2/archive/glam2-1064.zip maintained separately at this place any more. Since MEME is non-free we are keeping this old version of glam2 in Debian. Se also https://lists.debian.org/debian-med/2013/11/msg00034.html +Upstream-Name: GLAM2 Files: * Copyright: 2007 Martin C Frith = debian/patches/fix_html_syntax.patch = @@ -0,0 +1,15 @@ +Author: Andreas Tille +Last-Update:
[med-svn] [Git][med-team/python-avro] Pushed new tag upstream/1.10.1+dfsg
Nilesh Patra pushed new tag upstream/1.10.1+dfsg at Debian Med / python-avro -- View it on GitLab: https://salsa.debian.org/med-team/python-avro/-/tree/upstream/1.10.1+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-avro][pristine-tar] pristine-tar data for python-avro_1.10.1+dfsg.orig.tar.xz
Nilesh Patra pushed to branch pristine-tar at Debian Med / python-avro Commits: 0aef7103 by Nilesh Patra at 2020-12-08T01:27:27+05:30 pristine-tar data for python-avro_1.10.1+dfsg.orig.tar.xz - - - - - 2 changed files: - + python-avro_1.10.1+dfsg.orig.tar.xz.delta - + python-avro_1.10.1+dfsg.orig.tar.xz.id Changes: = python-avro_1.10.1+dfsg.orig.tar.xz.delta = Binary files /dev/null and b/python-avro_1.10.1+dfsg.orig.tar.xz.delta differ = python-avro_1.10.1+dfsg.orig.tar.xz.id = @@ -0,0 +1 @@ +07fd98bb6884b65e8b8773dad03d1f31fb62a621 View it on GitLab: https://salsa.debian.org/med-team/python-avro/-/commit/0aef7103bb54055ef7aac1df11e4d117d01c6390 -- View it on GitLab: https://salsa.debian.org/med-team/python-avro/-/commit/0aef7103bb54055ef7aac1df11e4d117d01c6390 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-avro] Pushed new tag debian/1.10.1+dfsg-1
Nilesh Patra pushed new tag debian/1.10.1+dfsg-1 at Debian Med / python-avro -- View it on GitLab: https://salsa.debian.org/med-team/python-avro/-/tree/debian/1.10.1+dfsg-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/bcbio][master] 2 commits: Extended paths available for testing
Steffen Möller pushed to branch master at Debian Med / bcbio Commits: a2aa99d1 by Steffen Moeller at 2020-12-07T18:40:02+01:00 Extended paths available for testing - - - - - 097a6fd6 by Steffen Moeller at 2020-12-07T18:40:30+01:00 Added build dependencies - - - - - 2 changed files: - debian/control - debian/patches/pythonpaths.patch Changes: = debian/control = @@ -57,7 +57,9 @@ Build-Depends: debhelper-compat (= 13), r-other-wasabi , r-bioc-htsfilter , r-bioc-degreport , + r-bioc-purecn , r-cran-tidyverse , + r-bioc-titancna , r-bioc-tximport , r-other-wasabi , salmon , @@ -112,6 +114,8 @@ Recommends: python3-statsmodels, python3-tabulate, r-other-wasabi, + r-bioc-purecn, + r-bioc-titancna, seqan-apps, vcfanno, vt = debian/patches/pythonpaths.patch = @@ -67,7 +67,7 @@ Index: bcbio/tests/run_tests.sh unset PYTHONHOME -unset PYTHONPATH -+export PATH=$(pwd)/scripts:$PATH ++export PATH=$(pwd)/scripts:/usr/lib/debian-med/bin:$PATH +export PYTHONPATH=$(pwd) export PYTHONNOUSERSITE=1 # Ensure version.py exists in raw cloned bcbio directory View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/d94cceaa36d209359b470b29278d2fac746f2901...097a6fd6f3b31b588aa034a942d480a124352aaa -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/d94cceaa36d209359b470b29278d2fac746f2901...097a6fd6f3b31b588aa034a942d480a124352aaa You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/epcr] Pushed new tag debian/2.3.12-1-9
Andreas Tille pushed new tag debian/2.3.12-1-9 at Debian Med / epcr -- View it on GitLab: https://salsa.debian.org/med-team/epcr/-/tree/debian/2.3.12-1-9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/epcr][master] 7 commits: routine-update: Standards-Version: 4.5.1
Andreas Tille pushed to branch master at Debian Med / epcr Commits: 7d529d94 by Andreas Tille at 2020-12-07T21:08:33+01:00 routine-update: Standards-Version: 4.5.1 - - - - - f3c8be27 by Andreas Tille at 2020-12-07T21:08:34+01:00 routine-update: debhelper-compat 13 - - - - - d77bd8bc by Andreas Tille at 2020-12-07T21:08:37+01:00 routine-update: Add salsa-ci file - - - - - 616ab4d4 by Andreas Tille at 2020-12-07T21:08:37+01:00 routine-update: Rules-Requires-Root: no - - - - - 7321ee66 by Andreas Tille at 2020-12-07T21:08:38+01:00 Trim trailing whitespace. Changes-By: lintian-brush Fixes: lintian: trailing-whitespace See-also: https://lintian.debian.org/tags/trailing-whitespace.html - - - - - d73b79e9 by Andreas Tille at 2020-12-07T21:08:42+01:00 Fix day-of-week for changelog entries 1.2.0-3, 1.2.0-2. Changes-By: lintian-brush Fixes: lintian: debian-changelog-has-wrong-day-of-week See-also: https://lintian.debian.org/tags/debian-changelog-has-wrong-day-of-week.html - - - - - 3889a1ef by Andreas Tille at 2020-12-07T21:10:23+01:00 routine-update: Ready to upload to unstable - - - - - 4 changed files: - debian/changelog - − debian/compat - debian/control - + debian/salsa-ci.yml Changes: = debian/changelog = @@ -1,3 +1,14 @@ +epcr (2.3.12-1-9) unstable; urgency=medium + + * Standards-Version: 4.5.1 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Trim trailing whitespace. + * Fix day-of-week for changelog entries 1.2.0-3, 1.2.0-2. + + -- Andreas Tille Mon, 07 Dec 2020 21:08:43 +0100 + epcr (2.3.12-1-8) unstable; urgency=medium [ Saira Hussain ] @@ -213,7 +224,7 @@ epcr (1.2.0-3) unstable; urgency=low and IA64 (patch by Sebastian Muszynski, thanks also go to Lamont Jones) (Closes: #239733). * data package is now architecture-independent (Closes: #233421). - -- Steffen Moeller Thu, 20 Feb 2004 12:50:19 +0100 + -- Steffen Moeller Fri, 20 Feb 2004 12:50:19 +0100 epcr (1.2.0-2) unstable; urgency=low @@ -221,11 +232,10 @@ epcr (1.2.0-2) unstable; urgency=low * Reduced number of ignored errors during build process to ease automated interpretation of buildd logs - -- Steffen Moeller Thu, 20 Feb 2004 12:50:19 +0100 + -- Steffen Moeller Fri, 20 Feb 2004 12:50:19 +0100 epcr (1.2.0-1) unstable; urgency=low * Initial Release (Closes:#221847). * Separated samples and databases to -data package -- Steffen Moeller Thu, 20 Nov 2003 12:50:19 +0100 - = debian/compat deleted = @@ -1 +0,0 @@ -12 = debian/control = @@ -5,11 +5,12 @@ Uploaders: Steffen Moeller , Charles Plessy Section: science Priority: optional -Build-Depends: debhelper (>= 12~) -Standards-Version: 4.3.0 +Build-Depends: debhelper-compat (= 13) +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/epcr Vcs-Git: https://salsa.debian.org/med-team/epcr.git Homepage: https://www.ncbi.nlm.nih.gov/tools/epcr/ +Rules-Requires-Root: no Package: ncbi-epcr Architecture: any = debian/salsa-ci.yml = @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml View it on GitLab: https://salsa.debian.org/med-team/epcr/-/compare/70cd2b1303784ba780246ef2cc54b585c33ee417...3889a1ef1dbef5b9844ad0888a8899e2efe2cfed -- View it on GitLab: https://salsa.debian.org/med-team/epcr/-/compare/70cd2b1303784ba780246ef2cc54b585c33ee417...3889a1ef1dbef5b9844ad0888a8899e2efe2cfed You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/boxshade][master] 5 commits: routine-update: Standards-Version: 4.5.1
Andreas Tille pushed to branch master at Debian Med / boxshade Commits: 3fa8c08d by Andreas Tille at 2020-12-07T21:08:16+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 60e4b6ae by Andreas Tille at 2020-12-07T21:08:16+01:00 routine-update: debhelper-compat 13 - - - - - 07397d26 by Andreas Tille at 2020-12-07T21:08:20+01:00 routine-update: Add salsa-ci file - - - - - 7ddca73e by Andreas Tille at 2020-12-07T21:08:21+01:00 routine-update: Rules-Requires-Root: no - - - - - 9fc407ba by Andreas Tille at 2020-12-07T21:09:46+01:00 routine-update: Ready to upload to unstable - - - - - 4 changed files: - debian/changelog - − debian/compat - debian/control - + debian/salsa-ci.yml Changes: = debian/changelog = @@ -1,3 +1,12 @@ +boxshade (3.3.1-14) unstable; urgency=medium + + * Standards-Version: 4.5.1 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + + -- Andreas Tille Mon, 07 Dec 2020 21:08:29 +0100 + boxshade (3.3.1-13) unstable; urgency=medium [ Nguyen Hoang Tung ] = debian/compat deleted = @@ -1 +0,0 @@ -11 = debian/control = @@ -5,11 +5,12 @@ Uploaders: Steffen Moeller , Andreas Tille Section: science Priority: optional -Build-Depends: debhelper (>= 11~) -Standards-Version: 4.3.0 +Build-Depends: debhelper-compat (= 13) +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/boxshade Vcs-Git: https://salsa.debian.org/med-team/boxshade.git Homepage: http://www.ch.embnet.org/software/BOX_form.html +Rules-Requires-Root: no Package: boxshade Architecture: any = debian/salsa-ci.yml = @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml View it on GitLab: https://salsa.debian.org/med-team/boxshade/-/compare/6476df8d2faee72239331c4f177ee5521194e0a1...9fc407ba762ff802e151276ca3d6c10402316fed -- View it on GitLab: https://salsa.debian.org/med-team/boxshade/-/compare/6476df8d2faee72239331c4f177ee5521194e0a1...9fc407ba762ff802e151276ca3d6c10402316fed You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/boxshade] Pushed new tag debian/3.3.1-14
Andreas Tille pushed new tag debian/3.3.1-14 at Debian Med / boxshade -- View it on GitLab: https://salsa.debian.org/med-team/boxshade/-/tree/debian/3.3.1-14 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/orthanc] Pushed new tag upstream/1.8.1+dfsg
Sebastien Jodogne pushed new tag upstream/1.8.1+dfsg at Debian Med / orthanc -- View it on GitLab: https://salsa.debian.org/med-team/orthanc/-/tree/upstream/1.8.1+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/orthanc] Pushed new tag debian/1.8.1+dfsg-1
Sebastien Jodogne pushed new tag debian/1.8.1+dfsg-1 at Debian Med / orthanc -- View it on GitLab: https://salsa.debian.org/med-team/orthanc/-/tree/debian/1.8.1+dfsg-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/orthanc][upstream] New upstream version 1.8.1+dfsg
Sebastien Jodogne pushed to branch upstream at Debian Med / orthanc Commits: f68412b5 by jodogne-guest at 2020-12-07T18:19:58+01:00 New upstream version 1.8.1+dfsg - - - - - 30 changed files: - .hg_archival.txt - .travis.yml - COPYING - LinuxCompilation.txt - NEWS - OrthancFramework/COPYING - OrthancFramework/Resources/CMake/BoostConfiguration.cmake - OrthancFramework/Resources/CMake/CivetwebConfiguration.cmake - OrthancFramework/Resources/CMake/DownloadOrthancFramework.cmake - OrthancFramework/Resources/CMake/JsonCppConfiguration.cmake - OrthancFramework/Resources/CMake/OrthancFrameworkConfiguration.cmake - OrthancFramework/Resources/CMake/OrthancFrameworkParameters.cmake - OrthancFramework/Resources/CMake/UuidConfiguration.cmake - OrthancFramework/Resources/CMake/WebAssembly/ArithmeticTests/CMakeLists.txt - + OrthancFramework/Resources/CheckOrthancFrameworkSymbols.py - OrthancFramework/Resources/CodeGeneration/ErrorCodes.json - + OrthancFramework/Resources/Patches/civetweb-1.13.patch - OrthancFramework/Resources/Patches/dcmtk-3.6.5.patch - OrthancFramework/Resources/Patches/e2fsprogs-1.44.5-apple.patch → OrthancFramework/Resources/Patches/e2fsprogs-1.44.5.patch - OrthancFramework/Resources/WebAssembly.txt - OrthancFramework/SharedLibrary/CMakeLists.txt - OrthancFramework/SharedLibrary/OrthancFramework.h.in - OrthancFramework/Sources/Cache/MemoryCache.cpp - OrthancFramework/Sources/Cache/MemoryStringCache.cpp - OrthancFramework/Sources/Cache/MemoryStringCache.h - OrthancFramework/Sources/Cache/SharedArchive.cpp - OrthancFramework/Sources/Cache/SharedArchive.h - OrthancFramework/Sources/ChunkedBuffer.cpp - OrthancFramework/Sources/ChunkedBuffer.h - OrthancFramework/Sources/Compatibility.h The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/orthanc/-/commit/f68412b503e9169212cfd9863afe6ec852521eb1 -- View it on GitLab: https://salsa.debian.org/med-team/orthanc/-/commit/f68412b503e9169212cfd9863afe6ec852521eb1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/orthanc][master] 5 commits: New upstream version 1.8.1+dfsg
Sebastien Jodogne pushed to branch master at Debian Med / orthanc Commits: f68412b5 by jodogne-guest at 2020-12-07T18:19:58+01:00 New upstream version 1.8.1+dfsg - - - - - 3296c7e0 by jodogne-guest at 2020-12-07T18:20:00+01:00 Update upstream source from tag 'upstream/1.8.1+dfsg' Update to upstream version '1.8.1+dfsg' with Debian dir 1f483c3b2baeb700c94d871c90ddc6ff6ee422b8 - - - - - 56da4b32 by jodogne-guest at 2020-12-07T18:21:19+01:00 preparing for 1.8.1+dfsg-1 - - - - - c5f722ca by jodogne-guest at 2020-12-07T18:34:02+01:00 updated configuration files - - - - - 4d8f5d0e by jodogne-guest at 2020-12-07T19:15:40+01:00 Upload to unstable - - - - - 30 changed files: - .hg_archival.txt - .travis.yml - COPYING - LinuxCompilation.txt - NEWS - OrthancFramework/COPYING - OrthancFramework/Resources/CMake/BoostConfiguration.cmake - OrthancFramework/Resources/CMake/CivetwebConfiguration.cmake - OrthancFramework/Resources/CMake/DownloadOrthancFramework.cmake - OrthancFramework/Resources/CMake/JsonCppConfiguration.cmake - OrthancFramework/Resources/CMake/OrthancFrameworkConfiguration.cmake - OrthancFramework/Resources/CMake/OrthancFrameworkParameters.cmake - OrthancFramework/Resources/CMake/UuidConfiguration.cmake - OrthancFramework/Resources/CMake/WebAssembly/ArithmeticTests/CMakeLists.txt - + OrthancFramework/Resources/CheckOrthancFrameworkSymbols.py - OrthancFramework/Resources/CodeGeneration/ErrorCodes.json - + OrthancFramework/Resources/Patches/civetweb-1.13.patch - OrthancFramework/Resources/Patches/dcmtk-3.6.5.patch - OrthancFramework/Resources/Patches/e2fsprogs-1.44.5-apple.patch → OrthancFramework/Resources/Patches/e2fsprogs-1.44.5.patch - OrthancFramework/Resources/WebAssembly.txt - OrthancFramework/SharedLibrary/CMakeLists.txt - OrthancFramework/SharedLibrary/OrthancFramework.h.in - OrthancFramework/Sources/Cache/MemoryCache.cpp - OrthancFramework/Sources/Cache/MemoryStringCache.cpp - OrthancFramework/Sources/Cache/MemoryStringCache.h - OrthancFramework/Sources/Cache/SharedArchive.cpp - OrthancFramework/Sources/Cache/SharedArchive.h - OrthancFramework/Sources/ChunkedBuffer.cpp - OrthancFramework/Sources/ChunkedBuffer.h - OrthancFramework/Sources/Compatibility.h The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/orthanc/-/compare/8ad5eeb6f3860927c409855a6b4ac5c47219ed34...4d8f5d0e77b248d9c460e7e36fee203d3caff39c -- View it on GitLab: https://salsa.debian.org/med-team/orthanc/-/compare/8ad5eeb6f3860927c409855a6b4ac5c47219ed34...4d8f5d0e77b248d9c460e7e36fee203d3caff39c You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/orthanc][pristine-tar] pristine-tar data for orthanc_1.8.1+dfsg.orig.tar.xz
Sebastien Jodogne pushed to branch pristine-tar at Debian Med / orthanc Commits: 12b51f4f by jodogne-guest at 2020-12-07T18:20:00+01:00 pristine-tar data for orthanc_1.8.1+dfsg.orig.tar.xz - - - - - 2 changed files: - + orthanc_1.8.1+dfsg.orig.tar.xz.delta - + orthanc_1.8.1+dfsg.orig.tar.xz.id Changes: = orthanc_1.8.1+dfsg.orig.tar.xz.delta = Binary files /dev/null and b/orthanc_1.8.1+dfsg.orig.tar.xz.delta differ = orthanc_1.8.1+dfsg.orig.tar.xz.id = @@ -0,0 +1 @@ +91dfc4f77062611a9f54829c2e8093e9c7b67860 View it on GitLab: https://salsa.debian.org/med-team/orthanc/-/commit/12b51f4f1d9fd5201b5431ad4a4d3a740920f641 -- View it on GitLab: https://salsa.debian.org/med-team/orthanc/-/commit/12b51f4f1d9fd5201b5431ad4a4d3a740920f641 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/salmid] Pushed new tag debian/0.1.23-2
Andreas Tille pushed new tag debian/0.1.23-2 at Debian Med / salmid -- View it on GitLab: https://salsa.debian.org/med-team/salmid/-/tree/debian/0.1.23-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/salmid][master] 6 commits: routine-update: Standards-Version: 4.5.1
Andreas Tille pushed to branch master at Debian Med / salmid Commits: 5c14bc49 by Andreas Tille at 2020-12-07T18:52:02+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 245def61 by Andreas Tille at 2020-12-07T18:52:02+01:00 routine-update: debhelper-compat 13 - - - - - 4a9f14f1 by Andreas Tille at 2020-12-07T18:52:15+01:00 routine-update: Add salsa-ci file - - - - - f47b2803 by Andreas Tille at 2020-12-07T18:52:16+01:00 routine-update: Rules-Requires-Root: no - - - - - eb666fda by Andreas Tille at 2020-12-07T18:52:27+01:00 Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-file-is-missing See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - 47f11978 by Andreas Tille at 2020-12-07T18:54:49+01:00 routine-update: Ready to upload to unstable - - - - - 5 changed files: - debian/changelog - − debian/compat - debian/control - + debian/salsa-ci.yml - + debian/upstream/metadata Changes: = debian/changelog = @@ -1,3 +1,14 @@ +salmid (0.1.23-2) unstable; urgency=medium + + * Standards-Version: 4.5.1 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, +Repository-Browse. + + -- Andreas Tille Mon, 07 Dec 2020 18:52:30 +0100 + salmid (0.1.23-1) unstable; urgency=medium * Initial release (Closes: #920443) = debian/compat deleted = @@ -1 +0,0 @@ -11 = debian/control = @@ -3,14 +3,15 @@ Maintainer: Debian Med Packaging Team Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools -Standards-Version: 4.2.1 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/salmid Vcs-Git: https://salsa.debian.org/med-team/salmid.git Homepage: https://github.com/hcdenbakker/SalmID +Rules-Requires-Root: no Package: salmid Architecture: all = debian/salsa-ci.yml = @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml = debian/upstream/metadata = @@ -0,0 +1,5 @@ +--- +Bug-Database: https://github.com/hcdenbakker/SalmID/issues +Bug-Submit: https://github.com/hcdenbakker/SalmID/issues/new +Repository: https://github.com/hcdenbakker/SalmID.git +Repository-Browse: https://github.com/hcdenbakker/SalmID View it on GitLab: https://salsa.debian.org/med-team/salmid/-/compare/89fed030bcc9750d07607ad7396bd3a57bd38372...47f1197802497447f967e2d31559d28b2fc890b6 -- View it on GitLab: https://salsa.debian.org/med-team/salmid/-/compare/89fed030bcc9750d07607ad7396bd3a57bd38372...47f1197802497447f967e2d31559d28b2fc890b6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mafft] Pushed new tag upstream/7.475
Steffen Möller pushed new tag upstream/7.475 at Debian Med / mafft -- View it on GitLab: https://salsa.debian.org/med-team/mafft/-/tree/upstream/7.475 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mafft] Pushed new tag debian/7.475-1
Steffen Möller pushed new tag debian/7.475-1 at Debian Med / mafft -- View it on GitLab: https://salsa.debian.org/med-team/mafft/-/tree/debian/7.475-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mafft][pristine-tar] pristine-tar data for mafft_7.475.orig.tar.gz
Steffen Möller pushed to branch pristine-tar at Debian Med / mafft Commits: 8eb52f78 by Steffen Moeller at 2020-12-07T18:22:14+01:00 pristine-tar data for mafft_7.475.orig.tar.gz - - - - - 2 changed files: - + mafft_7.475.orig.tar.gz.delta - + mafft_7.475.orig.tar.gz.id Changes: = mafft_7.475.orig.tar.gz.delta = Binary files /dev/null and b/mafft_7.475.orig.tar.gz.delta differ = mafft_7.475.orig.tar.gz.id = @@ -0,0 +1 @@ +a741f58555d2b3163eb60c104d95137d8eb4eb47 View it on GitLab: https://salsa.debian.org/med-team/mafft/-/commit/8eb52f78b631fd92fe8787cb7697fc38a0e0a595 -- View it on GitLab: https://salsa.debian.org/med-team/mafft/-/commit/8eb52f78b631fd92fe8787cb7697fc38a0e0a595 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/scrappie][master] Remove un-necessary install instruction
Nilesh Patra pushed to branch master at Debian Med / scrappie Commits: 1ffab8f9 by Nilesh Patra at 2020-12-07T22:05:45+05:30 Remove un-necessary install instruction - - - - - 1 changed file: - debian/rules Changes: = debian/rules = @@ -89,7 +89,6 @@ else ifeq (i386,$(DEB_HOST_ARCH)) rm -rf scrappie && ln -s ../lib/$(DEB_SOURCE)/simd-dispatch scrappie else dh_auto_install - dh_install usr/bin/scrappie usr/bin/ endif override_dh_auto_clean: View it on GitLab: https://salsa.debian.org/med-team/scrappie/-/commit/1ffab8f97607e2ec68cb1858a873c291e958b8dc -- View it on GitLab: https://salsa.debian.org/med-team/scrappie/-/commit/1ffab8f97607e2ec68cb1858a873c291e958b8dc You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pbcommand] Pushed new tag upstream/2.1.1+git20201023.cc0ed3d
Steffen Möller pushed new tag upstream/2.1.1+git20201023.cc0ed3d at Debian Med / python-pbcommand -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/tree/upstream/2.1.1+git20201023.cc0ed3d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pbcommand] Pushed new tag upstream/1.1.1+git20201023.cc0ed3d
Steffen Möller pushed new tag upstream/1.1.1+git20201023.cc0ed3d at Debian Med / python-pbcommand -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/tree/upstream/1.1.1+git20201023.cc0ed3d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pbcommand] Pushed new tag debian/2.1.1+git20201023.cc0ed3d-1
Steffen Möller pushed new tag debian/2.1.1+git20201023.cc0ed3d-1 at Debian Med / python-pbcommand -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/tree/debian/2.1.1+git20201023.cc0ed3d-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-pbcommand][pristine-tar] 2 commits: pristine-tar data for python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz
Steffen Möller pushed to branch pristine-tar at Debian Med / python-pbcommand Commits: 70dde775 by Steffen Moeller at 2020-12-07T16:24:19+01:00 pristine-tar data for python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz - - - - - 53d36540 by Steffen Moeller at 2020-12-07T16:42:02+01:00 pristine-tar data for python-pbcommand_2.1.1+git20201023.cc0ed3d.orig.tar.xz - - - - - 4 changed files: - + python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz.delta - + python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz.id - + python-pbcommand_2.1.1+git20201023.cc0ed3d.orig.tar.xz.delta - + python-pbcommand_2.1.1+git20201023.cc0ed3d.orig.tar.xz.id Changes: = python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz.delta = Binary files /dev/null and b/python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz.delta differ = python-pbcommand_1.1.1+git20201023.cc0ed3d.orig.tar.xz.id = @@ -0,0 +1 @@ +1ba72455280993f7201899ff272705908d145197 = python-pbcommand_2.1.1+git20201023.cc0ed3d.orig.tar.xz.delta = Binary files /dev/null and b/python-pbcommand_2.1.1+git20201023.cc0ed3d.orig.tar.xz.delta differ = python-pbcommand_2.1.1+git20201023.cc0ed3d.orig.tar.xz.id = @@ -0,0 +1 @@ +1ba72455280993f7201899ff272705908d145197 View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/compare/f21d520660a6fd8d61b7843b96de73259c3ce4e3...53d365407f7b0c345e8dda5b707fae83db0c7725 -- View it on GitLab: https://salsa.debian.org/med-team/python-pbcommand/-/compare/f21d520660a6fd8d61b7843b96de73259c3ce4e3...53d365407f7b0c345e8dda5b707fae83db0c7725 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/lambda-align2][master] 2 commits: Fix FTBFS with glibc 2.32
Andreas Tille pushed to branch master at Debian Med / lambda-align2 Commits: 82607dba by Andreas Tille at 2020-12-07T16:04:05+01:00 Fix FTBFS with glibc 2.32 - - - - - 502fa29d by Andreas Tille at 2020-12-07T16:25:10+01:00 routine-update: Ready to upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/glibc-2.32.patch - debian/patches/series Changes: = debian/changelog = @@ -1,3 +1,11 @@ +lambda-align2 (2.0.0-9) unstable; urgency=medium + + * Team upload. + * Fix FTBFS with glibc 2.32 (thanks for the patch to Gianfranco Costamagna) +Closes: #976691 + + -- Andreas Tille Mon, 07 Dec 2020 16:04:42 +0100 + lambda-align2 (2.0.0-8) unstable; urgency=medium * Team upload. = debian/patches/glibc-2.32.patch = @@ -0,0 +1,16 @@ +Date: Mon, 7 Dec 2020 01:23:09 +0100 +From: Gianfranco Costamagna +Bug-Debian: https://bugs.debian.org/976691 +Description: FTBFS with glibc 2.32, that will probably go in experimental or unstable soon. + The following patch seems to fix the issue, due to a deprecated and removed header file + +--- a/src/shared_misc.hpp b/src/shared_misc.hpp +@@ -26,7 +26,6 @@ + #include + #include + #include +-#include + + #include + #include = debian/patches/series = @@ -2,3 +2,4 @@ enable_tests 32bit set-seqan-cmake-dir.patch force-link-rt-pthread.patch +glibc-2.32.patch View it on GitLab: https://salsa.debian.org/med-team/lambda-align2/-/compare/b00a0d0e794f22ca7120e85d749542dc0cc562f2...502fa29d928eec451fcbf5a3ed155d049d4b879d -- View it on GitLab: https://salsa.debian.org/med-team/lambda-align2/-/compare/b00a0d0e794f22ca7120e85d749542dc0cc562f2...502fa29d928eec451fcbf5a3ed155d049d4b879d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/lambda-align2] Pushed new tag debian/2.0.0-9
Andreas Tille pushed new tag debian/2.0.0-9 at Debian Med / lambda-align2 -- View it on GitLab: https://salsa.debian.org/med-team/lambda-align2/-/tree/debian/2.0.0-9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mia][master] Upload to unstable
Andreas Tille pushed to branch master at Debian Med / mia Commits: d275cc1d by Andreas Tille at 2020-12-07T16:28:16+01:00 Upload to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = @@ -1,4 +1,4 @@ -mia (2.4.7-3) UNRELEASED; urgency=medium +mia (2.4.7-3) unstable; urgency=medium * Team upload. * Build-Depends: s/libnifti-dev/libnifti2-dev/ @@ -8,7 +8,7 @@ mia (2.4.7-3) UNRELEASED; urgency=medium * Rules-Requires-Root: no (routine-update) * Enable dh_missing --fail-missing - -- Andreas Tille Mon, 07 Dec 2020 10:14:15 +0100 + -- Andreas Tille Mon, 07 Dec 2020 15:25:46 +0100 mia (2.4.7-2) unstable; urgency=medium View it on GitLab: https://salsa.debian.org/med-team/mia/-/commit/d275cc1d17bd4eb4a6e8b89ba402f7c58ac898c1 -- View it on GitLab: https://salsa.debian.org/med-team/mia/-/commit/d275cc1d17bd4eb4a6e8b89ba402f7c58ac898c1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/mia] Pushed new tag debian/2.4.7-3
Andreas Tille pushed new tag debian/2.4.7-3 at Debian Med / mia -- View it on GitLab: https://salsa.debian.org/med-team/mia/-/tree/debian/2.4.7-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/minc-tools] Pushed new tag debian/2.3.00+dfsg-5
Andreas Tille pushed new tag debian/2.3.00+dfsg-5 at Debian Med / minc-tools -- View it on GitLab: https://salsa.debian.org/med-team/minc-tools/-/tree/debian/2.3.00+dfsg-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/minc-tools][master] 6 commits: Build-Depends: s/libnifti-dev/libnifti2-dev/
Andreas Tille pushed to branch master at Debian Med / minc-tools Commits: 527fa432 by Andreas Tille at 2020-12-07T15:28:15+01:00 Build-Depends: s/libnifti-dev/libnifti2-dev/ - - - - - 77241dc2 by Andreas Tille at 2020-12-07T15:28:35+01:00 routine-update: Standards-Version: 4.5.1 - - - - - fa576d32 by Andreas Tille at 2020-12-07T15:29:20+01:00 routine-update: Add salsa-ci file - - - - - 16592519 by Andreas Tille at 2020-12-07T15:29:30+01:00 Use secure URI in Homepage field. Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - 5eea4b6b by Andreas Tille at 2020-12-07T15:29:31+01:00 Set upstream metadata fields: Bug-Submit. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html - - - - - 5bed2d78 by Andreas Tille at 2020-12-07T15:35:17+01:00 routine-update: Ready to upload to unstable - - - - - 4 changed files: - debian/changelog - debian/control - + debian/salsa-ci.yml - debian/upstream/metadata Changes: = debian/changelog = @@ -1,3 +1,13 @@ +minc-tools (2.3.00+dfsg-5) unstable; urgency=medium + + * Build-Depends: s/libnifti-dev/libnifti2-dev/ + * Standards-Version: 4.5.1 (routine-update) + * Add salsa-ci file (routine-update) + * Use secure URI in Homepage field. + * Set upstream metadata fields: Bug-Submit. + + -- Andreas Tille Mon, 07 Dec 2020 15:29:32 +0100 + minc-tools (2.3.00+dfsg-4) unstable; urgency=medium * Team Upload. = debian/control = @@ -9,15 +9,15 @@ Build-Depends: debhelper-compat (= 13), bison, flex, libminc-dev (>= 2.3), - libnifti-dev, + libnifti2-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev -Standards-Version: 4.5.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/minc-tools Vcs-Git: https://salsa.debian.org/med-team/minc-tools.git -Homepage: http://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage +Homepage: https://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Rules-Requires-Root: no Package: minc-tools = debian/salsa-ci.yml = @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml = debian/upstream/metadata = @@ -3,5 +3,6 @@ Archive: GitHub Bug-Database: https://github.com/BIC-MNI/libminc/issues Contact: https://github.com/BIC-MNI/libminc/issues Name: libminc +Bug-Submit: https://github.com/BIC-MNI/libminc/issues/new Repository: https://github.com/BIC-MNI/libminc.git Repository-Browse: https://github.com/BIC-MNI/libminc View it on GitLab: https://salsa.debian.org/med-team/minc-tools/-/compare/3d30b4647cad32b76af15b2d5477bf7840b5e04e...5bed2d78768fca40ea0cd03b4c7b59a0405af7a2 -- View it on GitLab: https://salsa.debian.org/med-team/minc-tools/-/compare/3d30b4647cad32b76af15b2d5477bf7840b5e04e...5bed2d78768fca40ea0cd03b4c7b59a0405af7a2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/scrappie][mr-c-wip] ignore the root Makefile, use cmake
Michael R. Crusoe pushed to branch mr-c-wip at Debian Med / scrappie Commits: 7d376d70 by Michael R. Crusoe at 2020-12-07T13:27:18+01:00 ignore the root Makefile, use cmake - - - - - 2 changed files: - debian/rules - − debian/scrappie.install Changes: = debian/rules = @@ -8,4 +8,4 @@ export DEB_CXXFLAGS_MAINT_APPEND+=-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 #export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed %: - dh $@ + dh $@ --buildsystem=cmake = debian/scrappie.install deleted = @@ -1 +0,0 @@ -build/scrappie usr/bin View it on GitLab: https://salsa.debian.org/med-team/scrappie/-/commit/7d376d703944ca373262eafc3266610a44e0963d -- View it on GitLab: https://salsa.debian.org/med-team/scrappie/-/commit/7d376d703944ca373262eafc3266610a44e0963d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/scrappie] Pushed new branch mr-c-wip
Michael R. Crusoe pushed new branch mr-c-wip at Debian Med / scrappie -- View it on GitLab: https://salsa.debian.org/med-team/scrappie/-/tree/mr-c-wip You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/scrappie][master] Update simde fix
Nilesh Patra pushed to branch master at Debian Med / scrappie
Commits:
d47c7b0f by Nilesh Patra at 2020-12-07T17:02:20+05:30
Update simde fix
- - - - -
1 changed file:
- debian/patches/simde.patch
Changes:
=
debian/patches/simde.patch
=
@@ -33,7 +33,7 @@
/* yes I know, the top of this file is quite ugly */
#ifdef _MSC_VER /* visual c++ */
-@@ -55,12 +53,9 @@
+@@ -55,12 +53,10 @@
/* __m128 is ugly to write */
typedef __m128 v4sf; // vector of 4 float (sse1)
@@ -45,10 +45,11 @@
-#else
-typedef __m64 v2si; // vector of 2 int (mmx)
-#endif
++typedef float __v4sf __attribute__ ((__vector_size__ (16)));
/* declare some SSE constants -- why can't I figure a better way to do that?
*/
#define _PS_CONST(Name, Val)\
-@@ -99,61 +94,24 @@
+@@ -99,61 +95,24 @@
_PS_CONST(cephes_log_q1, -2.12194440e-4);
_PS_CONST(cephes_log_q2, 0.693359375);
@@ -110,7 +111,7 @@
e = _mm_add_ps(e, one);
-@@ -224,11 +182,7 @@
+@@ -224,11 +183,7 @@
static inline __attribute__((__always_inline__)) v4sf exp_ps(v4sf x) {
v4sf tmp = _mm_setzero_ps(), fx;
@@ -122,7 +123,7 @@
v4sf one = *(v4sf*)_ps_1;
x = _mm_min_ps(x, *(v4sf*)_ps_exp_hi);
-@@ -239,17 +193,9 @@
+@@ -239,17 +194,9 @@
fx = _mm_add_ps(fx, *(v4sf*)_ps_0p5);
/* how to perform a floorf with SSE: just below */
@@ -141,7 +142,7 @@
/* if greater, substract 1 */
v4sf mask = _mm_cmpgt_ps(tmp, fx);
mask = _mm_and_ps(mask, one);
-@@ -278,24 +224,10 @@
+@@ -278,24 +225,10 @@
y = _mm_add_ps(y, one);
/* build 2^n */
@@ -166,7 +167,7 @@
y = _mm_mul_ps(y, pow2n);
return y;
}
-@@ -342,12 +274,8 @@
+@@ -342,12 +275,8 @@
*/
static v4sf sin_ps(v4sf x) { // any x
v4sf xmm1, xmm2 = _mm_setzero_ps(), xmm3, sign_bit, y;
@@ -180,7 +181,7 @@
sign_bit = x;
/* take the absolute value */
x = _mm_and_ps(x, *(v4sf*)_ps_inv_sign_mask);
-@@ -357,7 +285,6 @@
+@@ -357,7 +286,6 @@
/* scale by 4/Pi */
y = _mm_mul_ps(x, *(v4sf*)_ps_cephes_FOPI);
@@ -188,7 +189,7 @@
/* store the integer part of y in mm0 */
emm2 = _mm_cvttps_epi32(y);
/* j=(j+1) & (~1) (see the cephes sources) */
-@@ -381,34 +308,6 @@
+@@ -381,34 +309,6 @@
v4sf poly_mask = _mm_castsi128_ps(emm2);
sign_bit = _mm_xor_ps(sign_bit, swap_sign_bit);
@@ -223,7 +224,7 @@
/* The magic pass: "Extended precision modular arithmetic"
x = ((x - y * DP1) - y * DP2) - y * DP3; */
xmm1 = *(v4sf*)_ps_minus_cephes_DP1;
-@@ -459,18 +358,14 @@
+@@ -459,18 +359,14 @@
/* almost the same as sin_ps */
static v4sf cos_ps(v4sf x) { // any x
v4sf xmm1, xmm2 = _mm_setzero_ps(), xmm3, y;
@@ -243,7 +244,7 @@
/* store the integer part of y in mm0 */
emm2 = _mm_cvttps_epi32(y);
/* j=(j+1) & (~1) (see the cephes sources) */
-@@ -489,43 +384,7 @@
+@@ -489,43 +385,7 @@
v4sf sign_bit = _mm_castsi128_ps(emm0);
v4sf poly_mask = _mm_castsi128_ps(emm2);
@@ -287,7 +288,7 @@
/* The magic pass: "Extended precision modular arithmetic"
x = ((x - y * DP1) - y * DP2) - y * DP3; */
xmm1 = *(v4sf*)_ps_minus_cephes_DP1;
-@@ -578,11 +437,8 @@
+@@ -578,11 +438,8 @@
it is almost as fast, and gives you a free cosine with your sine */
static void sincos_ps(v4sf x, v4sf *s, v4sf *c) {
v4sf xmm1, xmm2, xmm3 = _mm_setzero_ps(), sign_bit_sin, y;
@@ -300,7 +301,7 @@
sign_bit_sin = x;
/* take the absolute value */
x = _mm_and_ps(x, *(v4sf*)_ps_inv_sign_mask);
-@@ -592,7 +448,6 @@
+@@ -592,7 +449,6 @@
/* scale by 4/Pi */
y = _mm_mul_ps(x, *(v4sf*)_ps_cephes_FOPI);
@@ -308,7 +309,7 @@
/* store the integer part of y in emm2 */
emm2 = _mm_cvttps_epi32(y);
-@@ -612,40 +467,6 @@
+@@ -612,40 +468,6 @@
emm2 = _mm_and_si128(emm2, *(v4si*)_pi32_2);
emm2 = _mm_cmpeq_epi32(emm2, _mm_setzero_si128());
v4sf poly_mask = _mm_castsi128_ps(emm2);
@@ -349,7 +350,7 @@
/* The magic pass: "Extended precision modular arithmetic"
x = ((x - y * DP1) - y * DP2) - y * DP3; */
-@@ -659,23 +480,10 @@
+@@ -659,23 +481,10 @@
x = _mm_add_ps(x, xmm2);
x = _mm_add_ps(x, xmm3);
@@ -396,3 +397,37 @@
)
with open('pyscrap.h', 'r') as fh:
+--- a/src/decode.c
b/src/decode.c
+@@ -7,30 +7,6 @@
+ #define NBASE 4
+ #define BIG_FLOAT 1.e30f
+
+-#ifndef __SSE2__
+-#error "Compilation of function decode_transducer requires a processor
that supports at least SSE2"
+-#endif
+-
+-#ifndef __SSE4_1__
+-/** Multiply two vectors of 32 bit integers together
+- *
+- * Emulates the SSE4.1 instruction _mm_mullo_epi32 on hardware that only
supports
+- * SSE2. See
https://software.intel.com/en-us/forums/intel-c-compiler/topic/288768
+- *
+- * @param x first vector to multiply
+- * @param y second vector to multiply
+- *
+- * @returns vector of integers containing the lower 32 bits of x * y
+- **/
+-static inline __m128i
[med-svn] [Git][med-team/scrappie][master] Add TODO
Nilesh Patra pushed to branch master at Debian Med / scrappie Commits: 4cab7997 by Nilesh Patra at 2020-12-07T14:35:09+05:30 Add TODO - - - - - 1 changed file: - + debian/TODO Changes: = debian/TODO = @@ -0,0 +1 @@ +Need to add workaround for v4sf for other arches: not ready for upload yet. View it on GitLab: https://salsa.debian.org/med-team/scrappie/-/commit/4cab7997335be0022b3f5e3828b6c8db9e45e65b -- View it on GitLab: https://salsa.debian.org/med-team/scrappie/-/commit/4cab7997335be0022b3f5e3828b6c8db9e45e65b You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
