Processed: geopandas: test fail with pandas 2.x on 32 bit - int32 vs int64 mismatch

[Debian Bug Tracking System]

Processing control commands:

> block 1043240 by -1
Bug #1043240 [python3-pandas] transition: pandas 1.5 -> 2.1
1043240 was blocked by: 1044054 1044065 1044057 1053943 1053946 1044074 1044077 
1043093 1053939 1053940 1063274 1053942 1053948 1044064 1044055 1044067 1053941 
1043968 1044075 1044070 1044053 1044068 1044069 1044076 1053944 1053947 1044061 
1044073 1044056 1053945 1044059 1044058 1044071 1044063 1044052 1050144 1044078 
1044066 1044079 1044060 1044072
1043240 was blocking: 1056828
Added blocking bug(s) of 1043240: 1063435

-- 
1043240: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1043240
1063435: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1063435
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ros-geometry 1.13.2-10 is marked for autoremoval from testing on 2024-03-15

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1062092: coin3: NMU diff for 64-bit time_t transition
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xtensor 0.25.0-1 MIGRATED to testing

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FYI: The status of the xtensor source package
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1061941: foma: NMU diff for 64-bit time_t transition
 https://bugs.debian.org/1061941



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 https://bugs.debian.org/1061972



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python-quantities_0.15.0-1_source.changes ACCEPTED into unstable

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Thank you for your contribution to Debian.



Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 08 Feb 2024 03:10:45 +0530
Source: python-quantities
Architecture: source
Version: 0.15.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Yogeswaran Umasankar 
Changes:
 python-quantities (0.15.0-1) unstable; urgency=medium
 .
   [ Yogeswaran Umasankar ]
   * Team upload.
   * New upstream version 0.15.0.
 .
   [ Nilesh Patra ]
   * Add Builddep on python3-setuptools-scm and pybuild-plugin-pyproject
Checksums-Sha1:
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python-quantities_0.15.0.orig.tar.gz
 585ffaaa174cdc5dba84914b86a5861e73c452a3 4128 
python-quantities_0.15.0-1.debian.tar.xz
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python-quantities_0.15.0-1_amd64.buildinfo
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python-quantities_0.15.0-1_amd64.buildinfo
Files:
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python-quantities_0.15.0-1.dsc
 f40d1b1c56c3320b64403048dffc 91327 python optional 
python-quantities_0.15.0.orig.tar.gz
 7375bf086034c44e4b4fccb3517f7ee4 4128 python optional 
python-quantities_0.15.0-1.debian.tar.xz
 3b0608672378f300cd1d9ffa59ee4d65 6562 python optional 
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Processed: Re: Bug#1063410: ros-bloom's autopkg tests fail with Python 3.12

[Debian Bug Tracking System]

Processing control commands:

> tag -1 moreinfo
Bug #1063410 [src:ros-bloom] ros-bloom's autopkg tests fail with Python 3.12
Added tag(s) moreinfo.

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Bug#1063410: ros-bloom's autopkg tests fail with Python 3.12

[Jochen Sprickerhof]

Control: tag -1 moreinfo

Hi Matthias,

* Matthias Klose  [2024-02-07 20:55]:

Package: src:ros-bloom
Version: 0.11.2-6
Severity: important
Tags: sid trixie ftbfs
User: debian-pyt...@lists.debian.org
Usertags: python3.12

ros-bloom's autopkg tests fail with Python 3.12

[...]
578s /usr/lib/python3/dist-packages/rosdistro/distribution.py:35: in 

578s from .manifest_provider.git import git_manifest_provider, 
git_source_manifest_provider
578s 
/usr/lib/python3/dist-packages/rosdistro/manifest_provider/git.py:44: 
in 

578s from rosdistro.vcs import Git, ref_is_hash
578s /usr/lib/python3/dist-packages/rosdistro/vcs.py:39: in 
578s from distutils.version import LooseVersion
578s E   ModuleNotFoundError: No module named 'distutils'


This looks like the same as #1061840 and was already fixed in ros-bloom 
and ros-rosdistro. Can you please retry with the versions in testing?

I can't reproduce this and debci is also all green.

Cheers Jochen


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Bug#1063410: ros-bloom's autopkg tests fail with Python 3.12

[Matthias Klose]

Package: src:ros-bloom
Version: 0.11.2-6
Severity: important
Tags: sid trixie ftbfs
User: debian-pyt...@lists.debian.org
Usertags: python3.12

ros-bloom's autopkg tests fail with Python 3.12

[...]
578s = test session starts 
==

578s platform linux -- Python 3.12.1, pytest-7.4.4, pluggy-1.3.0
578s rootdir: /tmp/tmp.BgIMXvxH90
578s collected 2 items / 5 errors
578s
578s  ERRORS 

578s  ERROR collecting test/system_tests/test_bloom_setup.py 


578s /usr/lib/python3/dist-packages/bloom/rosdistro_api.py:60: in 
578s import rosdistro
578s /usr/lib/python3/dist-packages/rosdistro/__init__.py:51: in 
578s from .distribution import Distribution  # noqa
578s /usr/lib/python3/dist-packages/rosdistro/distribution.py:35: in 

578s from .manifest_provider.git import git_manifest_provider, 
git_source_manifest_provider
578s 
/usr/lib/python3/dist-packages/rosdistro/manifest_provider/git.py:44: in 


578s from rosdistro.vcs import Git, ref_is_hash
578s /usr/lib/python3/dist-packages/rosdistro/vcs.py:39: in 
578s from distutils.version import LooseVersion
578s E   ModuleNotFoundError: No module named 'distutils'
578s
578s During handling of the above exception, another exception occurred:
578s test/system_tests/test_bloom_setup.py:13: in 
578s from bloom.config import BLOOM_CONFIG_BRANCH
578s /usr/lib/python3/dist-packages/bloom/config.py:60: in 
578s from bloom.rosdistro_api import get_non_eol_distros_prompt
578s /usr/lib/python3/dist-packages/bloom/rosdistro_api.py:67: in 
578s error("rosdistro was not detected, please install it.", 
file=sys.stderr,

578s /usr/lib/python3/dist-packages/bloom/logging.py:280: in error
578s sys.exit(msg)
578s E   SystemExit: rosdistro was not detected, please install 
it.
578s __ ERROR collecting 
test/system_tests/test_catkin_release.py ___

578s test/system_tests/test_catkin_release.py:12: in 
578s from vcstools.vcs_abstraction import get_vcs_client
578s /usr/lib/python3/dist-packages/vcstools/__init__.py:47: in 
578s from vcstools.git import GitClient
578s /usr/lib/python3/dist-packages/vcstools/git.py:63: in 
578s from distutils.version import LooseVersion
578s E   ModuleNotFoundError: No module named 'distutils'
578s
578s During handling of the above exception, another exception occurred:
578s test/system_tests/test_catkin_release.py:15: in 
578s sys.exit(1)
578s E   SystemExit: 1
578s --- Captured stderr 


578s vcstools was not detected, please install it.
578s ___ ERROR collecting test/unit_tests/test_config.py 


578s /usr/lib/python3/dist-packages/bloom/rosdistro_api.py:60: in 
578s import rosdistro
578s /usr/lib/python3/dist-packages/rosdistro/__init__.py:51: in 
578s from .distribution import Distribution  # noqa
578s /usr/lib/python3/dist-packages/rosdistro/distribution.py:35: in 

578s from .manifest_provider.git import git_manifest_provider, 
git_source_manifest_provider
578s 
/usr/lib/python3/dist-packages/rosdistro/manifest_provider/git.py:44: in 


578s from rosdistro.vcs import Git, ref_is_hash
578s /usr/lib/python3/dist-packages/rosdistro/vcs.py:39: in 
578s from distutils.version import LooseVersion
578s E   ModuleNotFoundError: No module named 'distutils'
578s
578s During handling of the above exception, another exception occurred:
578s test/unit_tests/test_config.py:6: in 
578s from bloom.config import validate_track_versions
578s /usr/lib/python3/dist-packages/bloom/config.py:60: in 
578s from bloom.rosdistro_api import get_non_eol_distros_prompt
578s /usr/lib/python3/dist-packages/bloom/rosdistro_api.py:67: in 
578s error("rosdistro was not detected, please install it.", 
file=sys.stderr,

578s /usr/lib/python3/dist-packages/bloom/logging.py:280: in error
578s sys.exit(msg)
578s E   SystemExit: rosdistro was not detected, please install 
it.
578s __ ERROR collecting test/unit_tests/test_packages.py 
___

578s /usr/lib/python3/dist-packages/bloom/rosdistro_api.py:60: in 
578s import rosdistro
578s /usr/lib/python3/dist-packages/rosdistro/__init__.py:51: in 
578s from .distribution import Distribution  # noqa
578s /usr/lib/python3/dist-packages/rosdistro/distribution.py:35: in 

578s from .manifest_provider.git import git_manifest_provider, 
git_source_manifest_provider
578s 
/usr/lib/python3/dist-packages/rosdistro/manifest_provider/git.py:44: in 


578s from rosdistro.vcs import Git, ref_is_hash
578s /usr/lib/python3/dist-packages/rosdistro/vcs.py:39: in 
578s from distutils.version import LooseVersion
578s E   ModuleNotFoundError: No module named 'distutils'
578s
578s During handling of the above exception, another exception occurred:
578s 

Processed: add patch

[Debian Bug Tracking System]

Processing control commands:

> tags -1 + patch
Bug #1061813 [src:mpi4py] mpi4py fails its autopkg tests with Python 3.12
Added tag(s) patch.

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Bug#1061813: add patch

[Matthias Klose]

Control: tags -1 + patch

patch at
http://launchpadlibrarian.net/713303806/mpi4py_3.1.5-4_3.1.5-4ubuntu1.diff.gz

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Bug#1063409: mpi4py accesses the net for the build

[Matthias Klose]

Package: src:mpi4py
Version: 3.1.5-4
Severity: serious
Tags: sid trixie

at least the first repository should be available in the python3-doc 
package.


[...]
make -C docs/source/usrman/ html man info latexpdf SPHINXOPTS="-D 
today=\"January 14, 2024\""

make[2]: Entering directory '/<>/docs/source/usrman'
Running Sphinx v7.2.6
making output directory... done
[autosummary] generating autosummary for: appendix.rst, citing.rst, 
index.rst, install.rst, intro.rst, mpi4py.MPI.rst, mpi4py.futures.rst, 
mpi4py.rst, mpi4py.run.rst, mpi4py.util.dtlib.rst, mpi4py.util.pkl5.rst, 
mpi4py.util.rst, overview.rst, reference.rst, tutorial.rst
[autosummary] generating autosummary for: 
/<>/docs/source/usrman/reference/mpi4py.MPI.rst


loading intersphinx inventory from https://docs.python.org/3/objects.inv...
loading intersphinx inventory from 
https://numpy.org/doc/stable/objects.inv...


WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not 
fetchable due to : 
HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded 
with url: /doc/stable/objects.inv (Caused by ProxyError('Cannot connect 
to proxy.', NewConnectionError('object at 0x7fec6bad3e90>: Failed to establish a new connection: [Errno 
111] Connection refused')))

WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://docs.python.org/3/objects.inv' not 
fetchable due to : 
HTTPSConnectionPool(host='docs.python.org', port=443): Max retries 
exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect 
to proxy.', NewConnectionError('object at 0x7fec6baa4550>: Failed to establish a new connection: [Errno 
111] Connection refused')))

building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 15 source files that are out of date

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ngspetsc_0.0~git20240130.0c8a05b-1_amd64.changes is NEW

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binary:python-ngspetsc-doc is NEW.
binary:python3-ngspetsc is NEW.
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Bug#1063049: visp: NMU diff for 64-bit time_t transition

[Fabien Spindler]

Dear,

Thanks for this patch. If I understand well you will apply the patch.
I don't have to apply it to the upstream. I'm right?

Regards
Fabien

Le 04/02/2024 à 19:19, Steve Langasek a écrit :

Source: visp
Version: 3.6.0-2
Severity: serious
Tags: patch pending sid trixie
Justification: library ABI skew on upgrade
User: debian-...@lists.debian.org
Usertags: time-t

NOTICE: these changes must not be uploaded to unstable yet!

Dear maintainer,

As part of the 64-bit time_t transition required to support 32-bit
architectures in 2038 and beyond
(https://wiki.debian.org/ReleaseGoals/64bit-time), we have identified
visp as a source package shipping runtime libraries whose ABI
either is affected by the change in size of time_t, or could not be
analyzed via abi-compliance-checker (and therefore to be on the safe
side we assume is affected).

To ensure that inconsistent combinations of libraries with their
reverse-dependencies are never installed together, it is necessary to
have a library transition, which is most easily done by renaming the
runtime library package.

Since turning on 64-bit time_t is being handled centrally through a change
to the default dpkg-buildflags (https://bugs.debian.org/1037136), it is
important that libraries affected by this ABI change all be uploaded close
together in time.  Therefore I have prepared a 0-day NMU for visp
which will initially be uploaded to experimental if possible, then to
unstable after packages have cleared binary NEW.

Please find the patch for this NMU attached.

If you have any concerns about this patch, please reach out ASAP.  Although
this package will be uploaded to experimental immediately, there will be a
period of several days before we begin uploads to unstable; so if information
becomes available that your package should not be included in the transition,
there is time for us to amend the planned uploads.



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Kernel: Linux 6.5.0-14-generic (SMP w/12 CPU threads; PREEMPT)
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lapack_3.12.0-3_source.changes ACCEPTED into unstable

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Accepted:

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Date: Wed, 07 Feb 2024 12:30:40 +0100
Source: lapack
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Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Changes:
 lapack (3.12.0-3) unstable; urgency=medium
 .
   * Add Breaks of liblapacke against older liblapack.so.3 flavours.
 This prevents incorrect combinations where liblapacke needs symbols that
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pcl_1.14.0+dfsg-1_multi.changes is NEW

[Debian FTP Masters]

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petsc4py_3.19.6-6_source.changes ACCEPTED into unstable

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Thank you for your contribution to Debian.



Accepted:

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Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 petsc4py (3.19.6-6) unstable; urgency=medium
 .
   * debian patch revert_cython_pin_PR6720.patch also reverts upstream
 PR#6746 and PR#6748.
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Processing of pcl_1.14.0+dfsg-1_multi.changes

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pcl_1.14.0+dfsg-1_multi.changes uploaded successfully to localhost
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petsc4py_3.19.6-5_source.changes ACCEPTED into unstable

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Thank you for your contribution to Debian.



Accepted:

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Format: 1.8
Date: Wed, 07 Feb 2024 11:12:01 +0100
Source: petsc4py
Architecture: source
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Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 petsc4py (3.19.6-5) unstable; urgency=medium
 .
   * debian patch revert_cython_pin_PR6720.patch reverts upstream
 PR#6720 which pinned cython to 0.29.36. For the debian build the
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slicot_5.9~20240205.gita037f7e-1_source.changes ACCEPTED into unstable

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Accepted:

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Hash: SHA512

Format: 1.8
Date: Wed, 07 Feb 2024 09:54:26 +0100
Source: slicot
Architecture: source
Version: 5.9~20240205.gita037f7e-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Changes:
 slicot (5.9~20240205.gita037f7e-1) unstable; urgency=medium
 .
   * New upstream version 5.9~20240205.gita037f7e
   * build-system-fixes.patch: drop patch, no longer needed
   * d/rules: adapt to new Makefile variable names
   * d/libslicot0.symbols: add new symbols
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