[med-svn] r19342 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2015-06-17 15:45:36 + (Wed, 17 Jun 2015) New Revision: 19342 Modified: trunk/packages/metastudent-data/trunk/debian/changelog Log: updated changelog Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-17 15:18:10 UTC (rev 19341) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-17 15:45:36 UTC (rev 19342) @@ -1,4 +1,4 @@ -metastudent-data (2.0.0-3) unstable; urgency=medium +metastudent-data (2.0.1-1) unstable; urgency=medium * Removed dependency on metastudent (>= 2.0.0) ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19341 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2015-06-17 15:18:10 + (Wed, 17 Jun 2015) New Revision: 19341 Modified: trunk/packages/metastudent-data/trunk/debian/changelog Log: * updated changes Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-16 21:51:15 UTC (rev 19340) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-17 15:18:10 UTC (rev 19341) @@ -1,9 +1,3 @@ -metastudent-data (2.0.0-4) UNRELEASED; urgency=medium - - * NOT RELEASED YET - - -- Tobias Hamp Mon, 15 Jun 2015 18:59:53 +0200 - metastudent-data (2.0.0-3) unstable; urgency=medium * Removed dependency on metastudent (>= 2.0.0) ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19336 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2015-06-15 17:03:47 + (Mon, 15 Jun 2015) New Revision: 19336 Modified: trunk/packages/metastudent-data/trunk/debian/changelog Log: * Changed weekday Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-15 16:59:52 UTC (rev 19335) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-15 17:03:47 UTC (rev 19336) @@ -1,3 +1,9 @@ +metastudent-data (2.0.0-4) UNRELEASED; urgency=medium + + * NOT RELEASED YET + + -- Tobias Hamp Mon, 15 Jun 2015 18:59:53 +0200 + metastudent-data (2.0.0-3) unstable; urgency=medium * Removed dependency on metastudent (>= 2.0.0) @@ -2,3 +8,3 @@ - -- Tobias Hamp Wed, 15 Jun 2015 17:23:36 +0200 + -- Tobias Hamp Mon, 15 Jun 2015 17:23:36 +0200 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19335 - in trunk/packages/metastudent-data/tags: . 2.0.0-3 2.0.0-3/debian
Author: hampt-guest
Date: 2015-06-15 16:59:52 + (Mon, 15 Jun 2015)
New Revision: 19335
Added:
trunk/packages/metastudent-data/tags/2.0.0-3/
trunk/packages/metastudent-data/tags/2.0.0-3/debian/
trunk/packages/metastudent-data/tags/2.0.0-3/debian/changelog
trunk/packages/metastudent-data/tags/2.0.0-3/debian/control
Removed:
trunk/packages/metastudent-data/tags/2.0.0-3/debian/
trunk/packages/metastudent-data/tags/2.0.0-3/debian/changelog
trunk/packages/metastudent-data/tags/2.0.0-3/debian/control
Log:
[svn-buildpackage] Tagging metastudent-data 2.0.0-3
Deleted: trunk/packages/metastudent-data/tags/2.0.0-3/debian/changelog
===
--- trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-15
15:51:23 UTC (rev 19331)
+++ trunk/packages/metastudent-data/tags/2.0.0-3/debian/changelog
2015-06-15 16:59:52 UTC (rev 19335)
@@ -1,23 +0,0 @@
-metastudent-data (2.0.0-2) unstable; urgency=medium
-
- * Changes to changelog
-
- -- Tobias Hamp Sun, 12 Apr 2015 17:58:47 +0200
-
-metastudent-data (2.0.0-1) unstable; urgency=low
-
- * Fully updated and extended all data
-
- -- Tobias Hamp Sat, 14 Mar 2015 00:43:57 +0200
-
-metastudent-data (1.0.1-2) unstable; urgency=low
-
- * Added missing build dependency rsync (Closes: #708715)
-
- -- Laszlo Kajan Wed, 08 May 2013 17:42:14 +0200
-
-metastudent-data (1.0.1-1) unstable; urgency=low
-
- * Initial release (Closes: #705537)
-
- -- Tobias Hamp Fri, 26 Apr 2013 07:43:57 +0200
Copied: trunk/packages/metastudent-data/tags/2.0.0-3/debian/changelog (from rev
19334, trunk/packages/metastudent-data/trunk/debian/changelog)
===
--- trunk/packages/metastudent-data/tags/2.0.0-3/debian/changelog
(rev 0)
+++ trunk/packages/metastudent-data/tags/2.0.0-3/debian/changelog
2015-06-15 16:59:52 UTC (rev 19335)
@@ -0,0 +1,29 @@
+metastudent-data (2.0.0-3) unstable; urgency=medium
+
+ * Removed dependency on metastudent (>= 2.0.0)
+
+ -- Tobias Hamp Wed, 15 Jun 2015 17:23:36 +0200
+
+metastudent-data (2.0.0-2) unstable; urgency=medium
+
+ * Changes to changelog
+
+ -- Tobias Hamp Sun, 12 Apr 2015 17:58:47 +0200
+
+metastudent-data (2.0.0-1) unstable; urgency=low
+
+ * Fully updated and extended all data
+
+ -- Tobias Hamp Sat, 14 Mar 2015 00:43:57 +0200
+
+metastudent-data (1.0.1-2) unstable; urgency=low
+
+ * Added missing build dependency rsync (Closes: #708715)
+
+ -- Laszlo Kajan Wed, 08 May 2013 17:42:14 +0200
+
+metastudent-data (1.0.1-1) unstable; urgency=low
+
+ * Initial release (Closes: #705537)
+
+ -- Tobias Hamp Fri, 26 Apr 2013 07:43:57 +0200
Deleted: trunk/packages/metastudent-data/tags/2.0.0-3/debian/control
===
--- trunk/packages/metastudent-data/trunk/debian/control2015-06-15
15:51:23 UTC (rev 19331)
+++ trunk/packages/metastudent-data/tags/2.0.0-3/debian/control 2015-06-15
16:59:52 UTC (rev 19335)
@@ -1,27 +0,0 @@
-Source: metastudent-data
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team
-Uploaders: Tobias Hamp , Laszlo Kajan
-Build-Depends-Indep: blast2, debhelper (>=8~), rsync
-Standards-Version: 3.9.6
-Homepage: https://rostlab.org/owiki/index.php/Metastudent
-Vcs-Svn:
svn://anonscm.debian.org/debian-med/trunk/packages/metastudent-data/trunk/
-Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/metastudent-data/trunk/
-
-Package: metastudent-data
-Architecture: all
-Homepage: http://www.rostlab.org
-Pre-Depends: dpkg (>= 1.15.6~)
-Depends: ${misc:Depends}, metastudent (>= 2.0.0)
-Breaks: metastudent (<< 2.0.0)
-Description: predictor of Gene Ontology terms from protein sequence - data
files
- Often, only the sequence of a protein is known, but
- not its functions. Metastudent will try to predict
- missing functional annotations through homology searches (BLAST).
- .
- All predicted functions correspond to Gene Ontology (GO)
- terms from the Molecular Function Ontology (MFO) and the Biological Process
- Ontology (BPO) and are associated with a reliability score.
- .
- This package contains data files for metastudent.
Copied: trunk/packages/metastudent-data/tags/2.0.0-3/debian/control (from rev
19332, trunk/packages/metastudent-data/trunk/debian/control)
===
--- trunk/packages/metastudent-data/tags/2.0.0-3/debian/control
(rev 0)
+++ trunk/packages/metastudent-data/tags/2.0.0-3/debian/control 2015-06-15
16:59:52 UTC (rev 19335)
@@ -0,0 +1,27 @@
+Source: metastudent-data
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team
+Uploaders: Tobias Hamp , Laszlo Kajan
+Build-Depends-Indep: blast2, debhelper (>=8~), rsync
+Standards-Version: 3.9.6
+Homepage: https://rostlab.org/owiki/index
[med-svn] r19333 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2015-06-15 16:42:20 + (Mon, 15 Jun 2015) New Revision: 19333 Modified: trunk/packages/metastudent-data/trunk/debian/changelog Log: * Updated version Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-15 16:06:39 UTC (rev 19332) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-15 16:42:20 UTC (rev 19333) @@ -1,15 +1,9 @@ -metastudent-data (2.0.0-4) UNRELEASED; urgency=medium +metastudent-data (2.0.0-3) UNRELEASED; urgency=medium * Removed dependency on metastudent (>= 2.0.0) -- Tobias Hamp Wed, 15 Jun 2015 17:23:36 +0200 -metastudent-data (2.0.0-3) unstable; urgency=medium - - * NOT RELEASED YET - - -- Tobias Hamp Wed, 22 Apr 2015 12:21:16 +0200 - metastudent-data (2.0.0-2) unstable; urgency=medium * Changes to changelog ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19334 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2015-06-15 16:44:51 + (Mon, 15 Jun 2015) New Revision: 19334 Modified: trunk/packages/metastudent-data/trunk/debian/changelog Log: * release type update Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-15 16:42:20 UTC (rev 19333) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-15 16:44:51 UTC (rev 19334) @@ -1,4 +1,4 @@ -metastudent-data (2.0.0-3) UNRELEASED; urgency=medium +metastudent-data (2.0.0-3) unstable; urgency=medium * Removed dependency on metastudent (>= 2.0.0) ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19332 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest
Date: 2015-06-15 16:06:39 + (Mon, 15 Jun 2015)
New Revision: 19332
Modified:
trunk/packages/metastudent-data/trunk/debian/changelog
trunk/packages/metastudent-data/trunk/debian/control
Log:
* removed dependency on metastudent (>= 2.0.0)
Modified: trunk/packages/metastudent-data/trunk/debian/changelog
===
--- trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-15
15:51:23 UTC (rev 19331)
+++ trunk/packages/metastudent-data/trunk/debian/changelog 2015-06-15
16:06:39 UTC (rev 19332)
@@ -1,3 +1,15 @@
+metastudent-data (2.0.0-4) UNRELEASED; urgency=medium
+
+ * Removed dependency on metastudent (>= 2.0.0)
+
+ -- Tobias Hamp Wed, 15 Jun 2015 17:23:36 +0200
+
+metastudent-data (2.0.0-3) unstable; urgency=medium
+
+ * NOT RELEASED YET
+
+ -- Tobias Hamp Wed, 22 Apr 2015 12:21:16 +0200
+
metastudent-data (2.0.0-2) unstable; urgency=medium
* Changes to changelog
Modified: trunk/packages/metastudent-data/trunk/debian/control
===
--- trunk/packages/metastudent-data/trunk/debian/control2015-06-15
15:51:23 UTC (rev 19331)
+++ trunk/packages/metastudent-data/trunk/debian/control2015-06-15
16:06:39 UTC (rev 19332)
@@ -13,7 +13,7 @@
Architecture: all
Homepage: http://www.rostlab.org
Pre-Depends: dpkg (>= 1.15.6~)
-Depends: ${misc:Depends}, metastudent (>= 2.0.0)
+Depends: ${misc:Depends}
Breaks: metastudent (<< 2.0.0)
Description: predictor of Gene Ontology terms from protein sequence - data
files
Often, only the sequence of a protein is known, but
___
debian-med-commit mailing list
debian-med-commit@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19106 - trunk/packages/metastudent/tags
Author: hampt-guest Date: 2015-04-23 23:13:44 + (Thu, 23 Apr 2015) New Revision: 19106 Removed: trunk/packages/metastudent/tags/2.0.1-1/ Log: [svn-buildpackage] Removing old tag metastudent-2.0.1-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19107 - in trunk/packages/metastudent/tags: . 2.0.1-1/debian
Author: hampt-guest
Date: 2015-04-23 23:13:45 + (Thu, 23 Apr 2015)
New Revision: 19107
Added:
trunk/packages/metastudent/tags/2.0.1-1/
trunk/packages/metastudent/tags/2.0.1-1/debian/changelog
trunk/packages/metastudent/tags/2.0.1-1/debian/control
Removed:
trunk/packages/metastudent/tags/2.0.1-1/debian/changelog
trunk/packages/metastudent/tags/2.0.1-1/debian/control
Log:
[svn-buildpackage] Tagging metastudent 2.0.1-1
Deleted: trunk/packages/metastudent/tags/2.0.1-1/debian/changelog
===
--- trunk/packages/metastudent/trunk/debian/changelog 2015-04-09 00:35:49 UTC
(rev 19035)
+++ trunk/packages/metastudent/tags/2.0.1-1/debian/changelog2015-04-23
23:13:45 UTC (rev 19107)
@@ -1,54 +0,0 @@
-metastudent (2.0.1-1) unstable; urgency=low
-
- * fixed setup.py
-
- -- Tobias Hamp Fri, 20 Mar 2015 20:08:05 +0200
-
-metastudent (2.0.0-1) UNRELEASED; urgency=low
-
- * Added Cellular Component Ontology
- * Updated GO annotations databases
- * Updated Gene Ontology
- * Predictions are now fully propagated to the root
- * Updated URL for image generation
-
- -- Tobias Hamp Fri, 20 Mar 2015 19:08:05 +0200
-
-metastudent (1.0.11-2) unstable; urgency=medium
-
- * Fixed VCS URL.
- * Fixed python2 dependency handling.
-
- -- Laszlo Kajan Sun, 14 Sep 2014 11:08:05 +0200
-
-metastudent (1.0.11-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Tobias Hamp Fri, 13 Dec 2013 09:21:18 +0200
-
-metastudent (1.0.10-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Tobias Hamp Sat, 08 Jun 2013 17:41:08 +0200
-
-metastudent (1.0.9-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Tobias Hamp Wed, 05 Jun 2013 16:41:08 +0200
-
-metastudent (1.0.8-2) unstable; urgency=low
-
- * This version depends on data packaged as metastudent-data.
-
- -- Laszlo Kajan Wed, 08 May 2013 17:23:51 +0200
-
-metastudent (1.0.8-1) unstable; urgency=low
-
- * Initial release (Closes: #705537)
- [Laszlo Kajan ]
- * Added BMC Bioinfo paper to d/upstream.
-
- -- Tobias Hamp Mon, 15 Apr 2013 12:08:13 +0100
Copied: trunk/packages/metastudent/tags/2.0.1-1/debian/changelog (from rev
19104, trunk/packages/metastudent/trunk/debian/changelog)
===
--- trunk/packages/metastudent/tags/2.0.1-1/debian/changelog
(rev 0)
+++ trunk/packages/metastudent/tags/2.0.1-1/debian/changelog2015-04-23
23:13:45 UTC (rev 19107)
@@ -0,0 +1,49 @@
+metastudent (2.0.1-1) unstable; urgency=low
+
+ * Added Cellular Component Ontology
+ * Updated GO annotations databases
+ * Updated Gene Ontology
+ * Predictions are now fully propagated to the root
+ * Updated URL for image generation
+ * fixed setup.py
+
+ -- Tobias Hamp Fri, 20 Mar 2015 19:08:05 +0200
+
+metastudent (1.0.11-2) unstable; urgency=medium
+
+ * Fixed VCS URL.
+ * Fixed python2 dependency handling.
+
+ -- Laszlo Kajan Sun, 14 Sep 2014 11:08:05 +0200
+
+metastudent (1.0.11-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp Fri, 13 Dec 2013 09:21:18 +0200
+
+metastudent (1.0.10-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp Sat, 08 Jun 2013 17:41:08 +0200
+
+metastudent (1.0.9-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp Wed, 05 Jun 2013 16:41:08 +0200
+
+metastudent (1.0.8-2) unstable; urgency=low
+
+ * This version depends on data packaged as metastudent-data.
+
+ -- Laszlo Kajan Wed, 08 May 2013 17:23:51 +0200
+
+metastudent (1.0.8-1) unstable; urgency=low
+
+ * Initial release (Closes: #705537)
+ [Laszlo Kajan ]
+ * Added BMC Bioinfo paper to d/upstream.
+
+ -- Tobias Hamp Mon, 15 Apr 2013 12:08:13 +0100
Deleted: trunk/packages/metastudent/tags/2.0.1-1/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2015-04-09 00:35:49 UTC
(rev 19035)
+++ trunk/packages/metastudent/tags/2.0.1-1/debian/control 2015-04-23
23:13:45 UTC (rev 19107)
@@ -1,40 +0,0 @@
-Source: metastudent
-Maintainer: Debian Med Packaging Team
-Uploaders: Tobias Hamp ,
- Laszlo Kajan
-Section: science
-Priority: optional
-Build-Depends-Indep: debhelper (>=9~),
- dh-python,
- python (>= 2.6),
- javahelper,
- default-jdk
-Standards-Version: 3.9.6
-Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/metastudent/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/metastudent/trunk/
-Homepage: https://rostlab.org/owiki/index.php/Metastudent
-X-Python-Version: >= 2.6
-
-Package: metastudent
-Architecture: all
-Depends: ${misc:Depends},
- ${perl:Depends},
- ${python:Depends},
- python (>= 2.6),
- blast2,
- default-jre,
- libgo-perl,
- lib
[med-svn] r19105 - in trunk/packages/metastudent/tags: . 2.0.1-1/debian
Author: hampt-guest
Date: 2015-04-23 23:05:32 + (Thu, 23 Apr 2015)
New Revision: 19105
Added:
trunk/packages/metastudent/tags/2.0.1-1/
trunk/packages/metastudent/tags/2.0.1-1/debian/changelog
trunk/packages/metastudent/tags/2.0.1-1/debian/control
Removed:
trunk/packages/metastudent/tags/2.0.1-1/debian/changelog
trunk/packages/metastudent/tags/2.0.1-1/debian/control
Log:
[svn-buildpackage] Tagging metastudent 2.0.1-1
Deleted: trunk/packages/metastudent/tags/2.0.1-1/debian/changelog
===
--- trunk/packages/metastudent/trunk/debian/changelog 2015-04-09 00:35:49 UTC
(rev 19035)
+++ trunk/packages/metastudent/tags/2.0.1-1/debian/changelog2015-04-23
23:05:32 UTC (rev 19105)
@@ -1,54 +0,0 @@
-metastudent (2.0.1-1) unstable; urgency=low
-
- * fixed setup.py
-
- -- Tobias Hamp Fri, 20 Mar 2015 20:08:05 +0200
-
-metastudent (2.0.0-1) UNRELEASED; urgency=low
-
- * Added Cellular Component Ontology
- * Updated GO annotations databases
- * Updated Gene Ontology
- * Predictions are now fully propagated to the root
- * Updated URL for image generation
-
- -- Tobias Hamp Fri, 20 Mar 2015 19:08:05 +0200
-
-metastudent (1.0.11-2) unstable; urgency=medium
-
- * Fixed VCS URL.
- * Fixed python2 dependency handling.
-
- -- Laszlo Kajan Sun, 14 Sep 2014 11:08:05 +0200
-
-metastudent (1.0.11-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Tobias Hamp Fri, 13 Dec 2013 09:21:18 +0200
-
-metastudent (1.0.10-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Tobias Hamp Sat, 08 Jun 2013 17:41:08 +0200
-
-metastudent (1.0.9-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Tobias Hamp Wed, 05 Jun 2013 16:41:08 +0200
-
-metastudent (1.0.8-2) unstable; urgency=low
-
- * This version depends on data packaged as metastudent-data.
-
- -- Laszlo Kajan Wed, 08 May 2013 17:23:51 +0200
-
-metastudent (1.0.8-1) unstable; urgency=low
-
- * Initial release (Closes: #705537)
- [Laszlo Kajan ]
- * Added BMC Bioinfo paper to d/upstream.
-
- -- Tobias Hamp Mon, 15 Apr 2013 12:08:13 +0100
Copied: trunk/packages/metastudent/tags/2.0.1-1/debian/changelog (from rev
19104, trunk/packages/metastudent/trunk/debian/changelog)
===
--- trunk/packages/metastudent/tags/2.0.1-1/debian/changelog
(rev 0)
+++ trunk/packages/metastudent/tags/2.0.1-1/debian/changelog2015-04-23
23:05:32 UTC (rev 19105)
@@ -0,0 +1,49 @@
+metastudent (2.0.1-1) unstable; urgency=low
+
+ * Added Cellular Component Ontology
+ * Updated GO annotations databases
+ * Updated Gene Ontology
+ * Predictions are now fully propagated to the root
+ * Updated URL for image generation
+ * fixed setup.py
+
+ -- Tobias Hamp Fri, 20 Mar 2015 19:08:05 +0200
+
+metastudent (1.0.11-2) unstable; urgency=medium
+
+ * Fixed VCS URL.
+ * Fixed python2 dependency handling.
+
+ -- Laszlo Kajan Sun, 14 Sep 2014 11:08:05 +0200
+
+metastudent (1.0.11-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp Fri, 13 Dec 2013 09:21:18 +0200
+
+metastudent (1.0.10-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp Sat, 08 Jun 2013 17:41:08 +0200
+
+metastudent (1.0.9-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp Wed, 05 Jun 2013 16:41:08 +0200
+
+metastudent (1.0.8-2) unstable; urgency=low
+
+ * This version depends on data packaged as metastudent-data.
+
+ -- Laszlo Kajan Wed, 08 May 2013 17:23:51 +0200
+
+metastudent (1.0.8-1) unstable; urgency=low
+
+ * Initial release (Closes: #705537)
+ [Laszlo Kajan ]
+ * Added BMC Bioinfo paper to d/upstream.
+
+ -- Tobias Hamp Mon, 15 Apr 2013 12:08:13 +0100
Deleted: trunk/packages/metastudent/tags/2.0.1-1/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2015-04-09 00:35:49 UTC
(rev 19035)
+++ trunk/packages/metastudent/tags/2.0.1-1/debian/control 2015-04-23
23:05:32 UTC (rev 19105)
@@ -1,40 +0,0 @@
-Source: metastudent
-Maintainer: Debian Med Packaging Team
-Uploaders: Tobias Hamp ,
- Laszlo Kajan
-Section: science
-Priority: optional
-Build-Depends-Indep: debhelper (>=9~),
- dh-python,
- python (>= 2.6),
- javahelper,
- default-jdk
-Standards-Version: 3.9.6
-Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/metastudent/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/metastudent/trunk/
-Homepage: https://rostlab.org/owiki/index.php/Metastudent
-X-Python-Version: >= 2.6
-
-Package: metastudent
-Architecture: all
-Depends: ${misc:Depends},
- ${perl:Depends},
- ${python:Depends},
- python (>= 2.6),
- blast2,
- default-jre,
- libgo-perl,
- lib
[med-svn] r19104 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-04-23 23:03:07 + (Thu, 23 Apr 2015) New Revision: 19104 Modified: trunk/packages/metastudent/trunk/debian/changelog Log: * Fixed changelog Modified: trunk/packages/metastudent/trunk/debian/changelog === --- trunk/packages/metastudent/trunk/debian/changelog 2015-04-23 23:02:02 UTC (rev 19103) +++ trunk/packages/metastudent/trunk/debian/changelog 2015-04-23 23:03:07 UTC (rev 19104) @@ -1,4 +1,4 @@ -metastudent (2.0.0-1) unstable; urgency=low +metastudent (2.0.1-1) unstable; urgency=low * Added Cellular Component Ontology * Updated GO annotations databases ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19103 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-04-23 23:02:02 + (Thu, 23 Apr 2015) New Revision: 19103 Modified: trunk/packages/metastudent/trunk/debian/changelog Log: * fixed changelog Modified: trunk/packages/metastudent/trunk/debian/changelog === --- trunk/packages/metastudent/trunk/debian/changelog 2015-04-23 23:01:25 UTC (rev 19102) +++ trunk/packages/metastudent/trunk/debian/changelog 2015-04-23 23:02:02 UTC (rev 19103) @@ -1,4 +1,4 @@ -metastudent (2.0.0-1) UNRELEASED; urgency=low +metastudent (2.0.0-1) unstable; urgency=low * Added Cellular Component Ontology * Updated GO annotations databases ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19102 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-04-23 23:01:25 + (Thu, 23 Apr 2015) New Revision: 19102 Modified: trunk/packages/metastudent/trunk/debian/changelog trunk/packages/metastudent/trunk/debian/control Log: * Merged changelog * Added dependency in data 2.0 Modified: trunk/packages/metastudent/trunk/debian/changelog === --- trunk/packages/metastudent/trunk/debian/changelog 2015-04-23 08:59:51 UTC (rev 19101) +++ trunk/packages/metastudent/trunk/debian/changelog 2015-04-23 23:01:25 UTC (rev 19102) @@ -1,9 +1,3 @@ -metastudent (2.0.1-1) unstable; urgency=low - - * fixed setup.py - - -- Tobias Hamp Fri, 20 Mar 2015 20:08:05 +0200 - metastudent (2.0.0-1) UNRELEASED; urgency=low * Added Cellular Component Ontology @@ -11,6 +5,7 @@ * Updated Gene Ontology * Predictions are now fully propagated to the root * Updated URL for image generation + * fixed setup.py -- Tobias Hamp Fri, 20 Mar 2015 19:08:05 +0200 Modified: trunk/packages/metastudent/trunk/debian/control === --- trunk/packages/metastudent/trunk/debian/control 2015-04-23 08:59:51 UTC (rev 19101) +++ trunk/packages/metastudent/trunk/debian/control 2015-04-23 23:01:25 UTC (rev 19102) @@ -27,7 +27,7 @@ libipc-run-perl, libgraphviz-perl, libfile-chdir-perl, - metastudent-data + metastudent-data (>= 2.0.0) Description: predictor of Gene Ontology terms from protein sequence Often, only the sequence of a protein is known, but not its functions. Metastudent will try to predict ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19094 - in trunk/packages/metastudent-data/tags: . 2.0.0-2/debian
Author: hampt-guest Date: 2015-04-22 10:21:13 + (Wed, 22 Apr 2015) New Revision: 19094 Added: trunk/packages/metastudent-data/tags/2.0.0-2/ trunk/packages/metastudent-data/tags/2.0.0-2/debian/changelog Removed: trunk/packages/metastudent-data/tags/2.0.0-2/debian/changelog Log: [svn-buildpackage] Tagging metastudent-data 2.0.0-2 Deleted: trunk/packages/metastudent-data/tags/2.0.0-2/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2015-04-21 19:51:07 UTC (rev 19090) +++ trunk/packages/metastudent-data/tags/2.0.0-2/debian/changelog 2015-04-22 10:21:13 UTC (rev 19094) @@ -1,23 +0,0 @@ -metastudent-data (2.0.0-2) UNRELEASED; urgency=medium - - * NOT RELEASED YET - - -- Tobias Hamp Sun, 12 Apr 2015 17:58:47 +0200 - -metastudent-data (2.0.0-1) unstable; urgency=low - - * Fully updated and extended all data - - -- Tobias Hamp Sat, 14 Mar 2015 00:43:57 +0200 - -metastudent-data (1.0.1-2) unstable; urgency=low - - * Added missing build dependency rsync (Closes: #708715) - - -- Laszlo Kajan Wed, 08 May 2013 17:42:14 +0200 - -metastudent-data (1.0.1-1) unstable; urgency=low - - * Initial release (Closes: #705537) - - -- Tobias Hamp Fri, 26 Apr 2013 07:43:57 +0200 Copied: trunk/packages/metastudent-data/tags/2.0.0-2/debian/changelog (from rev 19091, trunk/packages/metastudent-data/trunk/debian/changelog) === --- trunk/packages/metastudent-data/tags/2.0.0-2/debian/changelog (rev 0) +++ trunk/packages/metastudent-data/tags/2.0.0-2/debian/changelog 2015-04-22 10:21:13 UTC (rev 19094) @@ -0,0 +1,23 @@ +metastudent-data (2.0.0-2) unstable; urgency=medium + + * Changes to changelog + + -- Tobias Hamp Sun, 12 Apr 2015 17:58:47 +0200 + +metastudent-data (2.0.0-1) unstable; urgency=low + + * Fully updated and extended all data + + -- Tobias Hamp Sat, 14 Mar 2015 00:43:57 +0200 + +metastudent-data (1.0.1-2) unstable; urgency=low + + * Added missing build dependency rsync (Closes: #708715) + + -- Laszlo Kajan Wed, 08 May 2013 17:42:14 +0200 + +metastudent-data (1.0.1-1) unstable; urgency=low + + * Initial release (Closes: #705537) + + -- Tobias Hamp Fri, 26 Apr 2013 07:43:57 +0200 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19091 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2015-04-21 21:03:28 + (Tue, 21 Apr 2015) New Revision: 19091 Modified: trunk/packages/metastudent-data/trunk/debian/changelog Log: Changed changelog (changed UNRELEASED tag) Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2015-04-21 19:51:07 UTC (rev 19090) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2015-04-21 21:03:28 UTC (rev 19091) @@ -1,6 +1,6 @@ -metastudent-data (2.0.0-2) UNRELEASED; urgency=medium +metastudent-data (2.0.0-2) unstable; urgency=medium - * NOT RELEASED YET + * Changes to changelog -- Tobias Hamp Sun, 12 Apr 2015 17:58:47 +0200 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19040 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2015-04-12 15:59:49 + (Sun, 12 Apr 2015) New Revision: 19040 Modified: trunk/packages/metastudent-data/trunk/debian/changelog Log: tagged Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2015-04-12 15:58:46 UTC (rev 19039) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2015-04-12 15:59:49 UTC (rev 19040) @@ -1,3 +1,9 @@ +metastudent-data (2.0.0-2) UNRELEASED; urgency=medium + + * NOT RELEASED YET + + -- Tobias Hamp Sun, 12 Apr 2015 17:58:47 +0200 + metastudent-data (2.0.0-1) unstable; urgency=low * Fully updated and extended all data ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19039 - in trunk/packages/metastudent-data/tags: . 2.0.0-1/debian
Author: hampt-guest
Date: 2015-04-12 15:58:46 + (Sun, 12 Apr 2015)
New Revision: 19039
Added:
trunk/packages/metastudent-data/tags/2.0.0-1/
trunk/packages/metastudent-data/tags/2.0.0-1/debian/control
Removed:
trunk/packages/metastudent-data/tags/2.0.0-1/debian/control
Log:
[svn-buildpackage] Tagging metastudent-data 2.0.0-1
Deleted: trunk/packages/metastudent-data/tags/2.0.0-1/debian/control
===
--- trunk/packages/metastudent-data/trunk/debian/control2015-04-08
15:19:40 UTC (rev 19034)
+++ trunk/packages/metastudent-data/tags/2.0.0-1/debian/control 2015-04-12
15:58:46 UTC (rev 19039)
@@ -1,26 +0,0 @@
-Source: metastudent-data
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team
-Uploaders: Tobias Hamp , Laszlo Kajan
-Build-Depends-Indep: blast2, debhelper (>=8~), rsync
-Standards-Version: 3.9.6
-Homepage: https://rostlab.org/owiki/index.php/Metastudent
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/metastudent-data/trunk/
-Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent-data/trunk/
-
-Package: metastudent-data
-Architecture: all
-Homepage: http://www.rostlab.org
-Pre-Depends: dpkg (>= 1.15.6~)
-Depends: ${misc:Depends}
-Description: predictor of Gene Ontology terms from protein sequence - data
files
- Often, only the sequence of a protein is known, but
- not its functions. Metastudent will try to predict
- missing functional annotations through homology searches (BLAST).
- .
- All predicted functions correspond to Gene Ontology (GO)
- terms from the Molecular Function Ontology (MFO) and the Biological Process
- Ontology (BPO) and are associated with a reliability score.
- .
- This package contains data files for metastudent.
Copied: trunk/packages/metastudent-data/tags/2.0.0-1/debian/control (from rev
19038, trunk/packages/metastudent-data/trunk/debian/control)
===
--- trunk/packages/metastudent-data/tags/2.0.0-1/debian/control
(rev 0)
+++ trunk/packages/metastudent-data/tags/2.0.0-1/debian/control 2015-04-12
15:58:46 UTC (rev 19039)
@@ -0,0 +1,27 @@
+Source: metastudent-data
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team
+Uploaders: Tobias Hamp , Laszlo Kajan
+Build-Depends-Indep: blast2, debhelper (>=8~), rsync
+Standards-Version: 3.9.6
+Homepage: https://rostlab.org/owiki/index.php/Metastudent
+Vcs-Svn:
svn://anonscm.debian.org/debian-med/trunk/packages/metastudent-data/trunk/
+Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/metastudent-data/trunk/
+
+Package: metastudent-data
+Architecture: all
+Homepage: http://www.rostlab.org
+Pre-Depends: dpkg (>= 1.15.6~)
+Depends: ${misc:Depends}, metastudent (>= 2.0.0)
+Breaks: metastudent (<< 2.0.0)
+Description: predictor of Gene Ontology terms from protein sequence - data
files
+ Often, only the sequence of a protein is known, but
+ not its functions. Metastudent will try to predict
+ missing functional annotations through homology searches (BLAST).
+ .
+ All predicted functions correspond to Gene Ontology (GO)
+ terms from the Molecular Function Ontology (MFO) and the Biological Process
+ Ontology (BPO) and are associated with a reliability score.
+ .
+ This package contains data files for metastudent.
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[med-svn] r19038 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest
Date: 2015-04-12 15:30:16 + (Sun, 12 Apr 2015)
New Revision: 19038
Modified:
trunk/packages/metastudent-data/trunk/debian/control
Log:
bugfixes
Modified: trunk/packages/metastudent-data/trunk/debian/control
===
--- trunk/packages/metastudent-data/trunk/debian/control2015-04-12
12:28:13 UTC (rev 19037)
+++ trunk/packages/metastudent-data/trunk/debian/control2015-04-12
15:30:16 UTC (rev 19038)
@@ -13,8 +13,8 @@
Architecture: all
Homepage: http://www.rostlab.org
Pre-Depends: dpkg (>= 1.15.6~)
-Depends: ${misc:Depends}, metastudent-data (>= 2.0.0)
-Breaks: metastudent (< 2.0.0)
+Depends: ${misc:Depends}, metastudent (>= 2.0.0)
+Breaks: metastudent (<< 2.0.0)
Description: predictor of Gene Ontology terms from protein sequence - data
files
Often, only the sequence of a protein is known, but
not its functions. Metastudent will try to predict
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[med-svn] r19037 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest
Date: 2015-04-12 12:28:13 + (Sun, 12 Apr 2015)
New Revision: 19037
Modified:
trunk/packages/metastudent-data/trunk/debian/control
Log:
Added dependencies to metastudent version
Modified: trunk/packages/metastudent-data/trunk/debian/control
===
--- trunk/packages/metastudent-data/trunk/debian/control2015-04-09
15:51:02 UTC (rev 19036)
+++ trunk/packages/metastudent-data/trunk/debian/control2015-04-12
12:28:13 UTC (rev 19037)
@@ -13,7 +13,8 @@
Architecture: all
Homepage: http://www.rostlab.org
Pre-Depends: dpkg (>= 1.15.6~)
-Depends: ${misc:Depends}
+Depends: ${misc:Depends}, metastudent-data (>= 2.0.0)
+Breaks: metastudent (< 2.0.0)
Description: predictor of Gene Ontology terms from protein sequence - data
files
Often, only the sequence of a protein is known, but
not its functions. Metastudent will try to predict
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[med-svn] r19035 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2015-04-09 00:35:49 + (Thu, 09 Apr 2015) New Revision: 19035 Modified: trunk/packages/metastudent-data/trunk/debian/control Log: updated VCS field to canonical URIs Modified: trunk/packages/metastudent-data/trunk/debian/control === --- trunk/packages/metastudent-data/trunk/debian/control2015-04-08 15:19:40 UTC (rev 19034) +++ trunk/packages/metastudent-data/trunk/debian/control2015-04-09 00:35:49 UTC (rev 19035) @@ -6,8 +6,8 @@ Build-Depends-Indep: blast2, debhelper (>=8~), rsync Standards-Version: 3.9.6 Homepage: https://rostlab.org/owiki/index.php/Metastudent -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/metastudent-data/trunk/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent-data/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/metastudent-data/trunk/ +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/metastudent-data/trunk/ Package: metastudent-data Architecture: all ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19022 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest
Date: 2015-04-02 22:14:19 + (Thu, 02 Apr 2015)
New Revision: 19022
Modified:
trunk/packages/metastudent/trunk/debian/control
Log:
control debug
Modified: trunk/packages/metastudent/trunk/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2015-04-02 21:33:59 UTC
(rev 19021)
+++ trunk/packages/metastudent/trunk/debian/control 2015-04-02 22:14:19 UTC
(rev 19022)
@@ -19,6 +19,7 @@
Architecture: all
Depends: ${misc:Depends},
${perl:Depends},
+ ${python:Depends},
python (>= 2.6),
blast2,
default-jre,
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[med-svn] r19021 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest
Date: 2015-04-02 21:33:59 + (Thu, 02 Apr 2015)
New Revision: 19021
Modified:
trunk/packages/metastudent/trunk/debian/control
Log:
control debug
Modified: trunk/packages/metastudent/trunk/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2015-04-02 20:29:59 UTC
(rev 19020)
+++ trunk/packages/metastudent/trunk/debian/control 2015-04-02 21:33:59 UTC
(rev 19021)
@@ -6,7 +6,7 @@
Priority: optional
Build-Depends-Indep: debhelper (>=9~),
dh-python,
- python:any (>= 2.6),
+ python (>= 2.6),
javahelper,
default-jdk
Standards-Version: 3.9.6
@@ -19,8 +19,7 @@
Architecture: all
Depends: ${misc:Depends},
${perl:Depends},
- ${python:Depends},
- python:any (>= 2.6),
+ python (>= 2.6),
blast2,
default-jre,
libgo-perl,
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[med-svn] r19020 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest
Date: 2015-04-02 20:29:59 + (Thu, 02 Apr 2015)
New Revision: 19020
Modified:
trunk/packages/metastudent/trunk/debian/control
Log:
debug control
Modified: trunk/packages/metastudent/trunk/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2015-04-02 18:56:31 UTC
(rev 19019)
+++ trunk/packages/metastudent/trunk/debian/control 2015-04-02 20:29:59 UTC
(rev 19020)
@@ -6,7 +6,7 @@
Priority: optional
Build-Depends-Indep: debhelper (>=9~),
dh-python,
- python (>= 2.6),
+ python:any (>= 2.6),
javahelper,
default-jdk
Standards-Version: 3.9.6
@@ -20,7 +20,6 @@
Depends: ${misc:Depends},
${perl:Depends},
${python:Depends},
- python (>= 2.6),
python:any (>= 2.6),
blast2,
default-jre,
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[med-svn] r19019 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest
Date: 2015-04-02 18:56:31 + (Thu, 02 Apr 2015)
New Revision: 19019
Modified:
trunk/packages/metastudent/trunk/debian/control
Log:
debug control
Modified: trunk/packages/metastudent/trunk/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2015-04-02 18:39:44 UTC
(rev 19018)
+++ trunk/packages/metastudent/trunk/debian/control 2015-04-02 18:56:31 UTC
(rev 19019)
@@ -21,6 +21,7 @@
${perl:Depends},
${python:Depends},
python (>= 2.6),
+ python:any (>= 2.6),
blast2,
default-jre,
libgo-perl,
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[med-svn] r19018 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-04-02 18:39:44 + (Thu, 02 Apr 2015) New Revision: 19018 Modified: trunk/packages/metastudent/trunk/debian/control Log: corrected control Modified: trunk/packages/metastudent/trunk/debian/control === --- trunk/packages/metastudent/trunk/debian/control 2015-04-02 18:02:05 UTC (rev 19017) +++ trunk/packages/metastudent/trunk/debian/control 2015-04-02 18:39:44 UTC (rev 19018) @@ -6,7 +6,7 @@ Priority: optional Build-Depends-Indep: debhelper (>=9~), dh-python, - python, + python (>= 2.6), javahelper, default-jdk Standards-Version: 3.9.6 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19017 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest
Date: 2015-04-02 18:02:05 + (Thu, 02 Apr 2015)
New Revision: 19017
Modified:
trunk/packages/metastudent/trunk/debian/control
Log:
debug of control
Modified: trunk/packages/metastudent/trunk/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2015-04-02 16:48:02 UTC
(rev 19016)
+++ trunk/packages/metastudent/trunk/debian/control 2015-04-02 18:02:05 UTC
(rev 19017)
@@ -20,14 +20,14 @@
Depends: ${misc:Depends},
${perl:Depends},
${python:Depends},
- python,
+ python (>= 2.6),
blast2,
default-jre,
libgo-perl,
libipc-run-perl,
libgraphviz-perl,
libfile-chdir-perl,
- metastudent-data-3
+ metastudent-data
Description: predictor of Gene Ontology terms from protein sequence
Often, only the sequence of a protein is known, but
not its functions. Metastudent will try to predict
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[med-svn] r19016 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-04-02 16:48:02 + (Thu, 02 Apr 2015) New Revision: 19016 Modified: trunk/packages/metastudent/trunk/debian/control Log: Newer standards version Modified: trunk/packages/metastudent/trunk/debian/control === --- trunk/packages/metastudent/trunk/debian/control 2015-04-02 16:45:24 UTC (rev 19015) +++ trunk/packages/metastudent/trunk/debian/control 2015-04-02 16:48:02 UTC (rev 19016) @@ -9,7 +9,7 @@ python, javahelper, default-jdk -Standards-Version: 3.9.5 +Standards-Version: 3.9.6 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/metastudent/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/metastudent/trunk/ Homepage: https://rostlab.org/owiki/index.php/Metastudent ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19015 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-04-02 16:45:24 + (Thu, 02 Apr 2015) New Revision: 19015 Modified: trunk/packages/metastudent/trunk/debian/control Log: depence on dh-python Modified: trunk/packages/metastudent/trunk/debian/control === --- trunk/packages/metastudent/trunk/debian/control 2015-04-02 16:11:30 UTC (rev 19014) +++ trunk/packages/metastudent/trunk/debian/control 2015-04-02 16:45:24 UTC (rev 19015) @@ -5,6 +5,7 @@ Section: science Priority: optional Build-Depends-Indep: debhelper (>=9~), + dh-python, python, javahelper, default-jdk ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19014 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-04-02 16:11:30 + (Thu, 02 Apr 2015) New Revision: 19014 Modified: trunk/packages/metastudent/trunk/debian/watch Log: Updated watch for source signing Modified: trunk/packages/metastudent/trunk/debian/watch === --- trunk/packages/metastudent/trunk/debian/watch 2015-04-02 16:07:54 UTC (rev 19013) +++ trunk/packages/metastudent/trunk/debian/watch 2015-04-02 16:11:30 UTC (rev 19014) @@ -1,2 +1,2 @@ version=3 -opts=pasv ftp://rostlab.org/metastudent/metastudent[-]([0-9.]+)\.orig\.tar\.gz debian uupdate +opts="pgpsigurlmangle=s/$/.asc/" ftp://rostlab.org/metastudent/metastudent[-]([0-9.]+)\.orig\.tar\.gz debian uupdate ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19013 - trunk/packages/metastudent/trunk/debian/upstream
Author: hampt-guest Date: 2015-04-02 16:07:54 + (Thu, 02 Apr 2015) New Revision: 19013 Added: trunk/packages/metastudent/trunk/debian/upstream/signing-key.asc Log: Key for source package signing Added: trunk/packages/metastudent/trunk/debian/upstream/signing-key.asc === --- trunk/packages/metastudent/trunk/debian/upstream/signing-key.asc (rev 0) +++ trunk/packages/metastudent/trunk/debian/upstream/signing-key.asc 2015-04-02 16:07:54 UTC (rev 19013) @@ -0,0 +1,31 @@ +-BEGIN PGP PUBLIC KEY BLOCK- +Version: GnuPG v1 + +mQINBFGjiL4BEACppelnAygpc076anmT+NB/IxlKZ8j7I/yCagYZ1heOhJ9XJJHA +AjV1NSVR6Y7Ya9ick92iRCldClk8DScpQf4VZwq3W7f5OxC2wSCi+69mnxSoDKAj +XScXWY4UZLa7y+QauFNj6D42whoetuySR/htCEMeE1uIbTgiYDSQ0VelY9ec9pSA +2AZacpq6ZV35UfVqole6m/apBoHkb+QFKWJeXS0Odhrxxg5vJI7nP/WWTbDUOIuI +Qfq44bvVmit6huNw55s4Qtp0BhvmWF0Q0A9GYo6wx2UFT2XNub0ecWfdm+Jsq94l +GV0Yvr+XNUFlAuOU6DZVUUbzD7+Q9V3s/ffilQMpxO5yRpbRIBCsc8yKiDvPsJxP +qbsKqhIK/f7RSn7x9D1qOjf6bjoD6WT1/AUTB+TJ9yh8B86J3AacgimH9wolesEl +LdCwKz0UnDfePKNRtbht46V0X6YxiezZ7EC0bPPIVaXAmfdUSXU1YKmHk9fR7dUz +RxBuAU1OEZb9JRUDtFk74h1DwIM22E2e4RhzXgIG5Xut78LVD82hBgKt4jQoVr/N +PQTRfNIcyQ+fkRyw8YcL+y0Dj5f1cgfS/DLhsMa1CCdG67VTfAWyXwDAmJdHW81U +90919uuV3NMRK5QWT1RmmaYc8aWMku3oSXSfJk/epey5hwnpe75BcE5MWwARAQAB +tB9Ub2JpYXMgSGFtcCA8aGFtcHRAcm9zdGxhYi5vcmc+iEYEEBEKAAYFAlHfH5gA +CgkQmHaJYZ7RAb+IOQCfRwGtzmcztZMwJ5RjoBRPKumknJUAoMYldMOzEVbCyUar +1Z8wQQL3sNquiQI4BBMBAgAiBQJRo4i+AhsjBgsJCAcDAgYVCAIJCgsEFgIDAQIe +AQIXgAAKCRC0iOOqRvwMA+2VD/9Bk+oy+/atA3F1l2jZUi7VGkllf0SGs5CvyVbE +ihOvbIK4UGqrnJ5SzNssA7ITrlrUPEdSH5yM1TC75yGwCQ8fiMcJSrM/q4gl35j+ +P8SmiQjJsY7aHNVHT+S/B2V0RTmracw9XtDiab+CJ+3DfpRUy9l7ua6SH8fi8cla +c9dkLc9ej5hdq0ECHSBBXIlFg9J+bX0aO5dvG6o1fhmCjcoVmmL2TkOWnWv1ORbz ++EY1P96osCZYZRAot/2C7kKoNvPCLJbt4eanxngSQzy9NCqn5xjLqPuICvIa4WVN ++vblvQIM9qX8L06EdFIvKVGdIyLSXzBVmTTMYvTzBsV1c3PNOj7RG1oQL+bVGhyG +F5C1WBCV+7mwo6ywAceuyG3UkPq5z6ndqRTIxZaml5vwWMu3m/pz0GNVote5e2m8 +uKFNlDTOqT5h/PQwVjDxL1wyDliQZ4e3U3Jt/KtftRuKUqLeQYZg4c+j8Mck9xE7 +Xp+A8SRQ8e1+XZKZNZ/Yo2ggTGbXDna+e0njZyLkVYcuLsi65S2EbX7AYSeJp4Tb +VFg27dQGIyvAGV2ZrTZUAhtXcJ6WdcfLemLwNeu9w/f6hEgEcMhcXiYvWsmVUZ+n +hkrK6Q3GbpjPF9taqfJ6TS0rv9kgNm+GxRdxmGsY2XZ5IJNsQ3Xp5rcr/cTjW9al +GlL6yw== +=eHQD +-END PGP PUBLIC KEY BLOCK- ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r19008 - in trunk/packages/metastudent-data/trunk/debian: . upstream
Author: hampt-guest Date: 2015-04-02 13:01:57 + (Thu, 02 Apr 2015) New Revision: 19008 Added: trunk/packages/metastudent-data/trunk/debian/upstream/signing-key.asc Modified: trunk/packages/metastudent-data/trunk/debian/README.source trunk/packages/metastudent-data/trunk/debian/changelog trunk/packages/metastudent-data/trunk/debian/control trunk/packages/metastudent-data/trunk/debian/copyright trunk/packages/metastudent-data/trunk/debian/rules trunk/packages/metastudent-data/trunk/debian/watch Log: * Updates for version 2.0 of the data package * Includes source package signing Modified: trunk/packages/metastudent-data/trunk/debian/README.source === --- trunk/packages/metastudent-data/trunk/debian/README.source 2015-03-30 13:28:49 UTC (rev 19007) +++ trunk/packages/metastudent-data/trunk/debian/README.source 2015-04-02 13:01:57 UTC (rev 19008) @@ -1,4 +1,4 @@ metastudent-data for Debian === -This package provides large (>100MB uncompressed) BLAST databases required by metastudent. +This package provides large (>500MB uncompressed) BLAST databases required by metastudent. The databases are in binary format, and are multi-platform. For this reason they are installed into /usr/share/metastudent-data. Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2015-03-30 13:28:49 UTC (rev 19007) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2015-04-02 13:01:57 UTC (rev 19008) @@ -1,3 +1,9 @@ +metastudent-data (2.0.0-1) unstable; urgency=low + + * Fully updated and extended all data + + -- Tobias Hamp Sat, 14 Mar 2015 00:43:57 +0200 + metastudent-data (1.0.1-2) unstable; urgency=low * Added missing build dependency rsync (Closes: #708715) Modified: trunk/packages/metastudent-data/trunk/debian/control === --- trunk/packages/metastudent-data/trunk/debian/control2015-03-30 13:28:49 UTC (rev 19007) +++ trunk/packages/metastudent-data/trunk/debian/control2015-04-02 13:01:57 UTC (rev 19008) @@ -4,7 +4,7 @@ Maintainer: Debian Med Packaging Team Uploaders: Tobias Hamp , Laszlo Kajan Build-Depends-Indep: blast2, debhelper (>=8~), rsync -Standards-Version: 3.9.4 +Standards-Version: 3.9.6 Homepage: https://rostlab.org/owiki/index.php/Metastudent Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/metastudent-data/trunk/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent-data/trunk/ Modified: trunk/packages/metastudent-data/trunk/debian/copyright === --- trunk/packages/metastudent-data/trunk/debian/copyright 2015-03-30 13:28:49 UTC (rev 19007) +++ trunk/packages/metastudent-data/trunk/debian/copyright 2015-04-02 13:01:57 UTC (rev 19008) @@ -4,7 +4,7 @@ Source: ftp://rostlab.org/metastudent/ Files: * -Copyright: 2011-2013, Tobias Hamp +Copyright: 2011-2015, Tobias Hamp License: GPL-2+ License: GPL-2+ Modified: trunk/packages/metastudent-data/trunk/debian/rules === --- trunk/packages/metastudent-data/trunk/debian/rules 2015-03-30 13:28:49 UTC (rev 19007) +++ trunk/packages/metastudent-data/trunk/debian/rules 2015-04-02 13:01:57 UTC (rev 19008) @@ -9,3 +9,9 @@ #DEB_COMPRESS_LEVEL ?= -z0v override_dh_builddeb: dh_builddeb -- -Z$(DEB_COMPRESS_TYPE) $(DEB_COMPRESS_LEVEL) + +.PHONY: +get-orig-source: + mkdir -p ../tarballs + uscan --verbose --force-download --destdir=../tarballs + \ No newline at end of file Added: trunk/packages/metastudent-data/trunk/debian/upstream/signing-key.asc === --- trunk/packages/metastudent-data/trunk/debian/upstream/signing-key.asc (rev 0) +++ trunk/packages/metastudent-data/trunk/debian/upstream/signing-key.asc 2015-04-02 13:01:57 UTC (rev 19008) @@ -0,0 +1,31 @@ +-BEGIN PGP PUBLIC KEY BLOCK- +Version: GnuPG v1 + +mQINBFGjiL4BEACppelnAygpc076anmT+NB/IxlKZ8j7I/yCagYZ1heOhJ9XJJHA +AjV1NSVR6Y7Ya9ick92iRCldClk8DScpQf4VZwq3W7f5OxC2wSCi+69mnxSoDKAj +XScXWY4UZLa7y+QauFNj6D42whoetuySR/htCEMeE1uIbTgiYDSQ0VelY9ec9pSA +2AZacpq6ZV35UfVqole6m/apBoHkb+QFKWJeXS0Odhrxxg5vJI7nP/WWTbDUOIuI +Qfq44bvVmit6huNw55s4Qtp0BhvmWF0Q0A9GYo6wx2UFT2XNub0ecWfdm+Jsq94l +GV0Yvr+XNUFlAuOU6DZVUUbzD7+Q9V3s/ffilQMpxO5yRpbRIBCsc8yKiDvPsJxP +qbsKqhIK/f7RSn7x9D1qOjf6bjoD6WT1/AUTB+TJ9yh8B86J3AacgimH9wolesEl +LdCwKz0UnDfePKNRtbht46V0X6YxiezZ7EC0bPPIVaXAmfdUSXU1YKmHk9fR7dUz +RxBuAU1OEZb9JRUDtFk74h1DwIM22E2e4RhzXgIG5Xut78LVD82hBgKt4jQoVr/N +PQTRfNIcyQ+fkRyw8YcL+y0Dj5f1cgfS/DLhsMa1CCdG67VTfAWyXwDAmJdHW81U +90919uuV3NMRK5QWT1RmmaYc8aWMk
[med-svn] r19000 - trunk/packages/metastudent-data-3/trunk/debian
Author: hampt-guest Date: 2015-03-24 17:37:40 + (Tue, 24 Mar 2015) New Revision: 19000 Added: trunk/packages/metastudent-data-3/trunk/debian/upstream-signing-key.pgp Log: Added public key Added: trunk/packages/metastudent-data-3/trunk/debian/upstream-signing-key.pgp === ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18999 - trunk/packages/metastudent-data-3/trunk/debian
Author: hampt-guest Date: 2015-03-24 17:37:17 + (Tue, 24 Mar 2015) New Revision: 18999 Modified: trunk/packages/metastudent-data-3/trunk/debian/watch Log: Source package now signed Modified: trunk/packages/metastudent-data-3/trunk/debian/watch === --- trunk/packages/metastudent-data-3/trunk/debian/watch2015-03-23 22:17:12 UTC (rev 18998) +++ trunk/packages/metastudent-data-3/trunk/debian/watch2015-03-24 17:37:17 UTC (rev 18999) @@ -1,2 +1,2 @@ version=3 -opts=pgpsigurlmangle=s/$/.asc/ pasv ftp://rostlab.org/metastudent/metastudent-data-3-([0-9.]+)\.tar\.[bgx]z debian uupdate +opts="pgpsigurlmangle=s/$/.asc/" ftp://rostlab.org/metastudent/metastudent-data-3-([0-9.]+)\.tar\.[bgx]z debian uupdate ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18998 - trunk/packages/metastudent-data-3/trunk/debian/upstream
Author: hampt-guest Date: 2015-03-23 22:17:12 + (Mon, 23 Mar 2015) New Revision: 18998 Added: trunk/packages/metastudent-data-3/trunk/debian/upstream/signing-key.asc Log: Added signing key to debian Added: trunk/packages/metastudent-data-3/trunk/debian/upstream/signing-key.asc === --- trunk/packages/metastudent-data-3/trunk/debian/upstream/signing-key.asc (rev 0) +++ trunk/packages/metastudent-data-3/trunk/debian/upstream/signing-key.asc 2015-03-23 22:17:12 UTC (rev 18998) @@ -0,0 +1,31 @@ +-BEGIN PGP PUBLIC KEY BLOCK- +Version: GnuPG v1 + +mQINBFGjiL4BEACppelnAygpc076anmT+NB/IxlKZ8j7I/yCagYZ1heOhJ9XJJHA +AjV1NSVR6Y7Ya9ick92iRCldClk8DScpQf4VZwq3W7f5OxC2wSCi+69mnxSoDKAj +XScXWY4UZLa7y+QauFNj6D42whoetuySR/htCEMeE1uIbTgiYDSQ0VelY9ec9pSA +2AZacpq6ZV35UfVqole6m/apBoHkb+QFKWJeXS0Odhrxxg5vJI7nP/WWTbDUOIuI +Qfq44bvVmit6huNw55s4Qtp0BhvmWF0Q0A9GYo6wx2UFT2XNub0ecWfdm+Jsq94l +GV0Yvr+XNUFlAuOU6DZVUUbzD7+Q9V3s/ffilQMpxO5yRpbRIBCsc8yKiDvPsJxP +qbsKqhIK/f7RSn7x9D1qOjf6bjoD6WT1/AUTB+TJ9yh8B86J3AacgimH9wolesEl +LdCwKz0UnDfePKNRtbht46V0X6YxiezZ7EC0bPPIVaXAmfdUSXU1YKmHk9fR7dUz +RxBuAU1OEZb9JRUDtFk74h1DwIM22E2e4RhzXgIG5Xut78LVD82hBgKt4jQoVr/N +PQTRfNIcyQ+fkRyw8YcL+y0Dj5f1cgfS/DLhsMa1CCdG67VTfAWyXwDAmJdHW81U +90919uuV3NMRK5QWT1RmmaYc8aWMku3oSXSfJk/epey5hwnpe75BcE5MWwARAQAB +tB9Ub2JpYXMgSGFtcCA8aGFtcHRAcm9zdGxhYi5vcmc+iEYEEBEKAAYFAlHfH5gA +CgkQmHaJYZ7RAb+IOQCfRwGtzmcztZMwJ5RjoBRPKumknJUAoMYldMOzEVbCyUar +1Z8wQQL3sNquiQI4BBMBAgAiBQJRo4i+AhsjBgsJCAcDAgYVCAIJCgsEFgIDAQIe +AQIXgAAKCRC0iOOqRvwMA+2VD/9Bk+oy+/atA3F1l2jZUi7VGkllf0SGs5CvyVbE +ihOvbIK4UGqrnJ5SzNssA7ITrlrUPEdSH5yM1TC75yGwCQ8fiMcJSrM/q4gl35j+ +P8SmiQjJsY7aHNVHT+S/B2V0RTmracw9XtDiab+CJ+3DfpRUy9l7ua6SH8fi8cla +c9dkLc9ej5hdq0ECHSBBXIlFg9J+bX0aO5dvG6o1fhmCjcoVmmL2TkOWnWv1ORbz ++EY1P96osCZYZRAot/2C7kKoNvPCLJbt4eanxngSQzy9NCqn5xjLqPuICvIa4WVN ++vblvQIM9qX8L06EdFIvKVGdIyLSXzBVmTTMYvTzBsV1c3PNOj7RG1oQL+bVGhyG +F5C1WBCV+7mwo6ywAceuyG3UkPq5z6ndqRTIxZaml5vwWMu3m/pz0GNVote5e2m8 +uKFNlDTOqT5h/PQwVjDxL1wyDliQZ4e3U3Jt/KtftRuKUqLeQYZg4c+j8Mck9xE7 +Xp+A8SRQ8e1+XZKZNZ/Yo2ggTGbXDna+e0njZyLkVYcuLsi65S2EbX7AYSeJp4Tb +VFg27dQGIyvAGV2ZrTZUAhtXcJ6WdcfLemLwNeu9w/f6hEgEcMhcXiYvWsmVUZ+n +hkrK6Q3GbpjPF9taqfJ6TS0rv9kgNm+GxRdxmGsY2XZ5IJNsQ3Xp5rcr/cTjW9al +GlL6yw== +=eHQD +-END PGP PUBLIC KEY BLOCK- ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18997 - trunk/packages/metastudent-data-3/trunk/debian
Author: hampt-guest Date: 2015-03-23 18:52:26 + (Mon, 23 Mar 2015) New Revision: 18997 Modified: trunk/packages/metastudent-data-3/trunk/debian/control trunk/packages/metastudent-data-3/trunk/debian/watch Log: * newer standards * source package sig check Modified: trunk/packages/metastudent-data-3/trunk/debian/control === --- trunk/packages/metastudent-data-3/trunk/debian/control 2015-03-23 18:11:38 UTC (rev 18996) +++ trunk/packages/metastudent-data-3/trunk/debian/control 2015-03-23 18:52:26 UTC (rev 18997) @@ -4,7 +4,7 @@ Maintainer: Debian Med Packaging Team Uploaders: Tobias Hamp , Laszlo Kajan Build-Depends-Indep: blast2, debhelper (>=8~), rsync -Standards-Version: 3.9.4 +Standards-Version: 3.9.6 Homepage: https://rostlab.org/owiki/index.php/Metastudent Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/metastudent-data-3/trunk/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent-data-3/trunk/ Modified: trunk/packages/metastudent-data-3/trunk/debian/watch === --- trunk/packages/metastudent-data-3/trunk/debian/watch2015-03-23 18:11:38 UTC (rev 18996) +++ trunk/packages/metastudent-data-3/trunk/debian/watch2015-03-23 18:52:26 UTC (rev 18997) @@ -1,2 +1,2 @@ version=3 -opts=pasv ftp://rostlab.org/metastudent/metastudent-data-3-([0-9.]+)\.tar\.[bgx]z debian uupdate +opts=pgpsigurlmangle=s/$/.asc/ pasv ftp://rostlab.org/metastudent/metastudent-data-3-([0-9.]+)\.tar\.[bgx]z debian uupdate ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18996 - trunk/packages/metastudent-data-3/trunk/debian
Author: hampt-guest
Date: 2015-03-23 18:11:38 + (Mon, 23 Mar 2015)
New Revision: 18996
Modified:
trunk/packages/metastudent-data-3/trunk/debian/changelog
trunk/packages/metastudent-data-3/trunk/debian/control
Log:
* updated bug in changelog
* corrected data package nr in control
Modified: trunk/packages/metastudent-data-3/trunk/debian/changelog
===
--- trunk/packages/metastudent-data-3/trunk/debian/changelog2015-03-23
13:33:38 UTC (rev 18995)
+++ trunk/packages/metastudent-data-3/trunk/debian/changelog2015-03-23
18:11:38 UTC (rev 18996)
@@ -1,5 +1,5 @@
metastudent-data-3 (1.0.1-1) unstable; urgency=low
- * Initial release
+ * Initial release (Closes: #781041)
-- Tobias Hamp Sat, 14 Mar 2015 00:43:57 +0200
Modified: trunk/packages/metastudent-data-3/trunk/debian/control
===
--- trunk/packages/metastudent-data-3/trunk/debian/control 2015-03-23
13:33:38 UTC (rev 18995)
+++ trunk/packages/metastudent-data-3/trunk/debian/control 2015-03-23
18:11:38 UTC (rev 18996)
@@ -14,7 +14,7 @@
Homepage: http://www.rostlab.org
Pre-Depends: dpkg (>= 1.15.6~)
Depends: ${misc:Depends}
-Description: predictor of Gene Ontology terms from protein sequence - data
files
+Description: predictor of Gene Ontology terms from protein sequence - data #3
Often, only the sequence of a protein is known, but
not its functions. Metastudent will try to predict
missing functional annotations through homology searches (BLAST).
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[med-svn] r18983 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-03-20 22:14:28 + (Fri, 20 Mar 2015) New Revision: 18983 Modified: trunk/packages/metastudent/trunk/debian/changelog trunk/packages/metastudent/trunk/debian/watch Log: fixed setup.py Modified: trunk/packages/metastudent/trunk/debian/changelog === --- trunk/packages/metastudent/trunk/debian/changelog 2015-03-20 18:36:22 UTC (rev 18982) +++ trunk/packages/metastudent/trunk/debian/changelog 2015-03-20 22:14:28 UTC (rev 18983) @@ -1,5 +1,11 @@ -metastudent (2.0.0-1) unstable; urgency=low +metastudent (2.0.1-1) unstable; urgency=low + * fixed setup.py + + -- Tobias Hamp Fri, 20 Mar 2015 20:08:05 +0200 + +metastudent (2.0.0-1) UNRELEASED; urgency=low + * Added Cellular Component Ontology * Updated GO annotations databases * Updated Gene Ontology Modified: trunk/packages/metastudent/trunk/debian/watch === --- trunk/packages/metastudent/trunk/debian/watch 2015-03-20 18:36:22 UTC (rev 18982) +++ trunk/packages/metastudent/trunk/debian/watch 2015-03-20 22:14:28 UTC (rev 18983) @@ -1,2 +1,2 @@ version=3 -opts=pasv ftp://rostlab.org/metastudent/metastudent[-]([0-9.]+)\.tar\.gz debian uupdate +opts=pasv ftp://rostlab.org/metastudent/metastudent[-]([0-9.]+)\.orig\.tar\.gz debian uupdate ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18982 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-03-20 18:36:22 + (Fri, 20 Mar 2015) New Revision: 18982 Modified: trunk/packages/metastudent/trunk/debian/watch Log: trying new URL Modified: trunk/packages/metastudent/trunk/debian/watch === --- trunk/packages/metastudent/trunk/debian/watch 2015-03-20 18:32:42 UTC (rev 18981) +++ trunk/packages/metastudent/trunk/debian/watch 2015-03-20 18:36:22 UTC (rev 18982) @@ -1,2 +1,2 @@ version=3 -opts=pasv ftp://rostlab.org/metastudent/metastudent[_-]([0-9.]+)\.tar\.gz debian uupdate +opts=pasv ftp://rostlab.org/metastudent/metastudent[-]([0-9.]+)\.tar\.gz debian uupdate ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18981 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-03-20 18:32:42 + (Fri, 20 Mar 2015) New Revision: 18981 Modified: trunk/packages/metastudent/trunk/debian/watch Log: revert URL change Modified: trunk/packages/metastudent/trunk/debian/watch === --- trunk/packages/metastudent/trunk/debian/watch 2015-03-20 18:20:05 UTC (rev 18980) +++ trunk/packages/metastudent/trunk/debian/watch 2015-03-20 18:32:42 UTC (rev 18981) @@ -1,2 +1,2 @@ version=3 -opts=pasv ftp://rostlab.org/metastudent/metastudent[_-]([0-9.]+)\.orig\.tar\.gz debian uupdate +opts=pasv ftp://rostlab.org/metastudent/metastudent[_-]([0-9.]+)\.tar\.gz debian uupdate ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18980 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-03-20 18:20:05 + (Fri, 20 Mar 2015) New Revision: 18980 Modified: trunk/packages/metastudent/trunk/debian/watch Log: trying another upstream URL Modified: trunk/packages/metastudent/trunk/debian/watch === --- trunk/packages/metastudent/trunk/debian/watch 2015-03-20 18:04:09 UTC (rev 18979) +++ trunk/packages/metastudent/trunk/debian/watch 2015-03-20 18:20:05 UTC (rev 18980) @@ -1,2 +1,2 @@ version=3 -opts=pasv ftp://rostlab.org/metastudent/metastudent[_-]([0-9.]+)\.tar\.gz debian uupdate +opts=pasv ftp://rostlab.org/metastudent/metastudent[_-]([0-9.]+)\.orig\.tar\.gz debian uupdate ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18979 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2015-03-20 18:04:09 + (Fri, 20 Mar 2015) New Revision: 18979 Modified: trunk/packages/metastudent/trunk/debian/README.Debian trunk/packages/metastudent/trunk/debian/changelog trunk/packages/metastudent/trunk/debian/control trunk/packages/metastudent/trunk/debian/copyright Log: debian update for new version Modified: trunk/packages/metastudent/trunk/debian/README.Debian === --- trunk/packages/metastudent/trunk/debian/README.Debian 2015-03-20 16:33:43 UTC (rev 18978) +++ trunk/packages/metastudent/trunk/debian/README.Debian 2015-03-20 18:04:09 UTC (rev 18979) @@ -1,5 +1,5 @@ metastudent for Debian == -metastudent searches through large data files (>100M compressed) in order to predict gene ontology terms. These data files are available from the metastudent-data package or [1], and are released under the GPL-2+. +metastudent searches through large data files (>200M compressed) in order to predict gene ontology terms. These data files are available from the metastudent-data package or [1], and are released under the GPL-2+. [1] ftp://rostlab.org/metastudent/metastudent-data_[0-9.]+.tar.gz Modified: trunk/packages/metastudent/trunk/debian/changelog === --- trunk/packages/metastudent/trunk/debian/changelog 2015-03-20 16:33:43 UTC (rev 18978) +++ trunk/packages/metastudent/trunk/debian/changelog 2015-03-20 18:04:09 UTC (rev 18979) @@ -1,3 +1,13 @@ +metastudent (2.0.0-1) unstable; urgency=low + + * Added Cellular Component Ontology + * Updated GO annotations databases + * Updated Gene Ontology + * Predictions are now fully propagated to the root + * Updated URL for image generation + + -- Tobias Hamp Fri, 20 Mar 2015 19:08:05 +0200 + metastudent (1.0.11-2) unstable; urgency=medium * Fixed VCS URL. Modified: trunk/packages/metastudent/trunk/debian/control === --- trunk/packages/metastudent/trunk/debian/control 2015-03-20 16:33:43 UTC (rev 18978) +++ trunk/packages/metastudent/trunk/debian/control 2015-03-20 18:04:09 UTC (rev 18979) @@ -26,14 +26,14 @@ libipc-run-perl, libgraphviz-perl, libfile-chdir-perl, - metastudent-data, - metastudent-data-2 + metastudent-data-3 Description: predictor of Gene Ontology terms from protein sequence Often, only the sequence of a protein is known, but not its functions. Metastudent will try to predict missing functional annotations through homology searches (BLAST). . All predicted functions correspond to Gene Ontology (GO) - terms from the Molecular Function Ontology (MFO) and the Biological Process - Ontology (BPO) and are associated with a reliability score. + terms from the Molecular Function (MFO), the Biological Process + (BPO) and the Cellular Component Ontology (CCO) and are associated + with a reliability score. Modified: trunk/packages/metastudent/trunk/debian/copyright === --- trunk/packages/metastudent/trunk/debian/copyright 2015-03-20 16:33:43 UTC (rev 18978) +++ trunk/packages/metastudent/trunk/debian/copyright 2015-03-20 18:04:09 UTC (rev 18979) @@ -38,16 +38,16 @@ License: GPL-2+ Files: metastudent -Copyright: 2012-2013 Tobias Hamp +Copyright: 2012-2015 Tobias Hamp License: GPL-2+ Files: debian/* -Copyright: 2011-2013, Tobias Hamp +Copyright: 2011-2015, Tobias Hamp 2013, Laszlo Kajan License: GPL-2+ Files: * -Copyright: 2010-2013, Tobias Hamp +Copyright: 2010-2015, Tobias Hamp License: GPL-2+ License: GPL-2+ ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18977 - trunk/packages/metastudent-data-3/trunk/debian
Author: hampt-guest Date: 2015-03-16 17:13:51 + (Mon, 16 Mar 2015) New Revision: 18977 Modified: trunk/packages/metastudent-data-3/trunk/debian/rules Log: debug rules Modified: trunk/packages/metastudent-data-3/trunk/debian/rules === --- trunk/packages/metastudent-data-3/trunk/debian/rules2015-03-16 17:11:01 UTC (rev 18976) +++ trunk/packages/metastudent-data-3/trunk/debian/rules2015-03-16 17:13:51 UTC (rev 18977) @@ -13,4 +13,4 @@ .PHONY: get-orig-source: mkdir -p ../tarballs - uscan --verbose --force-download --destdir=.. + uscan --verbose --force-download --destdir=../tarballs ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18975 - trunk/packages/metastudent-data-3/trunk/debian
Author: hampt-guest Date: 2015-03-16 16:47:03 + (Mon, 16 Mar 2015) New Revision: 18975 Modified: trunk/packages/metastudent-data-3/trunk/debian/watch Log: Corrected ftp URL for source package Modified: trunk/packages/metastudent-data-3/trunk/debian/watch === --- trunk/packages/metastudent-data-3/trunk/debian/watch2015-03-16 15:49:24 UTC (rev 18974) +++ trunk/packages/metastudent-data-3/trunk/debian/watch2015-03-16 16:47:03 UTC (rev 18975) @@ -1,2 +1,2 @@ version=3 -opts=pasv ftp://rostlab.org/metastudent/metastudent-data-([0-9.]+)\.tar\.[bgx]z debian uupdate +opts=pasv ftp://rostlab.org/metastudent/metastudent-data-3-([0-9.]+)\.tar\.[bgx]z debian uupdate ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18973 - trunk/packages/metastudent-data-3/trunk/debian
Author: hampt-guest Date: 2015-03-16 15:48:42 + (Mon, 16 Mar 2015) New Revision: 18973 Modified: trunk/packages/metastudent-data-3/trunk/debian/rules Log: Updated rules Modified: trunk/packages/metastudent-data-3/trunk/debian/rules === --- trunk/packages/metastudent-data-3/trunk/debian/rules2015-03-16 15:36:03 UTC (rev 18972) +++ trunk/packages/metastudent-data-3/trunk/debian/rules2015-03-16 15:48:42 UTC (rev 18973) @@ -9,3 +9,8 @@ #DEB_COMPRESS_LEVEL ?= -z0v override_dh_builddeb: dh_builddeb -- -Z$(DEB_COMPRESS_TYPE) $(DEB_COMPRESS_LEVEL) + +.PHONY: +get-orig-source: + mkdir -p ../tarballs + uscan --verbose --force-download --destdir=../tarballs ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18972 - trunk/packages/metastudent-data-3/trunk/debian
Author: hampt-guest Date: 2015-03-16 15:36:03 + (Mon, 16 Mar 2015) New Revision: 18972 Modified: trunk/packages/metastudent-data-3/trunk/debian/changelog Log: corrected version number Modified: trunk/packages/metastudent-data-3/trunk/debian/changelog === --- trunk/packages/metastudent-data-3/trunk/debian/changelog2015-03-14 21:50:46 UTC (rev 18971) +++ trunk/packages/metastudent-data-3/trunk/debian/changelog2015-03-16 15:36:03 UTC (rev 18972) @@ -1,4 +1,4 @@ -metastudent-data-3 (1.0.1-1~bpo70+1) unstable; urgency=low +metastudent-data-3 (1.0.1-1) unstable; urgency=low * Initial release ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18969 - trunk/packages/metastudent-data-3/trunk/debian
Author: hampt-guest Date: 2015-03-14 12:55:24 + (Sat, 14 Mar 2015) New Revision: 18969 Modified: trunk/packages/metastudent-data-3/trunk/debian/changelog trunk/packages/metastudent-data-3/trunk/debian/control Log: * version in changelog updated * description shortened Modified: trunk/packages/metastudent-data-3/trunk/debian/changelog === --- trunk/packages/metastudent-data-3/trunk/debian/changelog2015-03-14 01:22:34 UTC (rev 18968) +++ trunk/packages/metastudent-data-3/trunk/debian/changelog2015-03-14 12:55:24 UTC (rev 18969) @@ -1,4 +1,4 @@ -metastudent-data-3 (1.0.1-1) unstable; urgency=low +metastudent-data-3 (1.0.1-1~bpo70+1) unstable; urgency=low * Initial release Modified: trunk/packages/metastudent-data-3/trunk/debian/control === --- trunk/packages/metastudent-data-3/trunk/debian/control 2015-03-14 01:22:34 UTC (rev 18968) +++ trunk/packages/metastudent-data-3/trunk/debian/control 2015-03-14 12:55:24 UTC (rev 18969) @@ -20,7 +20,8 @@ missing functional annotations through homology searches (BLAST). . All predicted functions correspond to Gene Ontology (GO) - terms from the Molecular Function Ontology (MFO), the Cellular Component Ontology (CCO) and the Biological Process - Ontology (BPO) and are associated with a reliability score. + terms from the Molecular Function (MFO), the Cellular + Component (CCO) and the Biological Process Ontology (BPO) + and are associated with a reliability score. . This package contains data files for metastudent. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18968 - in trunk/packages/metastudent-data-3/trunk: . debian debian/source debian/upstream
Author: hampt-guest
Date: 2015-03-14 01:22:34 + (Sat, 14 Mar 2015)
New Revision: 18968
Added:
trunk/packages/metastudent-data-3/trunk/debian/
trunk/packages/metastudent-data-3/trunk/debian/README.source
trunk/packages/metastudent-data-3/trunk/debian/changelog
trunk/packages/metastudent-data-3/trunk/debian/compat
trunk/packages/metastudent-data-3/trunk/debian/control
trunk/packages/metastudent-data-3/trunk/debian/copyright
trunk/packages/metastudent-data-3/trunk/debian/rules
trunk/packages/metastudent-data-3/trunk/debian/source/
trunk/packages/metastudent-data-3/trunk/debian/source/format
trunk/packages/metastudent-data-3/trunk/debian/upstream/
trunk/packages/metastudent-data-3/trunk/debian/upstream/metadata
trunk/packages/metastudent-data-3/trunk/debian/watch
Log:
inital check in
Added: trunk/packages/metastudent-data-3/trunk/debian/README.source
===
--- trunk/packages/metastudent-data-3/trunk/debian/README.source
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/README.source
2015-03-14 01:22:34 UTC (rev 18968)
@@ -0,0 +1,4 @@
+metastudent-data-3 for Debian
+===
+This package provides large (>500MB uncompressed) BLAST databases required by
metastudent.
+The databases are in binary format, and are multi-platform. For this reason
they are installed into /usr/share/metastudent-data-3.
Added: trunk/packages/metastudent-data-3/trunk/debian/changelog
===
--- trunk/packages/metastudent-data-3/trunk/debian/changelog
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/changelog2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1,5 @@
+metastudent-data-3 (1.0.1-1) unstable; urgency=low
+
+ * Initial release
+
+ -- Tobias Hamp Sat, 14 Mar 2015 00:43:57 +0200
Added: trunk/packages/metastudent-data-3/trunk/debian/compat
===
--- trunk/packages/metastudent-data-3/trunk/debian/compat
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/compat 2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1 @@
+8
Added: trunk/packages/metastudent-data-3/trunk/debian/control
===
--- trunk/packages/metastudent-data-3/trunk/debian/control
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/control 2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1,26 @@
+Source: metastudent-data-3
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team
+Uploaders: Tobias Hamp , Laszlo Kajan
+Build-Depends-Indep: blast2, debhelper (>=8~), rsync
+Standards-Version: 3.9.4
+Homepage: https://rostlab.org/owiki/index.php/Metastudent
+Vcs-Svn:
svn://svn.debian.org/debian-med/trunk/packages/metastudent-data-3/trunk/
+Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent-data-3/trunk/
+
+Package: metastudent-data-3
+Architecture: all
+Homepage: http://www.rostlab.org
+Pre-Depends: dpkg (>= 1.15.6~)
+Depends: ${misc:Depends}
+Description: predictor of Gene Ontology terms from protein sequence - data
files
+ Often, only the sequence of a protein is known, but
+ not its functions. Metastudent will try to predict
+ missing functional annotations through homology searches (BLAST).
+ .
+ All predicted functions correspond to Gene Ontology (GO)
+ terms from the Molecular Function Ontology (MFO), the Cellular Component
Ontology (CCO) and the Biological Process
+ Ontology (BPO) and are associated with a reliability score.
+ .
+ This package contains data files for metastudent.
Added: trunk/packages/metastudent-data-3/trunk/debian/copyright
===
--- trunk/packages/metastudent-data-3/trunk/debian/copyright
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/copyright2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1,25 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: metastudent-data-3
+Upstream-Contact: Tobias Hamp
+Source: ftp://rostlab.org/metastudent/
+
+Files: *
+Copyright: 2011-2015, Tobias Hamp
+License: GPL-2+
+
+License: GPL-2+
+This package is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+.
+This package is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+.
+You should have receiv
[med-svn] r18965 - trunk/packages
Author: hampt-guest Date: 2015-03-13 22:49:23 + (Fri, 13 Mar 2015) New Revision: 18965 Added: trunk/packages/metastudent-data-3/ Log: ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18966 - trunk/packages/metastudent-data-3
Author: hampt-guest Date: 2015-03-13 22:49:52 + (Fri, 13 Mar 2015) New Revision: 18966 Added: trunk/packages/metastudent-data-3/branches/ trunk/packages/metastudent-data-3/tags/ trunk/packages/metastudent-data-3/trunk/ Log: ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r18967 - trunk/packages/metastudent-data-3
Author: hampt-guest Date: 2015-03-13 22:49:59 + (Fri, 13 Mar 2015) New Revision: 18967 Removed: trunk/packages/metastudent-data-3/branches/ Log: ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15607 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest
Date: 2013-12-24 02:38:13 + (Tue, 24 Dec 2013)
New Revision: 15607
Removed:
trunk/packages/metastudent/trunk/debian/libgossip-java.jlibs
trunk/packages/metastudent/trunk/debian/libgroupb-java.jlibs
Modified:
trunk/packages/metastudent/trunk/debian/rules
Log:
* install jars to /usr/share/metastudent
Deleted: trunk/packages/metastudent/trunk/debian/libgossip-java.jlibs
===
--- trunk/packages/metastudent/trunk/debian/libgossip-java.jlibs
2013-12-24 01:54:13 UTC (rev 15606)
+++ trunk/packages/metastudent/trunk/debian/libgossip-java.jlibs
2013-12-24 02:38:13 UTC (rev 15607)
@@ -1 +0,0 @@
-metastudentPkg/lib/groupA/GOSSIP/gossip.jar
Deleted: trunk/packages/metastudent/trunk/debian/libgroupb-java.jlibs
===
--- trunk/packages/metastudent/trunk/debian/libgroupb-java.jlibs
2013-12-24 01:54:13 UTC (rev 15606)
+++ trunk/packages/metastudent/trunk/debian/libgroupb-java.jlibs
2013-12-24 02:38:13 UTC (rev 15607)
@@ -1,2 +0,0 @@
-metastudentPkg/lib/groupB/java/blastfilep.jar
-metastudentPkg/lib/groupB/pp2.jar
Modified: trunk/packages/metastudent/trunk/debian/rules
===
--- trunk/packages/metastudent/trunk/debian/rules 2013-12-24 01:54:13 UTC
(rev 15606)
+++ trunk/packages/metastudent/trunk/debian/rules 2013-12-24 02:38:13 UTC
(rev 15607)
@@ -14,6 +14,7 @@
override_dh_auto_install:
dh_auto_install
find . -regex
".*/knn_weighted\|.*/CafaWrapper1\.pl\|.*/CafaWrapper2\.pl\|.*/CafaWrapper3\.pl\|.*/CafaWrapper3_new\.pl\|.*/exercise3\.pl\|.*/treehandler\.pl\|.*/validate\.pl"
-exec chmod +x {} \;
+ mv *.jar $(CURDIR)/debian/metastudent/usr/share/metastudent
get-orig-source:
mkdir -p ../tarballs
___
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[med-svn] r15606 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2013-12-24 01:54:13 + (Tue, 24 Dec 2013) New Revision: 15606 Added: trunk/packages/metastudent/trunk/debian/metastudent.jlibs Modified: trunk/packages/metastudent/trunk/debian/javabuild Log: * added .jlibs to install jars into /usr/share/java * changed jar path in javabuild Modified: trunk/packages/metastudent/trunk/debian/javabuild === --- trunk/packages/metastudent/trunk/debian/javabuild 2013-12-23 23:35:50 UTC (rev 15605) +++ trunk/packages/metastudent/trunk/debian/javabuild 2013-12-24 01:54:13 UTC (rev 15606) @@ -1,3 +1,3 @@ -metastudentPkg/lib/groupA/GOSSIP/gossip.jar metastudentPkg/lib/groupA/GOSSIP/src -metastudentPkg/lib/groupB/java/blastfilep.jar metastudentPkg/lib/groupB/java -metastudentPkg/lib/groupB/pp2.jar metastudentPkg/lib/groupB +gossip.jar metastudentPkg/lib/groupA/GOSSIP/src +blastfilep.jar metastudentPkg/lib/groupB/java +pp2.jar metastudentPkg/lib/groupB Added: trunk/packages/metastudent/trunk/debian/metastudent.jlibs === --- trunk/packages/metastudent/trunk/debian/metastudent.jlibs (rev 0) +++ trunk/packages/metastudent/trunk/debian/metastudent.jlibs 2013-12-24 01:54:13 UTC (rev 15606) @@ -0,0 +1,3 @@ +gossip.jar +blastfilep.jar +pp2.jar ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15605 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2013-12-23 23:35:50 + (Mon, 23 Dec 2013) New Revision: 15605 Modified: trunk/packages/metastudent/trunk/debian/control Log: * updated dh version in control file Modified: trunk/packages/metastudent/trunk/debian/control === --- trunk/packages/metastudent/trunk/debian/control 2013-12-23 21:55:04 UTC (rev 15604) +++ trunk/packages/metastudent/trunk/debian/control 2013-12-23 23:35:50 UTC (rev 15605) @@ -4,7 +4,7 @@ Laszlo Kajan Section: science Priority: optional -Build-Depends-Indep: debhelper (>=8~), +Build-Depends-Indep: debhelper (>=9~), python-support, python, javahelper, ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r15601 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest
Date: 2013-12-23 19:55:30 + (Mon, 23 Dec 2013)
New Revision: 15601
Modified:
trunk/packages/metastudent/trunk/debian/changelog
trunk/packages/metastudent/trunk/debian/compat
trunk/packages/metastudent/trunk/debian/control
Log:
* Updated debhelper compatibility to 9
* Removed Homepage entry in control
* Removed perl dependency in control
* Ran cme fix dpkg-control
Modified: trunk/packages/metastudent/trunk/debian/changelog
===
--- trunk/packages/metastudent/trunk/debian/changelog 2013-12-23 17:01:45 UTC
(rev 15600)
+++ trunk/packages/metastudent/trunk/debian/changelog 2013-12-23 19:55:30 UTC
(rev 15601)
@@ -1,4 +1,4 @@
-metastudent (1.0.11-1) unstable; urgency=low
+metastudent (1.0.11-1) UNRELEASED; urgency=low
* New upstream release.
Modified: trunk/packages/metastudent/trunk/debian/compat
===
--- trunk/packages/metastudent/trunk/debian/compat 2013-12-23 17:01:45 UTC
(rev 15600)
+++ trunk/packages/metastudent/trunk/debian/compat 2013-12-23 19:55:30 UTC
(rev 15601)
@@ -1 +1 @@
-8
+9
Modified: trunk/packages/metastudent/trunk/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2013-12-23 17:01:45 UTC
(rev 15600)
+++ trunk/packages/metastudent/trunk/debian/control 2013-12-23 19:55:30 UTC
(rev 15601)
@@ -1,19 +1,34 @@
Source: metastudent
+Maintainer: Debian Med Packaging Team
+Uploaders: Tobias Hamp ,
+ Laszlo Kajan
Section: science
Priority: optional
-Maintainer: Debian Med Packaging Team
-Uploaders: Tobias Hamp , Laszlo Kajan
-Build-Depends-Indep: debhelper (>=8~), python-support (>= 0.6), python (>=
2.6), javahelper (>=0.25), default-jdk
-XS-Python-Version: >= 2.6
-Standards-Version: 3.9.4
+Build-Depends-Indep: debhelper (>=8~),
+ python-support,
+ python,
+ javahelper,
+ default-jdk
+Standards-Version: 3.9.3
+Vcs-Browser:
http://anonscm.debian.org/wsvn/debian-med/trunk/packages/metastudent/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/metastudent/trunk/
Homepage: https://rostlab.org/owiki/index.php/Metastudent
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/metastudent/trunk/
-Vcs-Browser:
http://anonscm.debian.org/wsvn/debian-med/trunk/packages/metastudent/trunk/
+X-Python-Version: >= 2.6
Package: metastudent
Architecture: all
-Homepage: http://www.rostlab.org
-Depends: ${misc:Depends}, ${perl:Depends}, ${python:Depends}, python (>= 2.6),
blast2, default-jre, libgo-perl, libipc-run-perl, libgraphviz-perl,
libfile-chdir-perl, metastudent-data (>=1.0.1), metastudent-data-2 (>=1.0.0),
perl
+Depends: ${misc:Depends},
+ ${perl:Depends},
+ ${python:Depends},
+ python,
+ blast2,
+ default-jre,
+ libgo-perl,
+ libipc-run-perl,
+ libgraphviz-perl,
+ libfile-chdir-perl,
+ metastudent-data,
+ metastudent-data-2
Description: predictor of Gene Ontology terms from protein sequence
Often, only the sequence of a protein is known, but
not its functions. Metastudent will try to predict
@@ -22,3 +37,4 @@
All predicted functions correspond to Gene Ontology (GO)
terms from the Molecular Function Ontology (MFO) and the Biological Process
Ontology (BPO) and are associated with a reliability score.
+
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[med-svn] r15531 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest
Date: 2013-12-13 23:36:34 + (Fri, 13 Dec 2013)
New Revision: 15531
Modified:
trunk/packages/metastudent/trunk/debian/control
Log:
updated control
Modified: trunk/packages/metastudent/trunk/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2013-12-13 23:35:40 UTC
(rev 15530)
+++ trunk/packages/metastudent/trunk/debian/control 2013-12-13 23:36:34 UTC
(rev 15531)
@@ -13,7 +13,7 @@
Package: metastudent
Architecture: all
Homepage: http://www.rostlab.org
-Depends: ${misc:Depends}, ${perl:Depends}, ${python:Depends}, python (>= 2.6),
blast2, default-jre, libgo-perl, libipc-run-perl, libgraphviz-perl,
metastudent-data (>=1.0.1), metastudent-data-2 (>=1.0.0), perl
+Depends: ${misc:Depends}, ${perl:Depends}, ${python:Depends}, python (>= 2.6),
blast2, default-jre, libgo-perl, libipc-run-perl, libgraphviz-perl,
libfile-chdir-perl, metastudent-data (>=1.0.1), metastudent-data-2 (>=1.0.0),
perl
Description: predictor of Gene Ontology terms from protein sequence
Often, only the sequence of a protein is known, but
not its functions. Metastudent will try to predict
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[med-svn] r15530 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2013-12-13 23:35:40 + (Fri, 13 Dec 2013) New Revision: 15530 Modified: trunk/packages/metastudent/trunk/debian/changelog Log: updated changelog Modified: trunk/packages/metastudent/trunk/debian/changelog === --- trunk/packages/metastudent/trunk/debian/changelog 2013-12-13 22:51:05 UTC (rev 15529) +++ trunk/packages/metastudent/trunk/debian/changelog 2013-12-13 23:35:40 UTC (rev 15530) @@ -1,3 +1,9 @@ +metastudent (1.0.11-1) unstable; urgency=low + + * New upstream release. + + -- Tobias Hamp Fri, 13 Dec 2013 09:21:18 +0200 + metastudent (1.0.10-1) unstable; urgency=low * New upstream release. ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13885 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2013-06-08 14:20:12 + (Sat, 08 Jun 2013) New Revision: 13885 Modified: trunk/packages/metastudent/trunk/debian/changelog Log: bugfix for long fasta heades; requiring metastudent-data-2 for name mapping Modified: trunk/packages/metastudent/trunk/debian/changelog === --- trunk/packages/metastudent/trunk/debian/changelog 2013-06-08 14:17:23 UTC (rev 13884) +++ trunk/packages/metastudent/trunk/debian/changelog 2013-06-08 14:20:12 UTC (rev 13885) @@ -2,7 +2,7 @@ * New upstream release. - -- Tobias Hamp Wed, 05 Jun 2013 16:41:08 +0200 + -- Tobias Hamp Wed, 08 Jun 2013 17:41:08 +0200 metastudent (1.0.9-1~bpo70+1) unstable; urgency=low ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13884 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest
Date: 2013-06-08 14:17:23 + (Sat, 08 Jun 2013)
New Revision: 13884
Modified:
trunk/packages/metastudent/trunk/debian/changelog
trunk/packages/metastudent/trunk/debian/control
Log:
bugfix for long fasta heades; requiring metastudent-data-2 for name mapping
Modified: trunk/packages/metastudent/trunk/debian/changelog
===
--- trunk/packages/metastudent/trunk/debian/changelog 2013-06-08 11:13:51 UTC
(rev 13883)
+++ trunk/packages/metastudent/trunk/debian/changelog 2013-06-08 14:17:23 UTC
(rev 13884)
@@ -1,9 +1,15 @@
-metastudent (1.0.9-1) UNRELEASED; urgency=low
+metastudent (1.0.10-1~bpo70+1) unstable; urgency=low
* New upstream release.
-- Tobias Hamp Wed, 05 Jun 2013 16:41:08 +0200
+metastudent (1.0.9-1~bpo70+1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp Wed, 05 Jun 2013 16:41:08 +0200
+
metastudent (1.0.8-2) unstable; urgency=low
* This version depends on data packaged as metastudent-data.
Modified: trunk/packages/metastudent/trunk/debian/control
===
--- trunk/packages/metastudent/trunk/debian/control 2013-06-08 11:13:51 UTC
(rev 13883)
+++ trunk/packages/metastudent/trunk/debian/control 2013-06-08 14:17:23 UTC
(rev 13884)
@@ -13,7 +13,7 @@
Package: metastudent
Architecture: all
Homepage: http://www.rostlab.org
-Depends: ${misc:Depends}, ${perl:Depends}, ${python:Depends}, python (>= 2.6),
blast2, default-jre, libgo-perl, libipc-run-perl, libgraphviz-perl,
metastudent-data (>=1.0.1), perl
+Depends: ${misc:Depends}, ${perl:Depends}, ${python:Depends}, python (>= 2.6),
blast2, default-jre, libgo-perl, libipc-run-perl, libgraphviz-perl,
metastudent-data (>=1.0.1), metastudent-data-2 (>=1.0.0), perl
Description: predictor of Gene Ontology terms from protein sequence
Often, only the sequence of a protein is known, but
not its functions. Metastudent will try to predict
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[med-svn] r13883 - trunk/packages/metastudent-data-2/trunk/debian
Author: hampt-guest
Date: 2013-06-08 11:13:51 + (Sat, 08 Jun 2013)
New Revision: 13883
Modified:
trunk/packages/metastudent-data-2/trunk/debian/changelog
trunk/packages/metastudent-data-2/trunk/debian/control
trunk/packages/metastudent-data-2/trunk/debian/upstream
Log:
changed to metastudent-data-2
Modified: trunk/packages/metastudent-data-2/trunk/debian/changelog
===
--- trunk/packages/metastudent-data-2/trunk/debian/changelog2013-06-08
09:42:47 UTC (rev 13882)
+++ trunk/packages/metastudent-data-2/trunk/debian/changelog2013-06-08
11:13:51 UTC (rev 13883)
@@ -1,17 +1,5 @@
-metastudent-data (1.0.2-1~bpo70+1) unstable; urgency=low
+metastudent-data-2 (1.0.0-1~bpo70+1) unstable; urgency=low
- * New upstream release.
+ * Initial release
- -- Tobias Hamp Wed, 07 Jun 2013 20:41:08 +0200
-
-metastudent-data (1.0.1-2) unstable; urgency=low
-
- * Added missing build dependency rsync (Closes: #708715)
-
- -- Laszlo Kajan Wed, 08 May 2013 17:42:14 +0200
-
-metastudent-data (1.0.1-1) unstable; urgency=low
-
- * Initial release (Closes: #705537)
-
- -- Tobias Hamp Fri, 26 Apr 2013 07:43:57 +0200
+ -- Tobias Hamp Sat, 08 Jun 2013 17:43:57 +0200
Modified: trunk/packages/metastudent-data-2/trunk/debian/control
===
--- trunk/packages/metastudent-data-2/trunk/debian/control 2013-06-08
09:42:47 UTC (rev 13882)
+++ trunk/packages/metastudent-data-2/trunk/debian/control 2013-06-08
11:13:51 UTC (rev 13883)
@@ -1,20 +1,20 @@
-Source: metastudent-data
+Source: metastudent-data-2
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team
Uploaders: Tobias Hamp , Laszlo Kajan
-Build-Depends-Indep: blast2, debhelper (>=8~), rsync
+Build-Depends-Indep: debhelper (>=8~), rsync
Standards-Version: 3.9.4
Homepage: https://rostlab.org/owiki/index.php/Metastudent
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/metastudent-data/trunk/
-Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent-data/trunk/
+Vcs-Svn:
svn://svn.debian.org/debian-med/trunk/packages/metastudent-data-2/trunk/
+Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent-data-2/trunk/
-Package: metastudent-data
+Package: metastudent-data-2
Architecture: all
Homepage: http://www.rostlab.org
Pre-Depends: dpkg (>= 1.15.6~)
Depends: ${misc:Depends}
-Description: predictor of Gene Ontology terms from protein sequence - data
files
+Description: predictor of Gene Ontology terms from protein sequence - name
mapping file
Often, only the sequence of a protein is known, but
not its functions. Metastudent will try to predict
missing functional annotations through homology searches (BLAST).
@@ -23,4 +23,4 @@
terms from the Molecular Function Ontology (MFO) and the Biological Process
Ontology (BPO) and are associated with a reliability score.
.
- This package contains data files for metastudent.
+ This package contains a name mapping data file for metastudent.
Modified: trunk/packages/metastudent-data-2/trunk/debian/upstream
===
--- trunk/packages/metastudent-data-2/trunk/debian/upstream 2013-06-08
09:42:47 UTC (rev 13882)
+++ trunk/packages/metastudent-data-2/trunk/debian/upstream 2013-06-08
11:13:51 UTC (rev 13883)
@@ -1,4 +1,4 @@
-Name: metastudent-data
+Name: metastudent-data-2
Contact: Tobias Hamp
Homepage: https://rostlab.org/owiki/index.php/Metastudent
Reference:
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[med-svn] r13882 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2013-06-08 09:42:47 + (Sat, 08 Jun 2013) New Revision: 13882 Modified: trunk/packages/metastudent-data/trunk/debian/changelog Log: Removed GO term name mapping Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2013-06-08 09:23:52 UTC (rev 13881) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2013-06-08 09:42:47 UTC (rev 13882) @@ -1,9 +1,3 @@ -metastudent-data (1.0.2-1~bpo70+1) unstable; urgency=low - - * New upstream release. - - -- Tobias Hamp Wed, 07 Jun 2013 20:41:08 +0200 - metastudent-data (1.0.1-2) unstable; urgency=low * Added missing build dependency rsync (Closes: #708715) ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13880 - trunk/packages/metastudent-data/trunk/debian
Author: hampt-guest Date: 2013-06-07 21:28:03 + (Fri, 07 Jun 2013) New Revision: 13880 Modified: trunk/packages/metastudent-data/trunk/debian/changelog Log: Added GO term name mapping Modified: trunk/packages/metastudent-data/trunk/debian/changelog === --- trunk/packages/metastudent-data/trunk/debian/changelog 2013-06-07 15:15:59 UTC (rev 13879) +++ trunk/packages/metastudent-data/trunk/debian/changelog 2013-06-07 21:28:03 UTC (rev 13880) @@ -1,3 +1,9 @@ +metastudent-data (1.0.2-1~bpo70+1) unstable; urgency=low + + * New upstream release. + + -- Tobias Hamp Wed, 07 Jun 2013 20:41:08 +0200 + metastudent-data (1.0.1-2) unstable; urgency=low * Added missing build dependency rsync (Closes: #708715) ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r13839 - trunk/packages/metastudent/trunk/debian
Author: hampt-guest Date: 2013-06-05 14:43:13 + (Wed, 05 Jun 2013) New Revision: 13839 Modified: trunk/packages/metastudent/trunk/debian/changelog Log: 1.0.9-1 - new upstream release Modified: trunk/packages/metastudent/trunk/debian/changelog === --- trunk/packages/metastudent/trunk/debian/changelog 2013-06-05 12:49:45 UTC (rev 13838) +++ trunk/packages/metastudent/trunk/debian/changelog 2013-06-05 14:43:13 UTC (rev 13839) @@ -1,8 +1,8 @@ -metastudent (1.0.8-3) UNRELEASED; urgency=low +metastudent (1.0.9-1) UNRELEASED; urgency=low - * NOT RELEASED YET + * New upstream release. - -- Laszlo Kajan Thu, 16 May 2013 18:28:22 +0200 + -- Tobias Hamp Wed, 05 Jun 2013 16:41:08 +0200 metastudent (1.0.8-2) unstable; urgency=low ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
