Bug#951674: [Debichem-devel] Building Kalzium with OpenBabel: bad CMake module
Hello,
On 2020-07-26 10:23, Michael Banck wrote:
> Hi,
>
> On Fri, Jul 24, 2020 at 08:31:12AM +0300, mer...@debian.org wrote:
>> On 2020-07-19 00:31, John Scott wrote:
>>> See the bug hunting at [1]: it seems that even in OpenBabel 3.1.1,
>>> the CMake module probably wrongfully hardcodes a path and makes it not work
>>> on
>>> Debian.
>>
>> Indeed, there seems to be a problem with paths in OpenBabel CMake
>> modules. OpenBabel3Config.cmake seems suspicious: ${OpenBabel3_DIR} does
>> not seem to be set anywhere, and the following paths too get incorrect
>> values:
>>
>> * OpenBabel3_INCLUDE_DIRS: should be /usr/include/openbabel3
>> * OpenBabel3_EXPORTS_FILE: should be
>> /usr/lib//cmake/openbabel3/OpenBabel3_EXPORTS.cmake
>> * OpenBabel3_LIBRARIES (maybe?)
>>
>> Not sure if this issue is relevant outside Debian, hence the upstream
>> confusion. I would suggest patching OpenBabel CMake modules in Debian. I
>> volunteer to do that if no one comes up with a better solution.
>
> Without having looked at the problem in detail, it sounds like it's
> worth filing an issue in OpenBabel upstream as well, or is there one
> already?
Good idea. I have filed the issue in OpenBabel upstream [1], as well as
Debian BTS [2].
[1] https://github.com/openbabel/openbabel/issues/2264
[2] https://bugs.debian.org/966405
Best,
Andrius
Processed: libopenbabel-dev: CMake files do not reflect installation paths
Processing control commands: > forwarded -1 https://github.com/openbabel/openbabel/issues/2264 Bug #966405 [libopenbabel-dev] libopenbabel-dev: CMake files do not reflect installation paths Set Bug forwarded-to-address to 'https://github.com/openbabel/openbabel/issues/2264'. > block 951674 by -1 Bug #951674 [kalzium] kalzium: molecular editor is not available Bug #954412 [kalzium] kalzium: Fail to use molecular editor button,please fix this bug.Thanks team 951674 was blocked by: 961836 951674 was not blocking any bugs. Added blocking bug(s) of 951674: 966405 954412 was blocked by: 961836 954412 was not blocking any bugs. Added blocking bug(s) of 954412: 966405 -- 951674: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=951674 954412: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=954412 966405: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966405 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
kproperty is marked for autoremoval from testing
kproperty 3.2.0-2 is marked for autoremoval from testing on 2020-08-22 It is affected by these RC bugs: 957410: kproperty: ftbfs with GCC-10
Bug#966381: kate has no mode for graphviz files
Package: kate
Version: 4:20.04.1-1
Severity: wishlist
Tags: upstream
Dear Maintainer,
kate has no mode for graphviz/dot files.
Here is an example of a gv file:
digraph test {
1 [shape=box] // invtriangle ou triangle ou house ou trapezium ou diamond
1 -> 2 -> 3 -> 4 -> 5;
2 -> 4;
1 -> 3 [style = "dotted"];
2 -> 5;
}
Here is a URL https://www.graphviz.org/pdf/dotguide.pdf.
The abstract grammar is page 34.
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: i386 (i686)
Kernel: Linux 5.7.0-1-686-pae (SMP w/3 CPU threads)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE,
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8),
LANGUAGE=fr_FR:fr:en_GB:en
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages kate depends on:
ii kate5-data 4:20.04.1-1
ii kio 5.70.1-1
ii ktexteditor-katepart 5.70.1-1
ii libc62.31-2
ii libkf5bookmarks5 5.70.0-1
ii libkf5completion55.70.0-1
ii libkf5configcore55.70.0-1
ii libkf5configgui5 5.70.0-1
ii libkf5configwidgets5 5.70.0-1
ii libkf5coreaddons55.70.0-1
ii libkf5crash5 5.70.0-1
ii libkf5dbusaddons55.70.0-1
ii libkf5guiaddons5 5.70.0-2
ii libkf5i18n5 5.70.0-1
ii libkf5iconthemes55.70.0-1
ii libkf5jobwidgets55.70.0-1
ii libkf5kiocore5 5.70.1-1
ii libkf5kiofilewidgets55.70.1-1
ii libkf5kiowidgets55.70.1-1
ii libkf5newstuff5 5.70.0-1
ii libkf5parts5 5.70.0-1
ii libkf5plasma55.70.1-1
ii libkf5service-bin5.70.0-1
ii libkf5service5 5.70.0-1
ii libkf5syntaxhighlighting55.70.0-1
ii libkf5texteditor55.70.1-1
ii libkf5textwidgets5 5.70.0-1
ii libkf5threadweaver5 5.70.0-2
ii libkf5wallet-bin 5.70.0-1
ii libkf5wallet55.70.0-1
ii libkf5widgetsaddons5 5.70.0-1
ii libkf5windowsystem5 5.70.0-1
ii libkf5xmlgui55.70.0-1+b1
ii libqt5core5a 5.14.2+dfsg-4
ii libqt5dbus5 5.14.2+dfsg-4
ii libqt5gui5 5.14.2+dfsg-4
ii libqt5sql5 5.14.2+dfsg-4
ii libqt5widgets5 5.14.2+dfsg-4
ii libqt5xml5 5.14.2+dfsg-4
ii libstdc++6 10.2.0-3
ii plasma-framework 5.70.1-1
ii qml-module-org-kde-kquickcontrolsaddons 5.70.0-1
ii qml-module-qtquick-layouts 5.14.2+dfsg-3
ii qml-module-qtquick2 5.14.2+dfsg-3
Versions of packages kate recommends:
ii sonnet-plugins 5.70.0-1
Versions of packages kate suggests:
pn darcs
ii exuberant-ctags 1:5.9~svn20110310-13
ii git 1:2.28.0~rc2-1
ii khelpcenter 4:20.04.2-1
ii konsole-kpart4:20.04.2-1
ii mercurial5.4.1-2
ii subversion 1.14.0-1
-- no debconf information
