This is an automated email from the git hooks/post-receive script. tdido-guest pushed a change to branch master in repository python-csb.
from 57b16f8 Somehow the changelog entry of initial version said unreleased which is obviosly not true (no interest to fiddle forth and back with tagging old version) new de1f8cb Imported Upstream version 1.2.1+dfsg new 40d5692 Merge tag 'upstream/1.2.1+dfsg' new e4347d2 * Modified debian/changelog to reflect update to latest upstream version The 3 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: PKG-INFO | 2 +- csb/__init__.py | 2 +- csb/apps/__init__.py | 10 +- csb/apps/buildhmm.py | 63 +- csb/apps/csfrag.py | 542 ++++++++ csb/apps/hhfrag.py | 302 ++++- csb/apps/hhsearch.py | 5 +- csb/apps/precision.py | 30 +- csb/bio/fragments/__init__.py | 207 ++- csb/bio/fragments/rosetta.py | 4 +- csb/bio/io/clans.py | 5 +- csb/bio/io/cs.py | 206 +++ csb/bio/io/fasta.py | 16 +- csb/bio/io/hhpred.py | 2 +- csb/bio/io/noe.py | 269 ++++ csb/bio/io/wwpdb.py | 1096 +++++++++++---- csb/bio/nmr/__init__.py | 1105 ++++++++++++++- csb/bio/nmr/resources/AtomConnectivity.xml | 812 +++++++++++ csb/bio/sequence/__init__.py | 21 +- csb/bio/sequence/alignment.py | 617 +++++++++ csb/bio/structure/__init__.py | 52 +- csb/build.py | 28 +- csb/io/__init__.py | 5 + csb/io/tsv.py | 38 +- csb/numeric/__init__.py | 16 +- csb/numeric/integrators.py | 10 +- csb/statistics/__init__.py | 4 +- csb/statistics/samplers/__init__.py | 12 +- csb/statistics/samplers/mc/__init__.py | 838 +----------- csb/statistics/samplers/mc/multichain.py | 1502 +++++++++++++++++++-- csb/statistics/samplers/mc/neqsteppropagator.py | 1239 +++++++++++++++++ csb/statistics/samplers/mc/propagators.py | 55 +- csb/statistics/samplers/mc/singlechain.py | 311 ++++- csb/test/__init__.py | 2 +- csb/test/cases/bio/fragments/__init__.py | 11 +- csb/test/cases/bio/hmm/__init__.py | 11 +- csb/test/cases/bio/io/clans/__init__.py | 24 +- csb/test/cases/bio/io/cs/__init__.py | 87 ++ csb/test/cases/bio/io/fasta/__init__.py | 4 +- csb/test/cases/bio/io/noe/__init__.py | 148 ++ csb/test/cases/bio/io/wwpdb/__init__.py | 194 ++- csb/test/cases/bio/nmr/__init__.py | 348 ++++- csb/test/cases/bio/sequence/alignment/__init__.py | 196 +++ csb/test/cases/bio/structure/__init__.py | 29 +- csb/test/cases/core/__init__.py | 22 +- csb/test/cases/io/__init__.py | 87 +- csb/test/cases/numeric/__init__.py | 59 +- csb/test/cases/statistics/samplers/__init__.py | 728 +++++++++- csb/test/data/1d3z.regular.pdb | 342 ++--- csb/test/data/2l01.v2.str | 31 + csb/test/data/2l01.v3.str | 45 + csb/test/data/Sparky.peaks | 5 + csb/test/data/Xeasy1.peaks | 9 + csb/test/data/Xeasy2.peaks | 8 + csb/test/data/csb.tsv | 2 +- csb/test/data/mapping.pdb | 12 + csb/test/data/mapping2.pdb | 10 + csb/test/data/mapping3.pdb | 9 + csb/test/data/modified.pdb | 16 + csb/test/data/modified2.pdb | 16 + csb/test/data/out.clans | 14 +- debian/changelog | 6 + debian/control | 4 +- 63 files changed, 10232 insertions(+), 1673 deletions(-) create mode 100644 csb/apps/csfrag.py create mode 100644 csb/bio/io/cs.py create mode 100644 csb/bio/io/noe.py create mode 100644 csb/bio/nmr/resources/AtomConnectivity.xml create mode 100644 csb/bio/sequence/alignment.py create mode 100644 csb/statistics/samplers/mc/neqsteppropagator.py create mode 100644 csb/test/cases/bio/io/cs/__init__.py create mode 100644 csb/test/cases/bio/io/noe/__init__.py create mode 100644 csb/test/cases/bio/sequence/alignment/__init__.py create mode 100644 csb/test/data/2l01.v2.str create mode 100644 csb/test/data/2l01.v3.str create mode 100644 csb/test/data/Sparky.peaks create mode 100644 csb/test/data/Xeasy1.peaks create mode 100644 csb/test/data/Xeasy2.peaks create mode 100644 csb/test/data/mapping.pdb create mode 100644 csb/test/data/mapping2.pdb create mode 100644 csb/test/data/mapping3.pdb create mode 100644 csb/test/data/modified.pdb create mode 100644 csb/test/data/modified2.pdb -- Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/python-csb.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit