merge of pkg-scicomp into debian science (Was: Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description))

2010-08-15 Thread Sylvestre Ledru
Le vendredi 13 août 2010 à 08:52 +0200, Andreas Tille a écrit :
 
 The merge of the two science projects will definitely not come because
 Sylvestre has suggested it.  His offer to do the move is really brave
 -
 but I guess he needs at least some kind of confirmation Yes, I'm fine
 if you just do it.  You probably have observed cases in the past
 where
 a maintainer was defeating others from touching his packages.
Indeed, as said previously, I am happy to perform this task for anyone
having packages into pkg-scicomp.

Thanks,
Sylvestre





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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-15 Thread Andreas Tille
On Sat, Aug 14, 2010 at 10:18:53AM -0500, Jordi Gutiérrez Hermoso wrote:
   Suggests: libqrupdate-dev
 
  to the mathematics-dev tasks.
 
 Ah, so wait, these are tasks like tasksel tasks? I see...

The name task was definitely inspired by tasksel and the blends-dev
tools build not only metapackages but also a tasksel control file which
enables to use also tasksel for installing the packages in question.
However, the tasksel mehod does not differentiate between Depends and
Suggests (because tasksel does not know this difference).
 
 Yes, that's accurate. Someone who *really* wants to do QR
 factorisations would benefit from this package, but it's a very niche
 use outside of how it's used transparently from Octave. It does have
 some interesting computational ideas from its author.

Thanks for the clarification

 Andreas. 

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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-14 Thread Jordi Gutiérrez Hermoso
On 12 August 2010 16:33, Andreas Tille andr...@an3as.eu wrote:
 Well, now I just noticed this and I added

  Suggests: libqrupdate-dev

 to the mathematics-dev tasks.

Ah, so wait, these are tasks like tasksel tasks? I see...

 Please confirm that you agree with me that this package has some
 relevance for developing mathematical applications (even if it is
 not highly relevant because it is mostly used in connection with
 Octave and not primarily in self written applications).

Yes, that's accurate. Someone who *really* wants to do QR
factorisations would benefit from this package, but it's a very niche
use outside of how it's used transparently from Octave. It does have
some interesting computational ideas from its author.

Thanks,
- Jordi G. H.


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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-13 Thread Andreas Tille
On Fri, Aug 13, 2010 at 12:09:49AM +0200, Christian T. Steigies wrote:
 
 I hope you don't kill me either... I have not yet played with tags and
 tasks, and did not see any links to relevant documentation in your email.

I just had the impression that I have given way to many hints to the
relevant Blends doc[1] that people become bored about this.  Obviosely
this is not the case and there is in fact no real need if you read this
all.  However, your e-mail is in principle sufficient to fullfill my
cry for help (probably pronounced a bit to engaged yesterday - sorry
if I sounded to harsh).
 
 I maintain GLE,

I have added it to the viewing task in SVN[2] - so this was basically
the information I needed from you as a maintainer of a package with
relevance for scientific work.  You probably could have added the

   Depends: gle-graphics

yourself ... but if nobody has pointed you to the docs it is idefinitely
not your fault (and I'll keep on bothering you all with this stuff ;-)).

 which is still in pkg-scicomp and I guess it should be moved
 to debian-science (this has been suggested before for this or some other
 package I (co)maintain. Sombody offered to do it).

The merge of the two science projects will definitely not come because
Sylvestre has suggested it.  His offer to do the move is really brave -
but I guess he needs at least some kind of confirmation Yes, I'm fine
if you just do it.  You probably have observed cases in the past where
a maintainer was defeating others from touching his packages.
 
 http://packages.qa.debian.org/g/gle-graphics.html
 
 This package fits into the viewing task, as it is similar to gnuplot, grace,
 gri, only better (since I have been using it for 15+ years ;-)
 
 How do I add it to the task?

As I said I've just done it and I'm volunteering to add other packages
after a notice because it is quite simple and does not really need much
time.  I just started the job to render the Debian Science tasks
manually in addition to the cron job to let you all see the effect of
this change and thus you should find your package at the science viewing
task page[3] in a short time.

 I just found this page:
 http://debtags.alioth.debian.org/edit.html?pkg=gle-graphics
 Should I add the use::viewing tag? What does this button... hmm

Adding DebTags to your packages is also a very good idea.  The tasks
pages support this by providing a link in case a package is not yet
DebTagged.  You can read more about DebTags here[4] and you can
effectively use the DebTags database by using axi-cache (the successor
of ept-cache), a nifty tool which is some kind of so perfectly hidden
that no user does it know (as well as the Blends stuff obviosely).

 Anything else?

Once you are navigating to the gle-graphics section on[3] you will
notice that in contrast to other packages gle-graphics has no
screenshot.  Just follow the according link and add a screenshot.
Blends is also about Quality Assurance.  I really hope this stuff
makes sense to you (and you will spreed the word ;-)!)
 
 And how will the package move from pkg-scicomp to science? I wouldn't mind
 switching to bzr during this move...

I guess this was explained before but I think the Draft Debian Science
Policy[5] will answer this question.  In short:

  Maintainer: Debian Science Team 
debian-science-maintain...@lists.alioth.debian.org
  Uploaders: you[, other maintainer]

  Vcs-Git: git://git.debian.org/?p=debian-science/gle-graphics.git   OR
  Vcs-Svn: svn://svn.debian.org/svn/debian-science/packages/gle-graphics/trunk/

(Git or SVN at your preference, no bzr).  Subscribing to the maintainers
list (prehaps the commit list) as well as to the discussion list[6]
makes sense.  That's all.

Kind regards

Andreas.

[1] http://blends.alioth.debian.org/blends
[2] 
http://svn.debian.org/viewsvn/blends/projects/science/trunk/debian-science/tasks/
[3] http://blends.alioth.debian.org/science/tasks/viewing
[4] http://debtags.alioth.debian.org/
[5] http://debian-science.alioth.debian.org/debian-science-policy.html
[6] http://lists.debian.org/debian-science

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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-13 Thread Andreas Tille
Dear Christophe,

On Fri, Aug 13, 2010 at 08:52:25AM +0200, Christophe Prud'homme wrote:
 I worked a little bit on the tasks but I don't have the permission to write
 on the svn server
 Can't create directory '/svn/blends/db/transactions/2353-1.txn': Permission
 denied

Hmmm, that's strange, I'll contact alioth admin about this.  In any
case I just added you to the project so this should be fixed.
 
 Attached you will find the patch.

Thanks for the patch.  It's applied.

Kind regards

   Andreas.

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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-13 Thread Christophe Prud'homme
Andreas,

On Fri, Aug 13, 2010 at 9:30 AM, Andreas Tille ti...@debian.org wrote:

 Dear Christophe,

 On Fri, Aug 13, 2010 at 08:52:25AM +0200, Christophe Prud'homme wrote:
  I worked a little bit on the tasks but I don't have the permission to
 write
  on the svn server
  Can't create directory '/svn/blends/db/transactions/2353-1.txn':
 Permission
  denied

 Hmmm, that's strange, I'll contact alioth admin about this.  In any
 case I just added you to the project so this should be fixed.

Let me know how it goes. I definitely will update the tasks, this is very
important
that it is as complete as possible. Thanks for sending this (reminder) email
I probably missed it before. I saw that madlib upload was one of the reasons
that you send it ;)




  Attached you will find the patch.
 Thanks for the patch.  It's applied.


Thanks. Here is another one attached (gmsh and slepc)

Best regards
C.
-- 
Debian Developer (Scientific applications)
Prof. at Univ. Grenoble in Applied Math.
Index: engineering-dev
===
--- engineering-dev	(revision 2354)
+++ engineering-dev	(working copy)
@@ -37,3 +37,6 @@

 Depends: libmadlib-dev
 Why: Mesh adaptation
+
+Depends: libslepc3.0.0-dev
+Why: Generalized and standard eigenvalue solver framework, applications to modal analysis
Index: viewing
===
--- viewing	(revision 2354)
+++ viewing	(working copy)
@@ -35,6 +35,8 @@

 Depends: gle-graphics

+Depends: gmsh
+
 Suggests: texlive-pictures

 Suggests: pgplot5
@@ -73,7 +75,7 @@
 Homepage:  http://pgfplots.sourceforge.net/
 License: GPLv3
 WNPP: 514751
-Responsible: OHURA Makoto oh...@debian.org
+Responsible: OHURA Makoto oh...@debian.org
 Pkg-Description: TeX package to draw normal and/or logarithmic plots directly in TeX
  This package provides tools to generate plots and labeled axes
  easily. It draws normal plots, logplots and semi-logplots. Axis
Index: mathematics-dev
===
--- mathematics-dev	(revision 2354)
+++ mathematics-dev	(working copy)
@@ -25,9 +25,6 @@
 Depends: libsuperlu3-dev
 Why: solver

-Suggests: libslepc2.3.2-dev
-Why: non-free
-
 Depends: libglpk-dev
 Why: linear programming

@@ -67,6 +64,7 @@
 Depends: dolfin-dev

 Depends: libslepc3.0.0-dev
+Why: Generalized and standard eigenvalue solver framework

 Depends:  petsc-dev, libtrilinos-dev



Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-13 Thread أحمد المحمودي
Where does libverilog-perl fit: electronics ? or electronics-dev (which 
does not exist) ?

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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-13 Thread Andreas Tille
On Fri, Aug 13, 2010 at 10:59:20AM +0200,   wrote:
 Where does libverilog-perl fit: electronics ? or electronics-dev (which 
 does not exist) ?

IMHO we should assemble an electronics-dev task either for Squeeze+1 or
right now with a certain set of relevant packages.  I would support the
latter in case we manage to assemble this set soonish and IMHO release
managers are quite open to this given the fact that the freeze came
somehow unexpected and we are not really adding new code.

Kind regards

 Andreas.

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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-13 Thread Andreas Tille
On Fri, Aug 13, 2010 at 10:53:09AM +0200, Christophe Prud'homme wrote:
  Hmmm, that's strange, I'll contact alioth admin about this.  In any
  case I just added you to the project so this should be fixed.
 
 Let me know how it goes. I definitely will update the tasks, this is very
 important

Well, you are now member of the Blends project which is a hack around the
not properly adjusted ACLs but probably this is a reasonable thing anyway.

 Thanks. Here is another one attached (gmsh and slepc)

Could you please try again to commit this just to verify whether it works
now?

Thanks

   Andreas.

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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-13 Thread Christian T. Steigies
On Fri, Aug 13, 2010 at 08:52:46AM +0200, Andreas Tille wrote:
 On Fri, Aug 13, 2010 at 12:09:49AM +0200, Christian T. Steigies wrote:
  
  I hope you don't kill me either... I have not yet played with tags and
  tasks, and did not see any links to relevant documentation in your email.
 
 I just had the impression that I have given way to many hints to the
 relevant Blends doc[1] that people become bored about this.  Obviosely
 this is not the case and there is in fact no real need if you read this
 all.  However, your e-mail is in principle sufficient to fullfill my
 cry for help (probably pronounced a bit to engaged yesterday - sorry
 if I sounded to harsh).

That is a lot to read...
  
  I maintain GLE,
 
 I have added it to the viewing task in SVN[2] - so this was basically
 the information I needed from you as a maintainer of a package with
 relevance for scientific work.  You probably could have added the
 
Depends: gle-graphics
 
 yourself ... but if nobody has pointed you to the docs it is idefinitely
 not your fault (and I'll keep on bothering you all with this stuff ;-)).

Ok, thanks. I guess I should update the description sometimes... that comes
directly from the control file? I see there is no website mentioned, does
this also come from the control file?
http://glx.sourceforge.net/
 
  which is still in pkg-scicomp and I guess it should be moved
  to debian-science (this has been suggested before for this or some other
  package I (co)maintain. Sombody offered to do it).
 
 The merge of the two science projects will definitely not come because
 Sylvestre has suggested it.  His offer to do the move is really brave -
 but I guess he needs at least some kind of confirmation Yes, I'm fine
 if you just do it.  You probably have observed cases in the past where
 a maintainer was defeating others from touching his packages.

Oh, but this package is MINE... ;-)
No, I am fine with it, but I just know enough svn to check in my changes. I
did not get svn-buildpackage to work (thats one of the reasons I prefer bzr)
and I do not want to experiment to move the svn directory from pkg-scicomp
to pkg-science. I just want to use the version control, not write a thesis
about it.
  
  http://packages.qa.debian.org/g/gle-graphics.html
  
  This package fits into the viewing task, as it is similar to gnuplot, grace,
  gri, only better (since I have been using it for 15+ years ;-)
  
  How do I add it to the task?
 
 As I said I've just done it and I'm volunteering to add other packages
 after a notice because it is quite simple and does not really need much
 time.  I just started the job to render the Debian Science tasks
 manually in addition to the cron job to let you all see the effect of
 this change and thus you should find your package at the science viewing
 task page[3] in a short time.

Yes, I have seen it there, thanks. Just as I said, it is better than
gnuplot, it comes before ;-)
 
  I just found this page:
  http://debtags.alioth.debian.org/edit.html?pkg=gle-graphics
  Should I add the use::viewing tag? What does this button... hmm
 
 Adding DebTags to your packages is also a very good idea.  The tasks
 pages support this by providing a link in case a package is not yet
 DebTagged.  You can read more about DebTags here[4] and you can
 effectively use the DebTags database by using axi-cache (the successor
 of ept-cache), a nifty tool which is some kind of so perfectly hidden
 that no user does it know (as well as the Blends stuff obviosely).

I thought the tag would add it to the tasks, why does it have to be done
twice?
 
  Anything else?
 
 Once you are navigating to the gle-graphics section on[3] you will
 notice that in contrast to other packages gle-graphics has no
 screenshot.  Just follow the according link and add a screenshot.
 Blends is also about Quality Assurance.  I really hope this stuff
 makes sense to you (and you will spreed the word ;-)!)

I will have a look. There are many screenshots in the glx examples page, I
don't know which to pick... can I upload two?

  And how will the package move from pkg-scicomp to science? I wouldn't mind
  switching to bzr during this move...
 
 I guess this was explained before but I think the Draft Debian Science
 Policy[5] will answer this question.  In short:
 
   Maintainer: Debian Science Team 
 debian-science-maintain...@lists.alioth.debian.org
   Uploaders: you[, other maintainer]
 
   Vcs-Git: git://git.debian.org/?p=debian-science/gle-graphics.git   OR
   Vcs-Svn: 
 svn://svn.debian.org/svn/debian-science/packages/gle-graphics/trunk/
 
 (Git or SVN at your preference, no bzr).  Subscribing to the maintainers
 list (prehaps the commit list) as well as to the discussion list[6]
 makes sense.  That's all.

And even more to read... I think the package that was suggested for the move
is xmds.
http://packages.qa.debian.org/x/xmds.html
That should probably be added to the tasks as well, but I am not quite sure
where. It solves differential 

Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-13 Thread Andreas Tille
On Fri, Aug 13, 2010 at 11:40:16AM +0200, Christian T. Steigies wrote:
  all.  However, your e-mail is in principle sufficient to fullfill my
  cry for help (probably pronounced a bit to engaged yesterday - sorry
  if I sounded to harsh).
 
 That is a lot to read...

Yes, but parts of it might suffice (or as I said using me as a proxy for
editing the tasks files if you just know that you should give a ping
here).

 Ok, thanks. I guess I should update the description sometimes... that comes
 directly from the control file?

The English description, yes.  The translation (I guess you might read the
German locale) comes from DDTP translations.

 I see there is no website mentioned, does
 this also come from the control file?
 http://glx.sourceforge.net/

Yes.  You should set a Homepage field in your control file.  (Have you
noticed that these pages are working as a QA means ;-))

  The merge of the two science projects will definitely not come because
  Sylvestre has suggested it.  His offer to do the move is really brave -
  but I guess he needs at least some kind of confirmation Yes, I'm fine
  if you just do it.  You probably have observed cases in the past where
  a maintainer was defeating others from touching his packages.
 
 Oh, but this package is MINE... ;-)
 No, I am fine with it, but I just know enough svn to check in my changes. I
 did not get svn-buildpackage to work

Me too, but I do the commits manually and just ignore svn-buildpackage ...

 (thats one of the reasons I prefer bzr)
 and I do not want to experiment to move the svn directory from pkg-scicomp
 to pkg-science. I just want to use the version control, not write a thesis
 about it.

Fine.

 Yes, I have seen it there, thanks. Just as I said, it is better than
 gnuplot, it comes before ;-)

I hope the fact that it is now in the Blends task will increase its
popcon stats to reflect this feature. ;-)
  
  Adding DebTags to your packages is also a very good idea.  The tasks
  pages support this by providing a link in case a package is not yet
  DebTagged.  You can read more about DebTags here[4] and you can
  effectively use the DebTags database by using axi-cache (the successor
  of ept-cache), a nifty tool which is some kind of so perfectly hidden
  that no user does it know (as well as the Blends stuff obviosely).
 
 I thought the tag would add it to the tasks, why does it have to be done
 twice?

DebTags reflect more features than just putting it into a certain workfield.
The Debian Junior Blend did some experiments with mapping tasks and DebTags
directly but there was not so much success.  That's a long story.  If you
are interested (I mean really interested) you might bring this up on
debian-ble...@l.d.o.  I'm constantly thinking about how we can connect
DebTags and Blends better but have not yet found a really good solution.
  
 I will have a look. There are many screenshots in the glx examples page, I
 don't know which to pick... can I upload two?

The doc on screenshots.debian.net is really short. ;-))
The very short answer is: You can upload as much as you want.

Only one is directly shown at the tasks page and I would say a that the
screenshot which is displayed at the tasks page is randomly choosen
(which means I just pick one from a list and have no real control which
one this is - probably the first uploaded but no guarantee).  However,
the user gets the information if there are more than one screenshots
available.
 
  (Git or SVN at your preference, no bzr).  Subscribing to the maintainers
  list (prehaps the commit list) as well as to the discussion list[6]
  makes sense.  That's all.
 
 And even more to read... I think the package that was suggested for the move
 is xmds.
 http://packages.qa.debian.org/x/xmds.html
 That should probably be added to the tasks as well, but I am not quite sure
 where. It solves differential equations, so probably math. There are many
 examples for physics, engineering, chemistry. So it could be in those tasks
 as well?

I simply added xmds to mathematics.  If anybody else thinks it should be
in any further task, please rise your voice here.
 
Thanks for your input

 Andreas.

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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-12 Thread Jordi Gutiérrez Hermoso
On 12 August 2010 15:26, Andreas Tille andr...@an3as.eu wrote:
 sorry for quoting myself, but may be the previously choosen subject
 might have hidden the problem a bit and after some investigation into
 Debian Science tasks files I came to the conclusion that they are not
 properly maintained.  :-(

I don't know what you're talking about, so instead of reading
documentation everywhere, I hope you don't kill me if I'm lazy and
just ask you directly:

I only maintain qrupdate for now. Is there something I need to do that
I haven't done?


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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-12 Thread Andreas Tille
On Thu, Aug 12, 2010 at 03:47:43PM -0500, Jordi Gutiérrez Hermoso wrote:
 
 I don't know what you're talking about, so instead of reading
 documentation everywhere, I hope you don't kill me if I'm lazy and
 just ask you directly:

I recently manifested a personal policy: I will not kill a fellow
Debian Science supporter - so you are quite safe. ;-)
 
 I only maintain qrupdate for now. Is there something I need to do that
 I haven't done?

Well, now I just noticed this and I added 

  Suggests: libqrupdate-dev

to the mathematics-dev tasks.  This entry puts your package onto the
list displayed at

  http://blends.alioth.debian.org/science/tasks/mathematics-dev

after the next cron job (and I hope I do not regret my policy mentioned
above and you will at least follow THIS link ;-)).  Please confirm that
you agree with me that this package has some relevance for developing
mathematical applications (even if it is not highly relevant because it
is mostly used in connection with Octave and not primarily in self
written applications).  This is what I understood from the description.

Are there any other fields (tasks; see menu on the left of URL above
to get a list) where this package might be relevant.

Thanks for the hint to qrupdate

 Andreas.

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Re: Maintainers of scientific applications: Please maintain tasks files! (Was: Bug#592701: science-statistics: typo in package description)

2010-08-12 Thread Christian T. Steigies
Moin,
On Thu, Aug 12, 2010 at 11:33:11PM +0200, Andreas Tille wrote:
 On Thu, Aug 12, 2010 at 03:47:43PM -0500, Jordi Gutiérrez Hermoso wrote:
  
  I don't know what you're talking about, so instead of reading
  documentation everywhere, I hope you don't kill me if I'm lazy and
  just ask you directly:
 
 I recently manifested a personal policy: I will not kill a fellow
 Debian Science supporter - so you are quite safe. ;-)

I hope you don't kill me either... I have not yet played with tags and
tasks, and did not see any links to relevant documentation in your email.

I maintain GLE, which is still in pkg-scicomp and I guess it should be moved
to debian-science (this has been suggested before for this or some other
package I (co)maintain. Sombody offered to do it).

http://packages.qa.debian.org/g/gle-graphics.html

This package fits into the viewing task, as it is similar to gnuplot, grace,
gri, only better (since I have been using it for 15+ years ;-)

How do I add it to the task? I just found this page:
http://debtags.alioth.debian.org/edit.html?pkg=gle-graphics
Should I add the use::viewing tag? What does this button... hmm
Anything else?

And how will the package move from pkg-scicomp to science? I wouldn't mind
switching to bzr during this move...

Christian


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