[med-svn] [Git][med-team/q2-diversity-lib] Pushed new tag debian/2022.8.0-3
Nilesh Patra pushed new tag debian/2022.8.0-3 at Debian Med / q2-diversity-lib -- View it on GitLab: https://salsa.debian.org/med-team/q2-diversity-lib/-/tree/debian/2022.8.0-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/q2-diversity-lib][master] 3 commits: Add Depends on python3-sklearn
Nilesh Patra pushed to branch master at Debian Med / q2-diversity-lib
Commits:
6c1189c5 by Nilesh Patra at 2023-01-06T08:29:28+05:30
Add Depends on python3-sklearn
- - - - -
58f88bce by Nilesh Patra at 2023-01-06T08:29:29+05:30
Bump Standards-Version to 4.6.2 (no changes needed)
- - - - -
21d14684 by Nilesh Patra at 2023-01-06T08:30:33+05:30
Upload to unstable
- - - - -
2 changed files:
- debian/changelog
- debian/control
Changes:
=
debian/changelog
=
@@ -1,3 +1,11 @@
+q2-diversity-lib (2022.8.0-3) unstable; urgency=high
+
+ * Team Upload.
+ * Add Depends on python3-sklearn
+ * Bump Standards-Version to 4.6.2 (no changes needed)
+
+ -- Nilesh Patra Fri, 06 Jan 2023 08:30:25 +0530
+
q2-diversity-lib (2022.8.0-2) unstable; urgency=medium
[ Andreas Tille ]
=
debian/control
=
@@ -11,7 +11,7 @@ Build-Depends: debhelper-compat (= 13),
python3-statsmodels ,
python3-unifrac (>= 1.1.1) ,
qiime (>= 2022.8.1)
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/q2-diversity-lib
Vcs-Git: https://salsa.debian.org/med-team/q2-diversity-lib.git
Homepage: https://qiime2.org/
@@ -23,6 +23,7 @@ Depends: ${shlibs:Depends},
${misc:Depends},
${python3:Depends},
python3-pandas,
+ python3-sklearn,
qiime (>= 2022.8.1),
q2-emperor (>= 2022.8.0),
q2-feature-table (>= 2022.8.0),
View it on GitLab:
https://salsa.debian.org/med-team/q2-diversity-lib/-/compare/92c87e98a5b13fbd6a043e4a46c3d3d8816440b0...21d14684280ff3cf357a0e798b8512013eb6e6fb
--
View it on GitLab:
https://salsa.debian.org/med-team/q2-diversity-lib/-/compare/92c87e98a5b13fbd6a043e4a46c3d3d8816440b0...21d14684280ff3cf357a0e798b8512013eb6e6fb
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[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 5daae0aa by Andreas Tille at 2023-01-06T01:42:26+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 05 Jan 2023 13:42:04 + +Last-Update: Fri, 06 Jan 2023 01:42:04 + Source| Vote | Tasks | Tags ---++-+-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 05 Jan 2023 13:42:05 + +Last-Update: Fri, 06 Jan 2023 01:42:05 + Source | Vote | Tasks |Tags -+++ = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Thu, 05 Jan 2023 13:42:06 + +Last-Update: Fri, 06 Jan 2023 01:42:05 + Source | Vote | Tags --++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5daae0aad7315b9b90302d9e9ac3befcc8a6487d -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5daae0aad7315b9b90302d9e9ac3befcc8a6487d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/nipy][master] 4 commits: d/rules: regenerate C source from .pyx with Cython.
Étienne Mollier pushed to branch master at Debian Med / nipy
Commits:
85899a6f by Étienne Mollier at 2023-01-05T23:12:51+01:00
d/rules: regenerate C source from .pyx with Cython.
Closes: #1024036
- - - - -
ce8437be by Étienne Mollier at 2023-01-05T23:20:03+01:00
d/control: manpages unreadable currently, so disabled.
- - - - -
71407b6e by Étienne Mollier at 2023-01-05T23:41:22+01:00
d/control: bring back support to all python3 versions.
- - - - -
6121b714 by Étienne Mollier at 2023-01-05T23:42:56+01:00
ready to upload to unstable.
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/rules
Changes:
=
debian/changelog
=
@@ -1,3 +1,12 @@
+nipy (0.5.0-5) unstable; urgency=medium
+
+ * Team upload.
+ * d/rules: regenerate C source from .pyx with Cython. (Closes: #1024036)
+ * d/control: manpages unreadable currently, so disabled.
+ * d/control: bring back support to all python3 versions.
+
+ -- Étienne Mollier Thu, 05 Jan 2023 23:41:51 +0100
+
nipy (0.5.0-4) unstable; urgency=medium
* Team Upload.
=
debian/control
=
@@ -7,7 +7,7 @@ Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
- python3-dev,
+ python3-all-dev,
python3-setuptools,
python3-scipy,
python3-numpy,
=
debian/rules
=
@@ -38,6 +38,10 @@ manpages:
>| ../../../../build/manpages/$$f.1; \
done
+execute_before_dh_auto_build:
+ @echo 'I: Force regeneration of C code resulting from .pyx files'
+ find $(CURDIR)/nipy/ -name '*.pyx' -exec cython3 '{}' ';'
+
override_dh_auto_build-indep:
: # I: build the arch-dep packages to be able to build the docs
dh_auto_build
@@ -92,7 +96,8 @@ override_dh_compress:
dh_compress -X.py -X.html -X.pdf -X.css -X.jpg -X.txt -X.js -X.json
-X.rtc -Xobjects.inv
override_dh_installman: manpages
- dh_installman -ppython3-nipy build/manpages/*.1
+ # FIXME: in their current state, manpages are useless, so are disabled.
+ #dh_installman -ppython3-nipy build/manpages/*.1
override_dh_clean:
: # I: Custom cleaning
View it on GitLab:
https://salsa.debian.org/med-team/nipy/-/compare/31a09ea3fc0f695df6bac814081ec16cd48b546c...6121b714fcc8042e26e69d13c8dfa9b09443f320
--
View it on GitLab:
https://salsa.debian.org/med-team/nipy/-/compare/31a09ea3fc0f695df6bac814081ec16cd48b546c...6121b714fcc8042e26e69d13c8dfa9b09443f320
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[med-svn] [Git][med-team/unifrac-tools] Pushed new tag debian/1.2-1
Nilesh Patra pushed new tag debian/1.2-1 at Debian Med / unifrac-tools -- View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/tree/debian/1.2-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/unifrac-tools][master] 2 commits: Add patch to enable debug flags
Nilesh Patra pushed to branch master at Debian Med / unifrac-tools Commits: 422c202e by Nilesh Patra at 2023-01-05T22:20:41+05:30 Add patch to enable debug flags - - - - - f20c605c by Nilesh Patra at 2023-01-05T22:20:41+05:30 Upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/enable-debug-flag.patch - debian/patches/series Changes: = debian/changelog = @@ -1,6 +1,7 @@ -unifrac-tools (1.2-1) UNRELEASED; urgency=medium +unifrac-tools (1.2-1) unstable; urgency=medium [ Andreas Tille ] + * Team Upload. * Fix Homepage Closes: #1026296 * New upstream version @@ -10,8 +11,9 @@ unifrac-tools (1.2-1) UNRELEASED; urgency=medium [ Nilesh Patra ] * Do not pass -noshlib to ldflags + * Add patch to enable debug flags - -- Nilesh Patra Tue, 03 Jan 2023 21:03:08 +0530 + -- Nilesh Patra Thu, 05 Jan 2023 22:09:46 +0530 unifrac-tools (1.1.3-2) unstable; urgency=medium = debian/patches/enable-debug-flag.patch = @@ -0,0 +1,14 @@ +Description: Add debug flag to cppflags +Author: Nilesh Patra +Last-Update: 2023-01-05 +--- a/src/Makefile b/src/Makefile +@@ -86,7 +86,7 @@ + BLASLIB=-llapacke -lblas + + +-CPPFLAGS += -Wall -std=c++14 -pedantic -I. $(OPT) -fPIC -L$(PREFIX)/lib ++CPPFLAGS += -g -Wall -std=c++14 -pedantic -I. $(OPT) -fPIC -L$(PREFIX)/lib + + all: api main install + = debian/patches/series = @@ -3,3 +3,4 @@ python3.patch soname.patch baseline.patch enable_linking_to_shared_hdf5_lib.patch +enable-debug-flag.patch View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/5ff6dcb98426e24e3a3071fef6f9a8cd4e785cec...f20c605c7382b8108498eaea3f89b16669186f28 -- View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/5ff6dcb98426e24e3a3071fef6f9a8cd4e785cec...f20c605c7382b8108498eaea3f89b16669186f28 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/vtk-dicom][master] 4 commits: d/patches: Refresh patches
Mathieu Malaterre pushed to branch master at Debian Med / vtk-dicom
Commits:
ba71a5fb by Mathieu Malaterre at 2023-01-05T11:42:04+01:00
d/patches: Refresh patches
- - - - -
d373f787 by Mathieu Malaterre at 2023-01-05T11:42:19+01:00
d/control: Bump Std-Vers to 4.6.2 no changes needed
- - - - -
195abf84 by Mathieu Malaterre at 2023-01-05T11:45:01+01:00
d/control: Remove unneeded dependency
- - - - -
da0f82d9 by Mathieu Malaterre at 2023-01-05T11:46:22+01:00
d/changelog: Upload 0.8.13-2 to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/patches/01_reproducable_build_datetime.patch
- debian/patches/03_test_python3.patch
Changes:
=
debian/changelog
=
@@ -1,3 +1,12 @@
+vtk-dicom (0.8.13-2) unstable; urgency=medium
+
+ * Team upload.
+ * d/patches: Refresh patches
+ * d/control: Bump Std-Vers to 4.6.2 no changes needed
+ * d/control: Remove unneeded dependency
+
+ -- Mathieu Malaterre Thu, 05 Jan 2023 11:45:48 +0100
+
vtk-dicom (0.8.13-1) experimental; urgency=medium
* New upstream version 0.8.13
=
debian/control
=
@@ -10,12 +10,11 @@ Build-Depends: cmake,
help2man,
libgdcm-dev,
libvtk9-dev,
- libvtk9-qt-dev,
python3-dev,
python3-vtk9,
xauth,
xvfb
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/vtk-dicom
Vcs-Git: https://salsa.debian.org/med-team/vtk-dicom.git
Homepage: http://github.com/dgobbi/vtk-dicom/
=
debian/patches/01_reproducable_build_datetime.patch
=
@@ -1,8 +1,10 @@
Description: Use SOURCE_DATE_EPOCH if available
Author: Gert Wollny
a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -200,8 +200,17 @@
+Index: vtk-dicom/CMakeLists.txt
+===
+--- vtk-dicom.orig/CMakeLists.txt
vtk-dicom/CMakeLists.txt
+@@ -317,8 +317,17 @@ if(WIN32)
# string(REGEX REPLACE "[^0-9]*(..:..:..).*" "\\1"
#DICOM_BUILD_TIME "${TIME}")
else()
=
debian/patches/03_test_python3.patch
=
@@ -1,17 +1,21 @@
Author: Gert Wollny
Description: Run test using python3
a/Testing/TestDICOMPython.py
-+++ b/Testing/TestDICOMPython.py
+Index: vtk-dicom/Testing/TestDICOMPython.py
+===
+--- vtk-dicom.orig/Testing/TestDICOMPython.py
vtk-dicom/Testing/TestDICOMPython.py
@@ -1,4 +1,4 @@
-#! /usr/bin/env python2
+#! /usr/bin/env python3
import sys
import vtk
a/Testing/CMakeLists.txt
-+++ b/Testing/CMakeLists.txt
-@@ -65,7 +65,7 @@
+Index: vtk-dicom/Testing/CMakeLists.txt
+===
+--- vtk-dicom.orig/Testing/CMakeLists.txt
vtk-dicom/Testing/CMakeLists.txt
+@@ -54,7 +54,7 @@ if(BUILD_PYTHON_WRAPPERS)
endif()
if(NOT VTK_PYTHON_EXE)
# fall back to using python rather than vtkpython
View it on GitLab:
https://salsa.debian.org/med-team/vtk-dicom/-/compare/f051bf2d8016482cd467d64569e9a76a8488b4e3...da0f82d9efd04c007d4ddd6211706a6bddceba37
--
View it on GitLab:
https://salsa.debian.org/med-team/vtk-dicom/-/compare/f051bf2d8016482cd467d64569e9a76a8488b4e3...da0f82d9efd04c007d4ddd6211706a6bddceba37
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[med-svn] [Git][med-team/vtk-dicom] Pushed new tag debian/0.8.13-2
Mathieu Malaterre pushed new tag debian/0.8.13-2 at Debian Med / vtk-dicom -- View it on GitLab: https://salsa.debian.org/med-team/vtk-dicom/-/tree/debian/0.8.13-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/community/package_template][master] 2 commits: New year
Andreas Tille pushed to branch master at Debian Med / community / package_template Commits: 07f2134c by Andreas Tille at 2023-01-05T10:23:18+01:00 New year - - - - - d26712e1 by Andreas Tille at 2023-01-05T10:23:30+01:00 Bump to latest Standards-Version - - - - - 2 changed files: - debian/control - debian/copyright Changes: = debian/control = @@ -4,7 +4,7 @@ Priority: optional Maintainer: Debian Med Packaging Team Uploaders: Build-Depends: debhelper-compat (= 13) -Standards-Version: 4.6.0 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ Vcs-Git: https://salsa.debian.org/med-team/.git Homepage: = debian/copyright = @@ -12,5 +12,5 @@ Copyright: 20xx-20yy License: Files: debian/* -Copyright: 2022 +Copyright: 2023 License: View it on GitLab: https://salsa.debian.org/med-team/community/package_template/-/compare/4717d39025756d572a87ebf5566148583aba8e15...d26712e1bf3da6b615df18362e0294085eab16f0 -- View it on GitLab: https://salsa.debian.org/med-team/community/package_template/-/compare/4717d39025756d572a87ebf5566148583aba8e15...d26712e1bf3da6b615df18362e0294085eab16f0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
