Re: Ups, pbuilder chroot broken - here comes the real build error (Was: New version of phyml: Can't exec "gcc": No such file or directory)
Hi, On 17/08/16 14:36, Andreas Tille wrote: > On Wed, Aug 17, 2016 at 01:55:23PM +0100, James Cowgill wrote: >> >> I think there might be something up with your pbuilder chroot.s > > After updating this the strange error vanished - sorry for the noise. > >> At least >> the initial stages of the build work fine for me with sbuild (gcc errors >> out later though). > > So lets come to the real build errors of [1]: I just fixed the first issue > in a new patch (please git pull) but I do not understand this one: > > ... > gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O2 -msse > -fomit-frame-pointer -funroll-loops -Wempty-body -Wuninitialized > -I/usr/include/libhmsbeagle-1 -lhmsbeagle -ldl -c -o lk.o lk.c > lk.c: In function 'Update_PMat_At_Given_Edge': > lk.c:2449:31: error: invalid initializer >int p_matrices[1] = b_fcus->Pij_rr_idx; >^~ > lk.c:2450:31: error: invalid initializer >double branch_lens[1] = len; You can't initialize an array with a scalar value (double[] != double). Also, using an array of fixed size 1 is a code smell (why use an array at all?) The quick fix here is probably to wrap the values in curly braces to form a correct array initializer. James signature.asc Description: OpenPGP digital signature
Ups, pbuilder chroot broken - here comes the real build error (Was: New version of phyml: Can't exec "gcc": No such file or directory)
Hi James, On Wed, Aug 17, 2016 at 01:55:23PM +0100, James Cowgill wrote: > > I think there might be something up with your pbuilder chroot.s After updating this the strange error vanished - sorry for the noise. > At least > the initial stages of the build work fine for me with sbuild (gcc errors > out later though). So lets come to the real build errors of [1]: I just fixed the first issue in a new patch (please git pull) but I do not understand this one: ... gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O2 -msse -fomit-frame-pointer -funroll-loops -Wempty-body -Wuninitialized -I/usr/include/libhmsbeagle-1 -lhmsbeagle -ldl -c -o lk.o lk.c lk.c: In function 'Update_PMat_At_Given_Edge': lk.c:2449:31: error: invalid initializer int p_matrices[1] = b_fcus->Pij_rr_idx; ^~ lk.c:2450:31: error: invalid initializer double branch_lens[1] = len; ^~~ Makefile:1847: recipe for target 'lk.o' failed make[4]: *** [lk.o] Error 1 ... Any idea? Kind regards Andreas. [1] https://anonscm.debian.org/git/debian-med/phyml.git -- http://fam-tille.de
