[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: c7c6faed by Andreas Tille at 2024-02-20T01:43:35+00:00 automatic update - - - - - 4 changed files: - debian-med-tests.txt - debian-science-tests.txt - outdated_med-packages.txt - python-team-tests.txt Changes: = debian-med-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 19 Feb 2024 13:42:06 + +Last-Update: Tue, 20 Feb 2024 01:42:08 + Source| Vote | Tasks | Tags ---+++-- = debian-science-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 19 Feb 2024 13:42:09 + +Last-Update: Tue, 20 Feb 2024 01:42:08 + Source | Vote | Tasks | Tags ---++-+- = outdated_med-packages.txt = The diff for this file was not included because it is too large. = python-team-tests.txt = @@ -1,4 +1,4 @@ -Last-Update: Mon, 19 Feb 2024 13:42:12 + +Last-Update: Tue, 20 Feb 2024 01:42:08 + Source | Vote | Tags ++ View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c7c6faed029ed6a038b48717f261d519cd8eaa4e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c7c6faed029ed6a038b48717f261d519cd8eaa4e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-awkward][master] 3 commits: use dh_python3 correctly
Sascha Steinbiss pushed to branch master at Debian Med / python-awkward
Commits:
fcddb40b by Sascha Steinbiss at 2024-02-19T21:18:52+01:00
use dh_python3 correctly
- - - - -
3206deb6 by Sascha Steinbiss at 2024-02-19T21:18:58+01:00
add hardening flags
- - - - -
b81bbd73 by Sascha Steinbiss at 2024-02-19T21:19:02+01:00
dch -r
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/rules
Changes:
=
debian/changelog
=
@@ -1,5 +1,6 @@
-python-awkward (2.6.1-1) UNRELEASED; urgency=medium
+python-awkward (2.6.1-1) unstable; urgency=medium
- * Initial release (Closes: #)
+ [ Andreas Tille ]
+ * Initial release (Closes: #1064291)
- -- Andreas Tille Sat, 17 Feb 2024 19:13:57 +0100
+ -- Sascha Steinbiss Mon, 19 Feb 2024 18:28:57 +0100
=
debian/control
=
@@ -31,12 +31,7 @@ Package: python3-awkward
Architecture: any
Depends: ${misc:Depends},
${shlibs:Depends},
- ${python3:Depends},
- python3-packaging,
- python3-numpy,
- python3-fsspec,
- python3-typing-extensions,
- python3-importlib-metadata
+ ${python3:Depends}
Description: manipulate JSON-like data with NumPy-like idioms
Awkward Array is a library for nested, variable-sized data, including
arbitrary-length lists, records, mixed types, and missing data, using
@@ -45,4 +40,3 @@ Description: manipulate JSON-like data with NumPy-like idioms
Arrays are dynamically typed, but operations on them are compiled and fast.
Their behavior coincides with NumPy when array dimensions are regular and
generalizes when they're not.
-
=
debian/rules
=
@@ -3,6 +3,7 @@
export PYBUILD_DESTDIR = debian/tmp_i_mean_it
export PYBUILD_TEST_ARGS=-v
export PY_IGNORE_IMPORTMISMATCH=1
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
%:
dh $@ --buildsystem=pybuild
@@ -22,7 +23,7 @@ override_dh_install:
dh_install --sourcedir=debian/tmp_i_mean_it
override_dh_python3:
- dh_python3 --no-ext-rename
/usr/lib/python3/dist-packages/awkward_cpp/lib/*
+ dh_python3 --no-ext-rename
override_dh_auto_test:
# pass
View it on GitLab:
https://salsa.debian.org/med-team/python-awkward/-/compare/b53d7cd6d377ac201cb28c1567ca8863c1ef3f69...b81bbd73b08d6bb984db011bb93d46cc34c5ab27
--
View it on GitLab:
https://salsa.debian.org/med-team/python-awkward/-/compare/b53d7cd6d377ac201cb28c1567ca8863c1ef3f69...b81bbd73b08d6bb984db011bb93d46cc34c5ab27
You're receiving this email because of your account on salsa.debian.org.
___
debian-med-commit mailing list
debian-med-com...@alioth-lists.debian.net
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-awkward][master] 4 commits: add myself to d/copyright
Sascha Steinbiss pushed to branch master at Debian Med / python-awkward
Commits:
9b3d7a70 by Sascha Steinbiss at 2024-02-19T18:52:48+01:00
add myself to d/copyright
- - - - -
e4525de5 by Sascha Steinbiss at 2024-02-19T18:52:54+01:00
complete dependencies
- - - - -
1a8caecf by Sascha Steinbiss at 2024-02-19T18:53:01+01:00
add upstream metadata
- - - - -
b53d7cd6 by Sascha Steinbiss at 2024-02-19T18:53:13+01:00
add minimal autopkgtest
- - - - -
5 changed files:
- debian/control
- debian/copyright
- + debian/tests/control
- + debian/tests/python-test
- + debian/upstream/metadata
Changes:
=
debian/control
=
@@ -31,7 +31,12 @@ Package: python3-awkward
Architecture: any
Depends: ${misc:Depends},
${shlibs:Depends},
- ${python3:Depends}
+ ${python3:Depends},
+ python3-packaging,
+ python3-numpy,
+ python3-fsspec,
+ python3-typing-extensions,
+ python3-importlib-metadata
Description: manipulate JSON-like data with NumPy-like idioms
Awkward Array is a library for nested, variable-sized data, including
arbitrary-length lists, records, mixed types, and missing data, using
=
debian/copyright
=
@@ -8,6 +8,7 @@ License: BSD-3-Clause
Files: debian/*
Copyright: 2024 Andreas Tille
+ 2024 Sascha Steinbiss
License: BSD-3-Clause
Files: src/awkward/_operators.py
=
debian/tests/control
=
@@ -0,0 +1,3 @@
+Tests: python-test
+Depends: python3-awkward, python3-numpy
+Restrictions: allow-stderr, skip-not-installable
=
debian/tests/python-test
=
@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+# autopkgtest check: Check whether awkward module is importable
+# and does basic tasks
+# Author: Sascha Steinbiss
+
+import awkward
+
+array = awkward.Array([[{"x": 1.1, "y": [1]}, {"x": 2.2, "y": [1, 2]}, {"x":
3.3, "y": [1, 2, 3]}], [], [{"x": 4.4, "y": [1, 2, 3, 4]}, {"x": 5.5, "y": [1,
2, 3, 4, 5]}]])
+
+import numpy as np
+
+output = np.square(array["y", ..., 1:])
=
debian/upstream/metadata
=
@@ -0,0 +1,14 @@
+Bug-Database: https://github.com/scikit-hep/awkward
+Bug-Submit: https://github.com/scikit-hep/awkward/issues/new
+Repository: https://github.com/scikit-hep/awkward.git
+Repository-Browse: https://github.com/scikit-hep/awkward
+Reference:
+ Author: >
+Jim Pivarski and Peter Elmer and David Lange
+ Title: >
+Awkward Arrays in Python, C++, and Numba
+ Journal: EPJ Web Conf.
+ Year: 2018
+ Volume: 245
+ DOI: 10.1051/epjconf/202024505023
+ URL:
https://www.epj-conferences.org/articles/epjconf/abs/2020/21/epjconf_chep2020_05023/epjconf_chep2020_05023.html
View it on GitLab:
https://salsa.debian.org/med-team/python-awkward/-/compare/1de0f0d72b215785340b6078f40c721a09f9aa1d...b53d7cd6d377ac201cb28c1567ca8863c1ef3f69
--
View it on GitLab:
https://salsa.debian.org/med-team/python-awkward/-/compare/1de0f0d72b215785340b6078f40c721a09f9aa1d...b53d7cd6d377ac201cb28c1567ca8863c1ef3f69
You're receiving this email because of your account on salsa.debian.org.
___
debian-med-commit mailing list
debian-med-com...@alioth-lists.debian.net
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/macs][master] Upstream considers the cause for the problem in python3-hmmlearn so make some...
Andreas Tille pushed to branch master at Debian Med / macs
Commits:
1d1c7ced by Andreas Tille at 2024-02-19T17:49:43+01:00
Upstream considers the cause for the problem in python3-hmmlearn so make some
versioned dependency from patch (>= 0.3.0-4~) ... but this also does not
really help
- - - - -
1 changed file:
- debian/control
Changes:
=
debian/control
=
@@ -13,7 +13,7 @@ Build-Depends: debhelper-compat (= 13),
python3-pip,
python3-pytest,
python3-cykhash (>= 2.0.0-3),
- python3-hmmlearn (>= 0.3.0-3),
+ python3-hmmlearn (>= 0.3.0-4~),
libsimde-dev,
cython3,
help2man,
@@ -28,7 +28,8 @@ Package: macs
Architecture: any
Depends: ${python3:Depends},
${shlibs:Depends},
- ${misc:Depends}
+ ${misc:Depends},
+ python3-hmmlearn (>= 0.3.0-4~)
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
View it on GitLab:
https://salsa.debian.org/med-team/macs/-/commit/1d1c7cedc0d230f721e8752f797822f328f26b32
--
View it on GitLab:
https://salsa.debian.org/med-team/macs/-/commit/1d1c7cedc0d230f721e8752f797822f328f26b32
You're receiving this email because of your account on salsa.debian.org.
___
debian-med-commit mailing list
debian-med-com...@alioth-lists.debian.net
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-awkward][master] do not rename object files
Sascha Steinbiss pushed to branch master at Debian Med / python-awkward Commits: 1de0f0d7 by Sascha Steinbiss at 2024-02-19T15:56:48+01:00 do not rename object files - - - - - 1 changed file: - debian/rules Changes: = debian/rules = @@ -21,5 +21,8 @@ override_dh_auto_build: override_dh_install: dh_install --sourcedir=debian/tmp_i_mean_it +override_dh_python3: + dh_python3 --no-ext-rename /usr/lib/python3/dist-packages/awkward_cpp/lib/* + override_dh_auto_test: # pass View it on GitLab: https://salsa.debian.org/med-team/python-awkward/-/commit/1de0f0d72b215785340b6078f40c721a09f9aa1d -- View it on GitLab: https://salsa.debian.org/med-team/python-awkward/-/commit/1de0f0d72b215785340b6078f40c721a09f9aa1d You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-dnaio] Pushed new tag debian/1.2.0-1
Lance Lin pushed new tag debian/1.2.0-1 at Debian Med / python-dnaio -- View it on GitLab: https://salsa.debian.org/med-team/python-dnaio/-/tree/debian/1.2.0-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-dnaio][master] Upload to unstable
Lance Lin pushed to branch master at Debian Med / python-dnaio Commits: 955beb81 by Lance Lin at 2024-02-19T19:47:48+07:00 Upload to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = @@ -1,11 +1,11 @@ -python-dnaio (1.2.0-1) UNRELEASED; urgency=medium +python-dnaio (1.2.0-1) unstable; urgency=medium * Team upload. * New upstream version * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * Replace override_dh_auto_clean in d/rules with d/clean listing removals - -- Lance Lin Fri, 16 Feb 2024 19:36:59 +0700 + -- Lance Lin Mon, 19 Feb 2024 19:47:24 +0700 python-dnaio (1.0.1-1) unstable; urgency=medium View it on GitLab: https://salsa.debian.org/med-team/python-dnaio/-/commit/955beb810985e8d5dea5a04ee75a6accd53d2118 -- View it on GitLab: https://salsa.debian.org/med-team/python-dnaio/-/commit/955beb810985e8d5dea5a04ee75a6accd53d2118 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igraph] Pushed new tag debian/0.10.10+ds-1_bpo12+1
Jérôme Benoit pushed new tag debian/0.10.10+ds-1_bpo12+1 at Debian Med / igraph -- View it on GitLab: https://salsa.debian.org/med-team/igraph/-/tree/debian/0.10.10+ds-1_bpo12+1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/igraph][bookworm-backports] 19 commits: As per https://github.com/igraph/igraph/issues/2450 we ignore random failures on mips64el
Jérôme Benoit pushed to branch bookworm-backports at Debian Med / igraph Commits: 32039ac7 by Andreas Tille at 2023-12-11T13:21:22+01:00 As per https://github.com/igraph/igraph/issues/2450 we ignore random failures on mips64el - - - - - 159b51ab by Andreas Tille at 2023-12-11T13:21:37+01:00 routine-update: No tab in license text - - - - - df8fb396 by Andreas Tille at 2023-12-11T13:41:52+01:00 routine-update: Ready to upload to unstable - - - - - 13b69ce7 by Jerome Benoit at 2024-02-04T22:39:33+01:00 New upstream version 0.10.9 - - - - - e43f23df by Jerome Benoit at 2024-02-04T22:39:45+01:00 Update upstream source from tag 'upstream/0.10.9' Update to upstream version '0.10.9' with Debian dir cf9124cc31758ca931e75a64b78f2166bde53596 - - - - - 0b8a02d3 by Jerome Benoit at 2024-02-04T22:40:29+01:00 New upstream version 0.10.9+ds - - - - - 56440534 by Jerome Benoit at 2024-02-04T22:40:33+01:00 Update upstream source from tag 'upstream/0.10.9+ds' Update to upstream version '0.10.9+ds' with Debian dir cf9124cc31758ca931e75a64b78f2166bde53596 - - - - - 74a557e4 by Jerome Benoit at 2024-02-05T00:20:15+01:00 Debian patch 0.10.9+ds-1 - - - - - 716f8bda by Jerome Benoit at 2024-02-10T22:46:35+01:00 Debian patch 0.10.9+ds-2 - - - - - d8eea402 by Aymeric Agon-Rambosson at 2024-02-13T17:39:12+01:00 Update file references inside info file to match rename - - - - - 417c7c12 by Andreas Tille at 2024-02-13T18:21:39+01:00 Create changelog entry for MR - - - - - e9aa6924 by Andreas Tille at 2024-02-13T18:22:07+01:00 New upstream version 0.10.10+ds - - - - - e65eba0c by Andreas Tille at 2024-02-13T18:22:07+01:00 routine-update: New upstream version - - - - - a7db3aca by Andreas Tille at 2024-02-13T18:22:12+01:00 Update upstream source from tag 'upstream/0.10.10+ds' Update to upstream version '0.10.10+ds' with Debian dir 99cad0f77d2422713fb823c2bf091f0aab4297b2 - - - - - e146dd4f by Andreas Tille at 2024-02-13T18:30:20+01:00 Update patches - - - - - f94a6db0 by Andreas Tille at 2024-02-13T20:11:08+01:00 Update symbols file - - - - - 627fa7f8 by Andreas Tille at 2024-02-13T20:30:21+01:00 Upload to unstable - - - - - 0dee9ead by Jerome Benoit at 2024-02-19T11:34:17+01:00 Import from main branch - - - - - c7d15978 by Jerome Benoit at 2024-02-19T11:35:04+01:00 Debian patch 0.10.10+ds-1~bpo12+1) - - - - - 30 changed files: - CHANGELOG.md - CONTRIBUTORS.md - CONTRIBUTORS.txt - IGRAPH_VERSION - debian/changelog - debian/control - debian/copyright - + debian/libigraph-doc.info - debian/libigraph3.symbols - debian/rules - doc/CMakeLists.txt - doc/generators.xxml - doc/installation.xml - doc/structural.xxml - etc/cmake/dependencies.cmake - etc/cmake/summary.cmake - examples/simple/cattributes.c - examples/simple/even_tarjan.c - + examples/simple/igraph_is_biconnected.c - + examples/simple/igraph_is_biconnected.out - examples/simple/igraph_strvector.c - include/igraph_community.h - include/igraph_components.h - include/igraph_constructors.h - include/igraph_decls.h - include/igraph_dqueue_pmt.h - include/igraph_error.h - include/igraph_heap_pmt.h - include/igraph_interface.h - include/igraph_iterators.h The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/igraph/-/compare/e6777d53f4c28984b4af46b6d0beae4b91ae3662...c7d159785dcefc85b76230fcefcafb3312fdd37e -- View it on GitLab: https://salsa.debian.org/med-team/igraph/-/compare/e6777d53f4c28984b4af46b6d0beae4b91ae3662...c7d159785dcefc85b76230fcefcafb3312fdd37e You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [Git][med-team/python-hmmlearn] Pushed new tag debian/0.3.0-4
Andreas Tille pushed new tag debian/0.3.0-4 at Debian Med / python-hmmlearn -- View it on GitLab: https://salsa.debian.org/med-team/python-hmmlearn/-/tree/debian/0.3.0-4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
