RFS: python-libconf/2.0.1-1 [ITP] -- Reader/writer for the libconfig format
Package: sponsorship-requests Severity: wishlist Dear mentors, I am looking for a sponsor for my package "python-libconf". * Package name: python-libconf Version : 2.0.1-1 Upstream Author : Christian Aichinger * URL : https://github.com/Grk0/python-libconf * License : Expat * Vcs : https://salsa.debian.org/python-team/modules/python-libconf Section : python It builds those binary packages: python3-libconf - Reader/writer for the libconfig format (Python 3) To access further information about this package, please visit the following URL: https://mentors.debian.net/package/python-libconf Alternatively, one can download the package with dget using this command: dget -x https://mentors.debian.net/debian/pool/main/p/python-libconf/python-libconf_2.0.1-1.dsc Changes since the last upload: * Initial release (Closes: #952781) Regards, Bastian Germann
Re: Bug#937177: obitools: Python2 removal in sid/bullseye
On Sunday, January 12 2020, Andreas Tille wrote:
> On Sun, Jan 12, 2020 at 07:27:59AM -0500, Scott Kitterman wrote:
>> On Fri, 30 Aug 2019 07:28:59 + Matthias Klose wrote:
>> This
>> package is blocking several others. Would it be best to remove it? It can
>> always be re-introduced if a python3 port appears.
>
> Since some time I've pushed a 2to3 based port to Git. I've now fixed
> some issues of this and I wonder whether we might give it a try to do
> the port inside Debian. For the moment I'm running into the following
> issue:
>
>dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:217: cd
> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.7_obitools/build; python3.7
> -m unittest discover -v
> obitools (unittest.loader._FailedTest) ... ERROR
>
> ==
> ERROR: obitools (unittest.loader._FailedTest)
> --
> ImportError: Failed to import test module: obitools
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
> package = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in
> _get_module_from_name
> __import__(name)
> File
> "/build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.7_obitools/build/obitools/__init__.py",
> line 23, in
> from _obitools import BioSequence,NucSequence,AASequence, \
> ModuleNotFoundError: No module named '_obitools'
>
>
> --
> Ran 1 test in 0.000s
Hey Andreas,
I cannot reproduce this bug when building inside a clean schroot
(unstable). I don't know if the reason is because I don't have
python3.7 installed in the schroot anymore (it was removed recently, and
python3.8 is the default), or because there's something else different.
> FAILED (errors=1)
> E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1: cd
> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.7_obitools/build; python3.7
> -m unittest discover -v
> dh_auto_test: pybuild --test -i python{version} -p 3.7 returned exit code 13
> make: *** [debian/rules:15: build] Error 255
> dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
> I: copying local configuration
> E: Failed autobuilding of package
> I: user script
> /var/cache/pbuilder/build/cow.1543005/tmp/hooks/C99_failed_build starting
> Installing convenience apps: mc less bash-completion
> root@energija:/# cd build/obitools-1.2.13+dfsg/
> root@energija:/build/obitools-1.2.13+dfsg# find . -name "*.so"
> ./.pybuild/cpython3_3.7_obitools/build/obitools/options/_options.cpython-37m-x86_64-linux-gnu.so
>
>=
> ./.pybuild/cpython3_3.7_obitools/build/obitools/options/_bioseqfilter.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/profile/_profile.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/utils/_utils.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/_obitools.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/tools/_solexapairend.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/fasta/_fasta.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_upperbond.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_rassemble.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_freeendgapfm.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_nwsdnabyprot.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_assemble.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_freeendgap.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_qsrassemble.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_gprofilenws.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_dynamic.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_nws.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_lcs.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_qsassemble.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_profilenws.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_codonnws.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/format/_format.cpython-37m-x86_64-linux-gnu.so
> ./.pybuild/cpython3_3.7_obitools/build/obitools/format/generi
Re: Bug#937177: obitools: Python2 removal in sid/bullseye
Le sam. 7 mars 2020 à 06:12, Sergio Durigan Junior a
écrit :
> On Sunday, January 12 2020, Andreas Tille wrote:
>
> > On Sun, Jan 12, 2020 at 07:27:59AM -0500, Scott Kitterman wrote:
> >> On Fri, 30 Aug 2019 07:28:59 + Matthias Klose
> wrote:
> >> This
> >> package is blocking several others. Would it be best to remove it? It
> can
> >> always be re-introduced if a python3 port appears.
> >
> > Since some time I've pushed a 2to3 based port to Git. I've now fixed
> > some issues of this and I wonder whether we might give it a try to do
> > the port inside Debian. For the moment I'm running into the following
> > issue:
> >
> >dh_auto_test -O--buildsystem=pybuild
> > I: pybuild base:217: cd
> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.7_obitools/build; python3.7
> -m unittest discover -v
> > obitools (unittest.loader._FailedTest) ... ERROR
> >
> > ==
> > ERROR: obitools (unittest.loader._FailedTest)
> > --
> > ImportError: Failed to import test module: obitools
> > Traceback (most recent call last):
> > File "/usr/lib/python3.7/unittest/loader.py", line 470, in
> _find_test_path
> > package = self._get_module_from_name(name)
> > File "/usr/lib/python3.7/unittest/loader.py", line 377, in
> _get_module_from_name
> > __import__(name)
> > File
> "/build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.7_obitools/build/obitools/__init__.py",
> line 23, in
> > from _obitools import BioSequence,NucSequence,AASequence, \
> > ModuleNotFoundError: No module named '_obitools'
> >
> >
> > --
> > Ran 1 test in 0.000s
>
> Hey Andreas,
>
> I cannot reproduce this bug when building inside a clean schroot
> (unstable). I don't know if the reason is because I don't have
> python3.7 installed in the schroot anymore (it was removed recently, and
> python3.8 is the default), or because there's something else different.
>
I pushed in february during our sprint some updates in git fixing the
issue. However it implied lots of modification that may impact software as
it implied to do some choices on types (bytes vs str for example with c
binding), without really knowing the impact
We may push the package but other packages using might be broken
On other side, package will be removed.
So either we push an update, knowing that it may not be fully fonctional,
or let it go.
Olivier
> > FAILED (errors=1)
> > E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1:
> cd /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.7_obitools/build;
> python3.7 -m unittest discover -v
> > dh_auto_test: pybuild --test -i python{version} -p 3.7 returned exit
> code 13
> > make: *** [debian/rules:15: build] Error 255
> > dpkg-buildpackage: error: debian/rules build subprocess returned exit
> status 2
> > I: copying local configuration
> > E: Failed autobuilding of package
> > I: user script
> /var/cache/pbuilder/build/cow.1543005/tmp/hooks/C99_failed_build starting
> > Installing convenience apps: mc less bash-completion
> > root@energija:/# cd build/obitools-1.2.13+dfsg/
> > root@energija:/build/obitools-1.2.13+dfsg# find . -name "*.so"
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/options/_
> options.cpython-37m-x86_64-linux-gnu.so
>=
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/options/_
> bioseqfilter.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/profile/_
> profile.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/utils/_
> utils.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/_
> obitools.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/tools/_
> solexapairend.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/fasta/_
> fasta.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_
> upperbond.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_
> rassemble.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_
> freeendgapfm.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_
> nwsdnabyprot.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_
> assemble.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_
> freeendgap.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_
> qsrassemble.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_
> gprofilenws.cpython-37m-x86_64-linux-gnu.so
> > ./.pybuild/cpython3_3.7_obitools/build/obitools/align/_
