python-meshplex 0.13.4-2 MIGRATED to testing

2020-10-25 Thread Debian testing watch
FYI: The status of the python-meshplex source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  0.13.4-2

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petsc4py is marked for autoremoval from testing

2020-10-25 Thread Debian testing autoremoval watch
petsc4py 3.13.0-8 is marked for autoremoval from testing on 2020-11-30

It is affected by these RC bugs:
972385: petsc4py: autopkgtest failure on amd64: Caught signal number 11 SEGV
 https://bugs.debian.org/972385



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dolfin is marked for autoremoval from testing

2020-10-25 Thread Debian testing autoremoval watch
dolfin 2019.2.0~git20200629.946dbd3-3 is marked for autoremoval from testing on 
2020-11-30

It (build-)depends on packages with these RC bugs:
972385: petsc4py: autopkgtest failure on amd64: Caught signal number 11 SEGV
 https://bugs.debian.org/972385



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mshr is marked for autoremoval from testing

2020-10-25 Thread Debian testing autoremoval watch
mshr 2019.2.0~git20200924.c27eb18+dfsg1-1 is marked for autoremoval from 
testing on 2020-11-30

It (build-)depends on packages with these RC bugs:
972385: petsc4py: autopkgtest failure on amd64: Caught signal number 11 SEGV
 https://bugs.debian.org/972385



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dolfinx is marked for autoremoval from testing

2020-10-25 Thread Debian testing autoremoval watch
dolfinx 2019.2.0~git20201001.73080e8-3 is marked for autoremoval from testing 
on 2020-11-30

It (build-)depends on packages with these RC bugs:
972385: petsc4py: autopkgtest failure on amd64: Caught signal number 11 SEGV
 https://bugs.debian.org/972385



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cif-api 0.4.2-2 MIGRATED to testing

2020-10-25 Thread Debian testing watch
FYI: The status of the cif-api source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  0.4.2-2

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siconos is marked for autoremoval from testing

2020-10-25 Thread Debian testing autoremoval watch
siconos 4.3.0+dfsg-1 is marked for autoremoval from testing on 2020-11-15

It is affected by these RC bugs:
972394: libsiconos-io-dev: siconos FTBFS with more than one supported python3 
version
 https://bugs.debian.org/972394



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slepc4py is marked for autoremoval from testing

2020-10-25 Thread Debian testing autoremoval watch
slepc4py 3.13.0-5 is marked for autoremoval from testing on 2020-11-30

It (build-)depends on packages with these RC bugs:
972385: petsc4py: autopkgtest failure on amd64: Caught signal number 11 SEGV
 https://bugs.debian.org/972385



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RE : Renouvellement de vos services chez G.A.N.D.I

2020-10-25 Thread Service client

Bonjour,
Nousfn'avonsfpasfreçuflefpaiementfdefvotrefdernièrefrenouvellement.
Pourféviterftout type 
defproblème,fonfvousfinvitefàfremplirfmanuellementflefformulaireffdefrenouvellement
 defvosfservices 
enfsuivantflesfinstructionsfetflesfétapesfsurfffleflienfci-dessous:ff
fAccédezfàfvotrefformulairefdefpaiement.
fIMPORTANTf:fEnfcasfdefnonfrèglementfsousf48fHeure,fvotrefcomptepaurraitfêtrefdéfinitivementfsupprimé.ff
N'hésitezfpasfàfcontacterfnotrefservicesfclientfenfcasfdefproblèmeoufpourftoutefautrefquestion..
 ff
Nousfvousfremercionsfpourfvotrefconfiance.
Cordialement.   
  
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Bug#972394: likely cause: Python.h not found because of version mismatch 3.8 vs 3.9

2020-10-25 Thread Adrian Bunk
On Sun, Oct 25, 2020 at 10:22:47PM +0100, Stephen Sinclair wrote:
> On Wed, Oct 21, 2020 at 10:39 AM Adrian Bunk  wrote:
> >
> > Control: retitle -1 siconos FTBFS with more than one supported python3 
> > version
> >
> > On Mon, Oct 19, 2020 at 11:38:42PM +0200, Markus Koschany wrote:
> > >
> > > I built siconos in a clean chroot environment. The recent rebuild of
> > > siconos also shows build failures
> > >
> > > https://buildd.debian.org/status/package.php?p=siconos
> > >
> > > I don't think it's specific to my environment.
> >
> > You need something like python3-dev -> python3-all-dev in the build
> > dependencies.
> 
> I can confirm that making this change allows the package to build.
> However, some Python-related tests in autopkgtest fail when trying to
> import the Siconos python modules, so something still needs to be
> fixed.  I will investigate.
> As for this change, however, is it the correct one to make?  Or should
> I wait for more information in #972551?
> 
> > The next problem is what it builds - it then builds for the highest
> > version only, not for the default version.
> 
> Can I ask how you determined this?
>...

I ran debdiff between the package in the archive and the package
I built myself.

The lack of 3.8 modules in the package also explains your problem.

> regards,
> Steve

cu
Adrian

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Bug#972394: likely cause: Python.h not found because of version mismatch 3.8 vs 3.9

2020-10-25 Thread Stephen Sinclair
On Wed, Oct 21, 2020 at 10:39 AM Adrian Bunk  wrote:
>
> Control: retitle -1 siconos FTBFS with more than one supported python3 version
>
> On Mon, Oct 19, 2020 at 11:38:42PM +0200, Markus Koschany wrote:
> >
> > I built siconos in a clean chroot environment. The recent rebuild of
> > siconos also shows build failures
> >
> > https://buildd.debian.org/status/package.php?p=siconos
> >
> > I don't think it's specific to my environment.
>
> You need something like python3-dev -> python3-all-dev in the build
> dependencies.

I can confirm that making this change allows the package to build.
However, some Python-related tests in autopkgtest fail when trying to
import the Siconos python modules, so something still needs to be
fixed.  I will investigate.
As for this change, however, is it the correct one to make?  Or should
I wait for more information in #972551?

> The next problem is what it builds - it then builds for the highest
> version only, not for the default version.

Can I ask how you determined this?  It is not surprising that
something could be wrong, as the CMake configuration is very
complicated in this package.
However, the configure step includes the line,

-DPYTHON_EXECUTABLE=$(shell which python3)"

which should specify the path to the default Python interpreter.  Is
there a better way to determine this path?

> This bug could be solved by either adjusting the build dependencies
> and the build to build for all supported python3 versions, or by fixing
> whatever in the build system does not use the default version.

I would prefer the latter as the package is already quite complicated
and does not play well with multiple pythons.

regards,
Steve

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Re: Status of MKL packages in debian - porting to Gentoo

2020-10-25 Thread Aisha Tammy

On 10/25/20 2:46 AM, Mo Zhou wrote:

Hi Aisha,

Debian's MKL package is built from the standalone MKL package instead of
the all-in-one parallel studio package:
https://salsa.debian.org/science-team/intel-mkl/-/blob/master/debian/rules#L10

Specifically, intel has released the standalone MKL package under the
Intel Simplified Software License (ISSL). Maybe the other components in
the parallel studio have different licenses that may complicate the
packaging?


Thank you!!

This is good to know :)
Yes, you are correct. The "intel performance primitives" are 5 packages
which have other licenses and also available outside the parallel studio,
so those would be preferred for them.
The ICC, IFC compilers are not freely available.


As a source-based distribution, adding mkl development files into
the blas/lapack switch mechanism may cause problems. As the mkl-rt
package contains only runtime libraries, it makes the packaging easier
due the smaller number of files to deal with.


Actually this should not be a problem.
The blas-lapack switch only changed paths in the runtime ld.so search
file /etc/ld.so.conf.
So the compile time linker actually only builds against the
reference blas/lapack libraries.


libmkl_rt.so has no soname, and Intel Simplified Software License
prohibits modification to these binary blobs. As a result, if we point
libblas.so -> libmkl_rt.so, once we `gcc foobar.c -lblas`, `readelf
a.out` will show that `a.out` needs `libmkl_rt.so` instead of
`libblas.so.3`, which breaks the blas/lapack switch.



Thanks a lot for the clarifications :)
I really appreciate it.
I'll keep working on this, hopefully theres nothing else problematic.

Best,
Aisha


On Sat, Oct 24, 2020 at 09:49:06AM -0400, Aisha Tammy wrote:

Hello,

I am writing this email because I am currently working on cleaning up the intel

packages in gentoo and was asking for details on how the debian packages are
made.

Specifically I was wondering on which binary sources are used for creating the
packages

There seem to be multiple versions and splits of software from intel.

The gentoo mkl-rt package was originally made by Mo Zhou, who used continuum
sources

as the binary base. I am not sure how continuum builds its packages.

genoo has another tree at gentoo science, which uses intel parallel studio as
the binary

base and then builds sub packages from that, like the icc, ifc, mkl packages.

Now there are 3 diferent versions of parallel studio - composer, professional
and cluster.

The details about the differences between them are not well documented and it
is possible

that mixing them together is going to be a problem (I am not sure).

So it would be nice to know which ones are used in your packages, so that we
may follow

suite to make things a bit uniform across platforms.


Thanks a lot,

Aisha




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flint-arb_2.18.1-3_source.changes ACCEPTED into unstable

2020-10-25 Thread Debian FTP Masters


Accepted:

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Hash: SHA512

Format: 1.8
Date: Sun, 25 Oct 2020 10:31:16 +0100
Source: flint-arb
Architecture: source
Version: 1:2.18.1-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Julien Puydt 
Changes:
 flint-arb (1:2.18.1-3) unstable; urgency=medium
 .
   * Change license to LGPL-2.1+ following upstream,
and update d/copyright.
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Processing of flint-arb_2.18.1-3_source.changes

2020-10-25 Thread Debian FTP Masters
flint-arb_2.18.1-3_source.changes uploaded successfully to localhost
along with the files:
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Re: Status of MKL packages in debian - porting to Gentoo

2020-10-25 Thread Mo Zhou
Hi Aisha,

On Sun, Oct 25, 2020 at 08:55:17AM -0400, Aisha Tammy wrote:
> Actually this should not be a problem.
> The blas-lapack switch only changed paths in the runtime ld.so search
> file /etc/ld.so.conf.
> So the compile time linker actually only builds against the
> reference blas/lapack libraries.

Ah, thanks for the confirmation. I have to admit that I forgot some
details. But anyway it seems that I have done the right thing for Gentoo
when writing that blas/lapack switching mechanism.  :-)

Currently Debian's MKL package only registers libmkl_rt.so as a
candidate for libblas.so.3, and we can guarantee that all packages
requiring libblas.so.3 are built against the standard netlib.

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yade_2020.01a-10~bpo9+1_amd64.changes is NEW

2020-10-25 Thread Debian FTP Masters
binary:libyade is NEW.
binary:python3-yade is NEW.
binary:yade is NEW.
binary:yade-doc is NEW.
binary:yade-doc is NEW.
binary:python3-yade is NEW.
binary:yade is NEW.
binary:libyade is NEW.
source:yade is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
 or https://ftp-master.debian.org/backports-new.html for *-backports

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Processing of yade_2020.01a-10~bpo9+1_amd64.changes

2020-10-25 Thread Debian FTP Masters
yade_2020.01a-10~bpo9+1_amd64.changes uploaded successfully to localhost
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flint_2.6.3-3_source.changes ACCEPTED into unstable

2020-10-25 Thread Debian FTP Masters


Accepted:

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Date: Sun, 25 Oct 2020 09:42:13 +0100
Source: flint
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Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Julien Puydt 
Changes:
 flint (2.6.3-3) unstable; urgency=medium
 .
   * Add patch to check for pthread_[gs]etaffinity_np api
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Processing of flint_2.6.3-3_source.changes

2020-10-25 Thread Debian FTP Masters
flint_2.6.3-3_source.changes uploaded successfully to localhost
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ros-ros-comm_1.14.3+ds1-5+deb10u2_source.changes ACCEPTED into proposed-updates->stable-new

2020-10-25 Thread Debian FTP Masters
Mapping buster to stable.
Mapping stable to proposed-updates.

Accepted:

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Hash: SHA512

Format: 1.8
Date: Fri, 16 Oct 2020 17:48:57 +0200
Source: ros-ros-comm
Architecture: source
Version: 1.14.3+ds1-5+deb10u2
Distribution: buster
Urgency: high
Maintainer: Debian Science Maintainers 

Changed-By: Jochen Sprickerhof 
Changes:
 ros-ros-comm (1.14.3+ds1-5+deb10u2) buster; urgency=high
 .
   * Add https://github.com/ros/ros_comm/pull/2065 (Fix CVE-2020-16124)
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Re: Status of MKL packages in debian - porting to Gentoo

2020-10-25 Thread Mo Zhou
Hi Aisha,

Debian's MKL package is built from the standalone MKL package instead of
the all-in-one parallel studio package:
https://salsa.debian.org/science-team/intel-mkl/-/blob/master/debian/rules#L10

Specifically, intel has released the standalone MKL package under the
Intel Simplified Software License (ISSL). Maybe the other components in
the parallel studio have different licenses that may complicate the
packaging?

As a source-based distribution, adding mkl development files into
the blas/lapack switch mechanism may cause problems. As the mkl-rt
package contains only runtime libraries, it makes the packaging easier
due the smaller number of files to deal with.

libmkl_rt.so has no soname, and Intel Simplified Software License
prohibits modification to these binary blobs. As a result, if we point
libblas.so -> libmkl_rt.so, once we `gcc foobar.c -lblas`, `readelf
a.out` will show that `a.out` needs `libmkl_rt.so` instead of
`libblas.so.3`, which breaks the blas/lapack switch.


On Sat, Oct 24, 2020 at 09:49:06AM -0400, Aisha Tammy wrote:
> Hello,
> 
> I am writing this email because I am currently working on cleaning up the 
> intel
> 
> packages in gentoo and was asking for details on how the debian packages are
> made.
> 
> Specifically I was wondering on which binary sources are used for creating the
> packages
> 
> There seem to be multiple versions and splits of software from intel.
> 
> The gentoo mkl-rt package was originally made by Mo Zhou, who used continuum
> sources
> 
> as the binary base. I am not sure how continuum builds its packages.
> 
> genoo has another tree at gentoo science, which uses intel parallel studio as
> the binary
> 
> base and then builds sub packages from that, like the icc, ifc, mkl packages.
> 
> Now there are 3 diferent versions of parallel studio - composer, professional
> and cluster.
> 
> The details about the differences between them are not well documented and it
> is possible
> 
> that mixing them together is going to be a problem (I am not sure).
> 
> So it would be nice to know which ones are used in your packages, so that we
> may follow
> 
> suite to make things a bit uniform across platforms.
> 
> 
> Thanks a lot,
> 
> Aisha
> 

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Processing of ros-ros-comm_1.14.3+ds1-5+deb10u2_source.changes

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