Re: Comments from ftpmaster regarding spdep Debian package
On Wed, 30 Jul 2014, Andreas Tille wrote: Hi Roger, On Wed, Jul 30, 2014 at 09:36:22PM +0200, Roger Bivand wrote: Hi Andreas, This isn't a patch to my spdep/inst/README file. No, it's not! :-) I have no knowledge of any debian/copyright file, and cannot take responsibility for that This was never intended - it was just for our ftpmasters because its their responsibility to verify the copyright + license of each file we want to upload. Sorry if this was confusing. (I don't think installing from source is a problem for non-OSX/Windows users; I do not use Debian systems, and do not know anything about their packaging systems other than very bad experiences with people with messed up GIS packages). If you want me to patch anything, diff from spdep/inst/README on R-forge. In particular: Copyright: 2005 Yongwan Chun, Michael Tiefelsdorf and Roger Bivand License: GPL-2+ looks very wrong. Well, the line above this was Files: R/SpatialFiltering.R in front of the Copyright/License paragraph. We need to list all explicite Copyright statement inside the code. I can not see in how far this should be in conflict with your spdep/DESCRIPTION file. Please understand that the by-file copyrights are not important in R packages that I have written and maintain. The DESCRIPTION file is the root definition. I'm not prepared to check every file in spdep (or other packages) for copyright definitions, as for R purposes these are covered globally. If Debian need to list all explicit Copyright statement inside the code, that is a policy choice that is non-conformant with R packaging practice. The dates are almost all wrong, and the names are often wrong. There are more details in the ChangeLog, but even they are not consistent. Often changes are made based on user wishes on our mailing list without clear attribution by person (idea by NN, code changes by me). Sometimes there are comments, but not always. R/SpatialFiltering.R was written by Chun, Tiefelsdorf and myself, and has been modified by me since 2005. The list of contributors is in spdep/DESCRIPTION in R standard parsable form; +Files: R/bptest.sarlm.R +Copyright: 1998 Joseph O'Rourke orou...@cs.smith.edu isn't the correct file - should be src/soigraph.c. Uhhmmm, perhaps I misinterpretet your first answer. We have to troublesome files. Would you please consider reading the original mail here: No. http://lists.alioth.debian.org/pipermail/debian-science-maintainers/2014-July/026470.html I'd be grateful if you'd run any (unneeded) copyright file by me before proceeding. I hope not to do any unneeded work. The Debian copyright file is required for any Debian package and you can have a look here: http://anonscm.debian.org/viewvc/debian-science/packages/R/r-cran-spdep/trunk/debian/copyright?view=markup I'd be more than happy if you could clarify the open issues for the two files src/soigraph.c This is the problematic file which I covered in my earlier reply. R/bptest.sarlm.R The code is from a GPL 2 | 3 R package (when copied only GPL2, subsequently 2 | 3 (but not 2+, either 2 or 3, not any beyond 3 if they ever emerge). in a format like this. No way. The Debian formats are no help to me in what I do. If you need that format, you should create it. If such a file is needed, it should only point to the correct file within the R package (otherwise they will get out of sync). Since we are packaging more than R packages in Debian we can not drop this general requirement and we need to stick to the given format. I agree that keeping these files in sync is a bit troublesome but I have no choice but providing such a file (which works for 500 R packages in Debian). As you can see, the decision of a master is of very little use s/master/ftpmaster/ = the gate keeper of the Debian package pool. to me, I'll humour your attempts if you do things right, but have no need to see spdep distributed in this way - Debian users should IMO always install R packages from source to avoid unintended incompatibilities. The rationale why I intend to package spdep is that we have a certain set of R packages packaged for Debian for very good reasons and now it turned out that spdep is used as a new dependency to run a test suite of some other packages. So this is a dependency problem generated by some other R package that imports from or depends on spdep? That is, spatial data analysis is tangential to your needs? That makes me even less inclined to help. Which package? My guess is stargazer, so the easy solution is to tell stargazer to de-list spdep (the model output from models fitted in spdep is totally misunderstood and mangled by stargazer omitting the spatial coefficoents - I told the stargazer maintainer about this long ago, and asked him to fix it, which he didn't). Unless you explain why I should spend any more time on this, it isn't going anywhere, and you are wasting time on spdep. I
Re: Comments from ftpmaster regarding spdep Debian package
Hi Roger, I'm very astonished that this thread which started with two very simple questions exagerated to such a time consuming discussion. Since I read a lot of frustration in you mail and no chance to clarify things easily I just repeat the main point: inst/README says: File: src/soigraph.c is copyright (c) 2001 by Nicholas Lewin-Koh and is subject to the licence at the foot of this file, but also contains subroutines TwoCirclesxx and SubVec, which are adapted for R and Double precision coordinates by Nicholas Lewin-Koh, from Computational Geometry in C, Joseph O.Rourke, Cambridge University Press (1998). Copyright for those subroutines remains his. Can you please confirm that the license is really GPLv2+? [ ] yes [ ] no Sorry for the obviously failed attempt to explain what we would like to know from you. Kind regards Andreas. -- http://fam-tille.de -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
This 5 amazing TED Talks inspire publishers like you
TED stands for Technology, Education and Design. Fortunately... The Best TED Talks On Publishing You Should See For Inspiration == TED is an inspiring conference bringing together all the brilliant minds from all over the world. I am going to share with you 5 videos that provide knowledge and inspiration. From design, through case studies, to marketing riffs » Read more http://blog.presspadapp.com/best-ted-talks-publishing-see-inspiration/ If you like what we do, give us a little bit of love on Social Media. Thanks for all your Likes and Follows! - Michael Opydo Digital Publishing Guide - a Free Magazine App about content marketing and mobile apps. Whether you already publish on tablets or you are looking for resources – you come to the right place. Download this free Digital Publishing Guide magazine and learn how to publish and build revenue on App Store » Download Free App http://dpgmag.com/ To unsubscribe please click here ( http://email.presspadmail.com/wf/unsubscribe?upn=GA3tWWLb1-2FLi-2BYT1t27j3JLLUFaQ4VTCTdtdpdIIUs-2B9uIMZ4SpZMTx-2BzOVitvDxgDk1OVWnoj1arnOrt1GnDBngqiIn1FpRNiIS1iel3FYKSlm663guom6MNHB3eRtoPFU54iI-2F-2Fu1y2t0w-2BQXaNZc1-2BaimNmJULB-2FHHIw6WZl9uhe8FOm0yIRGTidRX6t1hsob90curtI-2Bod4Eg3Y5tw6Jx-2BEmgnq0hT-2BsQj1UuAZDPgRtJWdaO48WdIa7dz7gwjg49HYZT4wcEmoKVFp1voSWkU4qyGglHkoOnzAj53sMxTn3xWmeVYI5XBqq6L8pYL1YxADKHi8xhOzMe6S8OTY-2Fw3BxhuPSAphZMFQd1h0xDFLtECg7TEfBfy7iUNclwcH8JEVn-2FzSLhT6mRFObw3LR4b6UQg-2F2X5xEzi6r2Exl25oKEYhvOz1iHoqlOupJ ) Michael from PressPad Kupa 3/12, Krakow, , 31-057-- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
oce_0.16-2_amd64.changes ACCEPTED into experimental, experimental
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Format: 1.8 Date: Tue, 22 Jul 2014 19:21:02 +0200 Source: oce Binary: liboce-foundation9 liboce-modeling9 liboce-visualization9 liboce-ocaf-lite9 liboce-ocaf9 oce-draw liboce-foundation-dev liboce-modeling-dev liboce-ocaf-lite-dev liboce-ocaf-dev liboce-visualization-dev Architecture: source amd64 Version: 0.16-2 Distribution: experimental Urgency: medium Maintainer: Debian Science Maintainers debian-science-maintainers@lists.alioth.debian.org Changed-By: Denis Barbier barb...@debian.org Description: liboce-foundation-dev - OpenCASCADE Community Edition CAE platform library development fi liboce-foundation9 - OpenCASCADE Community Edition CAE platform shared library liboce-modeling-dev - OpenCASCADE Community Edition CAE platform library development fi liboce-modeling9 - OpenCASCADE Community Edition CAE platform shared library liboce-ocaf-dev - OpenCASCADE Community Edition CAE platform library development fi liboce-ocaf-lite-dev - OpenCASCADE Community Edition CAE platform library development fi liboce-ocaf-lite9 - OpenCASCADE Community Edition CAE platform shared library liboce-ocaf9 - OpenCASCADE Community Edition CAE platform shared library liboce-visualization-dev - OpenCASCADE Community Edition CAE platform library development fi liboce-visualization9 - OpenCASCADE Community Edition CAE platform shared library oce-draw - OpenCASCADE Community Edition CAE platform shared library Changes: oce (0.16-2) experimental; urgency=medium . * debian/liboce-foundation9.lintian-overrides: overrides binary-or-shlib-defines-rpath lintian warning, libTKernel.so has to dlopen shared libraries (a.k.a plugins) which have been put into a private repository. . oce (0.16-1) experimental; urgency=medium . * New upstream version. * debian/control: drop dependency on libxmu-dev, it is no more used. * debian/patches/NCollection-align-64bit.patch: Patch dropped, applied upstream. * debian/patches/include-oce-config.patch: Patch dropped, applied upstream. Checksums-Sha1: 4780718a1fc130e64cdfe1205c667e59f8bd6e93 2143 oce_0.16-2.dsc 1a82573796d5941cd9cf69bab9005b7397bc6a8a 24522468 oce_0.16.orig.tar.gz 8a73c61209be5ff9d1cef4e619630b0c88473df1 73824 oce_0.16-2.debian.tar.xz f7866345caf5d488ff08fafcaa322ab526f483af 1229122 liboce-foundation9_0.16-2_amd64.deb 5723158bf798a3cd58becb46405b2b1de9befee5 11885108 liboce-modeling9_0.16-2_amd64.deb ee8aec017be5509971d5318fa5ea96a82599d977 3095298 liboce-visualization9_0.16-2_amd64.deb 0cd49cd9dc0841ebedb4fcf43bca3494bc7513e9 1156722 liboce-ocaf-lite9_0.16-2_amd64.deb d057af97ee95ab3e88f9988f2faddd0961d565c9 741298 liboce-ocaf9_0.16-2_amd64.deb d70b4a6ea9a2d2f0c13331290ccd3873c5d07322 1974810 oce-draw_0.16-2_amd64.deb d7bbe988a1c46776e3859f7a33c04f7123be5322 854388 liboce-foundation-dev_0.16-2_amd64.deb 9c55aaa84aed7759c50311fce233e2c7fc982e7e 2149666 liboce-modeling-dev_0.16-2_amd64.deb d776caa3e0d507c93cda469a95716ef7824782f4 332858 liboce-ocaf-lite-dev_0.16-2_amd64.deb 987dd79ee0e094c3c6d8d2c62442d9046654b3cf 116234 liboce-ocaf-dev_0.16-2_amd64.deb b5f18268474dd0f0ccf2356a52d838f0ea16443b 486074 liboce-visualization-dev_0.16-2_amd64.deb Checksums-Sha256: 17935f8affc1c92e6c235e895c0f703035538e7af9a635b189d8d96cbdbf5df6 2143 oce_0.16-2.dsc 6c42700037c47765a9a6673d2c749c1e6b70992b6734929e9c2168fe28d671b7 24522468 oce_0.16.orig.tar.gz a67a6d1a40ab99b988848fb4fabec996bf844d95d53d40e231576f5fecb1749f 73824 oce_0.16-2.debian.tar.xz 23096055614fbbee2131b4aaa1ff6e57d5ab501c129507186ce05eaa8e0d9ee0 1229122 liboce-foundation9_0.16-2_amd64.deb 16d63061ec3ee863702e81b29a614f8e9eb510de7657b94790013dfdcfff867a 11885108 liboce-modeling9_0.16-2_amd64.deb c839966c660ada834300040d01a64503a9d20df2d3398ac847c4f2f37af02d3e 3095298 liboce-visualization9_0.16-2_amd64.deb 45788ffe27aee394bbe8119ce12b7cb5dd0981dc1a68a193d449af664ba3a0d9 1156722 liboce-ocaf-lite9_0.16-2_amd64.deb 61c0297912ee3fe2f79a11e899bd522760134b3080bfdee04def1fb434a3875e 741298 liboce-ocaf9_0.16-2_amd64.deb a9af7af8537a564f9c1fe7dd4bd14db1f8ed50b10eac4689afe50b41ba4d900c 1974810 oce-draw_0.16-2_amd64.deb aa15224c50448eadefbd29a304e10b5e1871df7705b823b1eeaacbacfe853250 854388 liboce-foundation-dev_0.16-2_amd64.deb a15c9f241ba56eebd9ff52cc70d62a165aaf8ff84f0e6f0297a0415e2dc21679 2149666 liboce-modeling-dev_0.16-2_amd64.deb bb9b830a65a2dcaa7f370d4e31309ebd3ccf5863756e26341d4e87967b1c38d9 332858 liboce-ocaf-lite-dev_0.16-2_amd64.deb 451bcaa7d77c60129a3d1474cd7beab7a28edd2ddc554914a489dc43e0f71082 116234 liboce-ocaf-dev_0.16-2_amd64.deb f30060d30ff4515d6fb0feb73e9606a67097d73a905667a7294655f715871325 486074 liboce-visualization-dev_0.16-2_amd64.deb Files: 64ad692b7b56d99baca852046fd25adf 1229122 libs extra liboce-foundation9_0.16-2_amd64.deb a72375b1d13076af206f67e17850eca0 11885108 libs extra liboce-modeling9_0.16-2_amd64.deb b27e36bd67201077d54a8b24ba56cc58
Processing of syrthes_4.1.1-dfsg1-3_i386.changes
syrthes_4.1.1-dfsg1-3_i386.changes uploaded successfully to localhost along with the files: syrthes_4.1.1-dfsg1-3_i386.deb syrthes-tools_4.1.1-dfsg1-3_i386.deb syrthes-gui_4.1.1-dfsg1-3_all.deb syrthes-tests_4.1.1-dfsg1-3_all.deb syrthes_4.1.1-dfsg1-3.dsc syrthes_4.1.1-dfsg1-3.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
syrthes_4.1.1-dfsg1-3_i386.changes ACCEPTED into experimental
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 30 Jul 2014 20:16:50 +0200 Source: syrthes Binary: syrthes syrthes-tools syrthes-gui syrthes-tests Architecture: source i386 all Version: 4.1.1-dfsg1-3 Distribution: experimental Urgency: medium Maintainer: Debian Science Maintainers debian-science-maintainers@lists.alioth.debian.org Changed-By: Gilles Filippini p...@debian.org Description: syrthes- Transient thermal simulations in complex solid geometries syrthes-gui - Transient thermal simulations in complex solid geometries - GUI syrthes-tests - Test cases for SYRTHES syrthes-tools - Transient thermal simulations in complex solid geometries - tools Changes: syrthes (4.1.1-dfsg1-3) experimental; urgency=medium . * Fix setup.patch to support the hdf5 1.8.13 new packaging layout. Checksums-Sha1: 02ae84993eed5f47e17534efb418abbcb647407e 1899 syrthes_4.1.1-dfsg1-3.dsc e384ce2c15638bb84495614a1a49c2c005ae4550 12104 syrthes_4.1.1-dfsg1-3.debian.tar.xz 3d931a55eb2a48f445fa05338cec56687ad53710 338240 syrthes_4.1.1-dfsg1-3_i386.deb 5b59840e1dd9f229c8044735b69bd073eafc9cc3 151960 syrthes-tools_4.1.1-dfsg1-3_i386.deb ecf72958141d36dd94987cb971ad213830582402 495612 syrthes-gui_4.1.1-dfsg1-3_all.deb f1ab88f26105637f028d991bf9c4d1ba1bd6fb1e 15021684 syrthes-tests_4.1.1-dfsg1-3_all.deb Checksums-Sha256: a4519b2e1c26692638c119b5e5853799bbee6cfc2e7856241ea2bf271622da00 1899 syrthes_4.1.1-dfsg1-3.dsc 76f4731d1c222547676889bee26a523c7ab3b2a07a67f8d7e285aec80e1514cd 12104 syrthes_4.1.1-dfsg1-3.debian.tar.xz 039ff823cea9525434bf79e82841681f6d3652f465f9d38b8db8cdf0f492dd0e 338240 syrthes_4.1.1-dfsg1-3_i386.deb 857f18deead2752c198a776209cb87323db9f059a1a8f6196db77396eb4e0190 151960 syrthes-tools_4.1.1-dfsg1-3_i386.deb d888e51ce537810754dca2f95cc0395b081e227bf6fb1fab2c06af74f7b287c6 495612 syrthes-gui_4.1.1-dfsg1-3_all.deb 6fce172022db656e4a9f82afa2f26f53c12fc3a1e241c169ad64f75b956919a3 15021684 syrthes-tests_4.1.1-dfsg1-3_all.deb Files: c1146536433e87fb73b695afcb30 338240 science extra syrthes_4.1.1-dfsg1-3_i386.deb c85b5bd33ea90225a9fa60eb25e8a8d1 151960 science extra syrthes-tools_4.1.1-dfsg1-3_i386.deb c04ed8844282acf13f5c165abd95c4b9 495612 science extra syrthes-gui_4.1.1-dfsg1-3_all.deb 635196e5e356fcdf8b6f09cec8508156 15021684 science extra syrthes-tests_4.1.1-dfsg1-3_all.deb efedf9381360119677704a75161b2412 1899 science extra syrthes_4.1.1-dfsg1-3.dsc 34c64ac87c5a732fbeb771147585acb6 12104 science extra syrthes_4.1.1-dfsg1-3.debian.tar.xz -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2j92AAoJEO/obGx//s+DDusIALEDfxLKdEUWHVkHh27HfIAG AUyccqgRBIPFLxIo0NZym5PFCVJcgb4hv4vVTq7UH+5haRdI7pflZHAn3a0zLKIi jdK7gAT+vJINHFIgCHIIAta5lnnO66qLKRa9JGpjPlCryrobgzmcLO/Ts0dTz4E9 NLvJYMjbvAGmdNNGcL5RIT6HZDF2DzLiioCNLr2F6scgTDR+ALxHc5/veaVpMZ5l xM2QssQA1VTVmKHJ32UoC3jfk1AB0yiZjGGsfPG3GWuY9sq0Y5dDSCmtSHSDMAHW 2xO3ixYQ6MsYvGz23ca8dVzzWrHn/9AtPs/Zn3HmhZ7FNuWg3WXRHq3VfTf7Q4A= =8xJ3 -END PGP SIGNATURE- Thank you for your contribution to Debian. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Re: Comments from ftpmaster regarding spdep Debian package
On Thu, 31 Jul 2014, Andreas Tille wrote: Hi Roger, I'm very astonished that this thread which started with two very simple questions exagerated to such a time consuming discussion. Most questions are not as simple as they appear, think ontologies. Mine differs from yours. You haven't toød me why you need to package spdep other than that another R package depends on (enhances?) spdep. I guessed stargazer, but you ignored my question. I need to know why this matters. Since I read a lot of frustration in you mail and no chance to clarify things easily I just repeat the main point: inst/README says: A frequently given reply for Debian/Ubuntu users of rgdal (R interface to GDAL) is to avoid any and all pre-packaged Debian/Ubuntu packages and similar dependency traps. The Debian/Ubuntu packaging of central GIS software is so poor and tardy that it is a major problem for users. Consequently I view any such packaging as unnecessary in principle and practice, and that users should install from source on Linux/Unix, especially CRAN packages and R itself, and crucial external dependencies. File: src/soigraph.c is copyright (c) 2001 by Nicholas Lewin-Koh and is subject to the licence at the foot of this file, but also contains subroutines TwoCirclesxx and SubVec, which are adapted for R and Double precision coordinates by Nicholas Lewin-Koh, from Computational Geometry in C, Joseph O.Rourke, Cambridge University Press (1998). Copyright for those subroutines remains his. Can you please confirm that the license is really GPLv2+? [ ] yes [ ] no No idea, IANAL, I assume that the original author Nicholas Lewin-Koh checked in 2001 when the code came into being that the license given was adequate. My interpretation of the text in the file from which the functions were taken is that it permits use and redistribution provided that the copyright to J. O'Rourke is acknowledged, which it is. Best wishes, Roger Sorry for the obviously failed attempt to explain what we would like to know from you. Kind regards Andreas. -- Roger Bivand Department of Economics, Norwegian School of Economics, Helleveien 30, N-5045 Bergen, Norway. voice: +47 55 95 93 55; fax +47 55 95 91 00 e-mail: roger.biv...@nhh.no -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#755227: Building eclib with clang
On 26/07/2014 10:09, Julien Puydt wrote: Hi, sorry it took so long to answer. Could you tell me the full name of the patch author? Alexander Ovchinnikov and whether the patch was already forwarded upstream? Probably not :) S -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Re: Comments from ftpmaster regarding spdep Debian package
Hi Roger, On Thu, Jul 31, 2014 at 03:47:34PM +0200, Roger Bivand wrote: I'm very astonished that this thread which started with two very simple questions exagerated to such a time consuming discussion. Most questions are not as simple as they appear, think ontologies. Mine differs from yours. You haven't toød me why you need to package spdep other than that another R package depends on (enhances?) spdep. http://surveillance.r-forge.r-project.org I guessed stargazer, but you ignored my question. I need to know why this matters. I have no idea why you guessed this since stargazer is not packaged for Debian and I do not know about any intend to package it. I did not wanted to avoid your question but rather wanted to save your time with discussion that seemed irrelevant to me. Since I read a lot of frustration in you mail and no chance to clarify things easily I just repeat the main point: inst/README says: A frequently given reply for Debian/Ubuntu users of rgdal (R interface to GDAL) is to avoid any and all pre-packaged Debian/Ubuntu packages and similar dependency traps. The Debian/Ubuntu packaging of central GIS software is so poor and tardy that it is a major problem for users. Since I can not find rgdal in the Debian package pool I would welcome if this accusation would go to the place where it belongs to. While I agree that Debian GIS software -- not GIS software written in R but in general -- was not in the best state but there is currently an effort to enhance situation. It does not help if people repeat third persons experiences without checking the current status. Consequently I view any such packaging as unnecessary in principle and practice, and that users should install from source on Linux/Unix, especially CRAN packages and R itself, and crucial external dependencies. I'm working in the Debian Med project and the epidemiology task has several R packages: http://blends.debian.org/med/tasks/epi The packages there do not have any open bug reports and are up to date with the exception of r-cran-surveillance which I'm working on currently. It needs to pass the new queue for the sake of waiting for a r-cran-maptools. Since I added auto testing feature for all packages featuring unit tests also spdep is needed since it is used in the unit tests. You seem to be concerned about the quality of packaged software and so I hope you agree that running a test suite automatically and periodically is a good idea. In short: I accept your opinion about Debian packaging but there are users out there who are regarding our effort as helpful and I'm doing this for these people. File: src/soigraph.c is copyright (c) 2001 by Nicholas Lewin-Koh and is subject to the licence at the foot of this file, but also contains subroutines TwoCirclesxx and SubVec, which are adapted for R and Double precision coordinates by Nicholas Lewin-Koh, from Computational Geometry in C, Joseph O.Rourke, Cambridge University Press (1998). Copyright for those subroutines remains his. Can you please confirm that the license is really GPLv2+? [ ] yes [ ] no No idea, IANAL, I assume that the original author Nicholas Lewin-Koh checked in 2001 when the code came into being that the license given was adequate. My interpretation of the text in the file from which the functions were taken is that it permits use and redistribution provided that the copyright to J. O'Rourke is acknowledged, which it is. I'll forward this to our ftpmaster whether he might regard this as sufficient to distribute the package. Kind regards Andreas. -- http://fam-tille.de -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
freefem 3.5.8-5.1 MIGRATED to testing
FYI: The status of the freefem source package in Debian's testing distribution has changed. Previous version: (not in testing) Current version: 3.5.8-5.1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Re: Comments from ftpmaster regarding spdep Debian package
Hi Andreas, Given surveillance rather than my (wrong) guess, I'm willing to do what I can - I agree that actual use in epidemiology is worth facilitating. Should the soigraph issue prove problematic, I'll look at a work-around. What is the r-cran-maptools issue - I'm also the maintainer of that package? I'm not aware of what might be non-free there; maybe the data files for examples and testing? Nobody has asked me about that. Best wishes, Roger On Thu, 31 Jul 2014, Andreas Tille wrote: Hi Roger, On Thu, Jul 31, 2014 at 03:47:34PM +0200, Roger Bivand wrote: I'm very astonished that this thread which started with two very simple questions exagerated to such a time consuming discussion. Most questions are not as simple as they appear, think ontologies. Mine differs from yours. You haven't toød me why you need to package spdep other than that another R package depends on (enhances?) spdep. http://surveillance.r-forge.r-project.org I guessed stargazer, but you ignored my question. I need to know why this matters. I have no idea why you guessed this since stargazer is not packaged for Debian and I do not know about any intend to package it. I did not wanted to avoid your question but rather wanted to save your time with discussion that seemed irrelevant to me. Since I read a lot of frustration in you mail and no chance to clarify things easily I just repeat the main point: inst/README says: A frequently given reply for Debian/Ubuntu users of rgdal (R interface to GDAL) is to avoid any and all pre-packaged Debian/Ubuntu packages and similar dependency traps. The Debian/Ubuntu packaging of central GIS software is so poor and tardy that it is a major problem for users. Since I can not find rgdal in the Debian package pool I would welcome if this accusation would go to the place where it belongs to. While I agree that Debian GIS software -- not GIS software written in R but in general -- was not in the best state but there is currently an effort to enhance situation. It does not help if people repeat third persons experiences without checking the current status. Consequently I view any such packaging as unnecessary in principle and practice, and that users should install from source on Linux/Unix, especially CRAN packages and R itself, and crucial external dependencies. I'm working in the Debian Med project and the epidemiology task has several R packages: http://blends.debian.org/med/tasks/epi The packages there do not have any open bug reports and are up to date with the exception of r-cran-surveillance which I'm working on currently. It needs to pass the new queue for the sake of waiting for a r-cran-maptools. Since I added auto testing feature for all packages featuring unit tests also spdep is needed since it is used in the unit tests. You seem to be concerned about the quality of packaged software and so I hope you agree that running a test suite automatically and periodically is a good idea. In short: I accept your opinion about Debian packaging but there are users out there who are regarding our effort as helpful and I'm doing this for these people. File: src/soigraph.c is copyright (c) 2001 by Nicholas Lewin-Koh and is subject to the licence at the foot of this file, but also contains subroutines TwoCirclesxx and SubVec, which are adapted for R and Double precision coordinates by Nicholas Lewin-Koh, from Computational Geometry in C, Joseph O.Rourke, Cambridge University Press (1998). Copyright for those subroutines remains his. Can you please confirm that the license is really GPLv2+? [ ] yes [ ] no No idea, IANAL, I assume that the original author Nicholas Lewin-Koh checked in 2001 when the code came into being that the license given was adequate. My interpretation of the text in the file from which the functions were taken is that it permits use and redistribution provided that the copyright to J. O'Rourke is acknowledged, which it is. I'll forward this to our ftpmaster whether he might regard this as sufficient to distribute the package. Kind regards Andreas. -- Roger Bivand Department of Economics, Norwegian School of Economics, Helleveien 30, N-5045 Bergen, Norway. voice: +47 55 95 93 55; fax +47 55 95 91 00 e-mail: roger.biv...@nhh.no -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Processing of syrthes_3.4.3-dfsg1-8_i386.changes
syrthes_3.4.3-dfsg1-8_i386.changes uploaded successfully to localhost along with the files: syrthes_3.4.3-dfsg1-8_i386.deb syrthes_3.4.3-dfsg1-8.dsc syrthes_3.4.3-dfsg1-8.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
syrthes_3.4.3-dfsg1-8_i386.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Thu, 31 Jul 2014 19:08:01 +0200 Source: syrthes Binary: syrthes Architecture: source i386 Version: 3.4.3-dfsg1-8 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers debian-science-maintainers@lists.alioth.debian.org Changed-By: Gilles Filippini p...@debian.org Description: syrthes- Transient thermal simulations in complex solid geometries Changes: syrthes (3.4.3-dfsg1-8) unstable; urgency=medium . * Support hdf5 1.8.13 new packaging layout. Checksums-Sha1: d4bbef6d7dfab2a891667fc26c6341b55c8980da 1664 syrthes_3.4.3-dfsg1-8.dsc 4bb29be4f0315002e4cf2682898b77fd47ff251e 7348 syrthes_3.4.3-dfsg1-8.debian.tar.xz 5c7e984dae3eb2984c76a4090001f479e5ab43de 504892 syrthes_3.4.3-dfsg1-8_i386.deb Checksums-Sha256: 3c544af2d3a3c67314130ecfba55c8b7471009e90d54360f5227abf89a3d60f3 1664 syrthes_3.4.3-dfsg1-8.dsc 70a370700c100858e447095309faf1bd84d49f873e5f9f00427948900f3e80f3 7348 syrthes_3.4.3-dfsg1-8.debian.tar.xz 556034aa31b5badcbc2b405aeae620d4cd7b49fc800490cfe3e17a8d95072f71 504892 syrthes_3.4.3-dfsg1-8_i386.deb Files: c767969b9c2dae0bba3e887b7a765ff4 504892 science extra syrthes_3.4.3-dfsg1-8_i386.deb 136b27cc7cc66213e6a8b4782ecd9a8b 1664 science extra syrthes_3.4.3-dfsg1-8.dsc f1ca80d803b33bc41af1510c8043d653 7348 science extra syrthes_3.4.3-dfsg1-8.debian.tar.xz -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2n/pAAoJEO/obGx//s+DV0kH/iBOXVM6BTdqxqvaTUeD7z+y heRqXgLnZ7b9hHiO0GiSt+3BTYH3frbOc/MVv0Rli3u+F9gC/a6rdekAv27mfPrH wyhFPWK2r64cnTA+NBnFH0SS6d03/2L1IBaUAvh9tEXP+7THGfTjxMP/ZIROxNWg C0FtlwvTeTcrKgCo0poncHu0ui1HoKvoC74yJeDy+AKgdCIYBC5Vgohp162wPsTm +wJSztsRhVoP/xWw/lCXNBLdSv2mBGOXdIMzR/LPKngkxfjtSr9A5HU2ca4E0Tmh PlI7sZP5xSevVi9vzg9JmotjoBroYbiuCQNy1Fnm31lUWgIVQB3EA86Kwh50zdo= =a22K -END PGP SIGNATURE- Thank you for your contribution to Debian. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Re: Comments from ftpmaster regarding spdep Debian package
Hi Roger, On Thu, Jul 31, 2014 at 06:42:06PM +0200, Roger Bivand wrote: Hi Andreas, Given surveillance rather than my (wrong) guess, I'm willing to do what I can - I agree that actual use in epidemiology is worth facilitating. Should the soigraph issue prove problematic, I'll look at a work-around. I'll wait for ftpmaster's response and let you know: What is the r-cran-maptools issue - I'm also the maintainer of that package? I'm not aware of what might be non-free there; maybe the data files for examples and testing? Nobody has asked me about that. To explain this I need to come back to the debian/copyright file. Here is the debian/copyright file http://anonscm.debian.org/viewvc/debian-science/packages/R/r-cran-maptools/trunk/debian/copyright?view=diffr1=45900r2=46749diff_format=h The files on the right side under the tag Files-Excluded do not have any licensing information. I have asked years ago (Spring 2009) but did not got any answer. For me (and the users of surveillance the removal of these files is perfectly OK. So in principle I see no stromg reason to keep the files if it creates a lot of work for you. Kind regards Andreas. -- http://fam-tille.de -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#755227: Building eclib with clang
Hi, Le 31/07/2014 16:21, Sylvestre Ledru a écrit : On 26/07/2014 10:09, Julien Puydt wrote: Hi, sorry it took so long to answer. Could you tell me the full name of the patch author? Alexander Ovchinnikov and whether the patch was already forwarded upstream? Probably not :) S I'm a bit annoyed because now that I have reread the patch before pushing it upstream : - there is the part about the friend declarations and default values at the beginning, which I understand is the main topic of the patch ; - but then there are places where *calls* to the above functions are modified, to add an argument... and this puzzles me : aren't default values precisely there to avoid giving default values for those arguments? Here is an example: -#define RESTRICT(a,b) prestrict(a,b,MODULUS) +#define RESTRICT(a,b) prestrict(a,b,MODULUS, 0) So I'm wondering if the patch is really correct, because those changes don't look legit. Snark on #debian-science -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#755227: Building eclib with clang
Hi, Please see above, Take a look to the message with subject Update patch. I have tried to make new patch in the correct way. -- Alexander Best regards. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756659: aster: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: aster Version: 11.5.0+dfsg2-2 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2rYHAAoJEO/obGx//s+DK8YH/j7zh1jAoiPoRqI4dGQpmnVW Z+KColuVlayE5nlOWuea8TMKhnap0luSy2H9dYZkKRwjIjWGOy6AlsdQIJqGQVqI oDNcFVSgp7SXAoFHu2mbtg1B27OhRwpknC7qx8rxdKWWuvPtqCeOz3aRgQuV2ckK Zf3V9Fl4trkhVpLhU7KkrZkRVlczl276V90aeVe2F8ufGKebTFMKQkdkHvaNx+oN Vi6HxIjx6xmRuafampEsdLQhy308x13WelOjp2lB+45E1lASWt++E1nRy9jpHhRw FATC9wwWdLCWCGQ1kMe6Wzwqp0apf0XaJDEi5iNkWSpiXyaSIRIxCE3ueWbteKM= =DU8F -END PGP SIGNATURE- diff -Nru aster-11.5.0+dfsg2/debian/changelog aster-11.5.0+dfsg2/debian/changelog --- aster-11.5.0+dfsg2/debian/changelog 2014-06-16 14:04:11.0 +0200 +++ aster-11.5.0+dfsg2/debian/changelog 2014-07-24 14:46:25.0 +0200 @@ -1,3 +1,10 @@ +aster (11.5.0+dfsg2-2.1) UNRELEASED; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + + -- Gilles Filippini p...@debian.org Thu, 24 Jul 2014 14:46:06 +0200 + aster (11.5.0+dfsg2-2) unstable; urgency=low * Team upload. diff -Nru aster-11.5.0+dfsg2/debian/compat aster-11.5.0+dfsg2/debian/compat --- aster-11.5.0+dfsg2/debian/compat 2014-03-26 11:55:03.0 +0100 +++ aster-11.5.0+dfsg2/debian/compat 2014-07-24 15:54:25.0 +0200 @@ -1 +1 @@ -8 +9 diff -Nru aster-11.5.0+dfsg2/debian/rules aster-11.5.0+dfsg2/debian/rules --- aster-11.5.0+dfsg2/debian/rules 2014-06-13 09:57:12.0 +0200 +++ aster-11.5.0+dfsg2/debian/rules 2014-07-31 08:56:51.0 +0200 @@ -4,6 +4,16 @@ # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 + +# Which MPI implementation? +# set ARCH_DEFAULT_MPI_IMPL +include /usr/share/mpi-default-dev/debian_defaults + +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL)/libhdf5.so),) + export DEB_CPPFLAGS_MAINT_APPEND := -I/usr/include/hdf5/$(ARCH_DEFAULT_MPI_IMPL) + export DEB_LDFLAGS_MAINT_APPEND := -Wl,-L/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL) +endif + %: dh $@ --with=python2 @@ -18,7 +28,8 @@ ./waf configure --install-tests --prefix=/usr \ --disable-metis \ --build-executable \ - --enable-mpi + --enable-mpi \ + --enable-hdf5 override_dh_auto_build: ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756661: code-saturne: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: code-saturne Version: 3.3.1-1 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2rdNAAoJEO/obGx//s+DV/YH/iShS7y9Z1UAKBCqCPTt8qg8 SYetfMm/xOcPmRZDNqHSLdCrRRnm/ZPq3fe/+ktYSLM2Ke9/STE28aLnvHDLgg0A FZudMist2GxOyr//xvJtFoCW2yG4/AtfgxXBvS/nncdchOnDLSSXY/qX+r5mvPfr Q+lKeTxADL34hWQ2arG5bUZpG6BtbLiFrzr9r2r34qhZm7XAzREOAf+60Irke2ZL Lk1fA6dJW1bUwIWZPKBM08HoGCM7+N5a9Cxkoors2yLzEwsfAgHZIolVebpD85aK kUE9tz0XfraSaag4l4aOOjXweCdn/dc8k26Dj2vfGDx4cWJrkyxZqP8Ay4BweZA= =zYSL -END PGP SIGNATURE- diff -Nru code-saturne-3.3.1/debian/changelog code-saturne-3.3.1/debian/changelog --- code-saturne-3.3.1/debian/changelog 2014-07-14 15:27:45.0 +0200 +++ code-saturne-3.3.1/debian/changelog 2014-07-24 16:15:19.0 +0200 @@ -1,3 +1,10 @@ +code-saturne (3.3.1-1.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + + -- Gilles Filippini p...@debian.org Thu, 24 Jul 2014 16:15:19 +0200 + code-saturne (3.3.1-1) unstable; urgency=medium * New upstream release diff -Nru code-saturne-3.3.1/debian/rules code-saturne-3.3.1/debian/rules --- code-saturne-3.3.1/debian/rules 2014-07-14 15:26:32.0 +0200 +++ code-saturne-3.3.1/debian/rules 2014-07-31 09:22:36.0 +0200 @@ -5,7 +5,18 @@ include /usr/share/cdbs/1/class/autotools.mk include /usr/share/cdbs/1/rules/autoreconf.mk +# Which MPI implementation? +# set ARCH_DEFAULT_MPI_IMPL +include /usr/share/mpi-default-dev/debian_defaults + DEB_CONFIGURE_USER_FLAGS := --with-syrthes=/usr/lib/syrthes/ --with-mpi --libexecdir=/usr/lib/ + +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL)/libhdf5.so),) + DEB_CONFIGURE_USER_FLAGS += \ + --with-hdf5-include=/usr/include/hdf5/$(ARCH_DEFAULT_MPI_IMPL) \ + --with-hdf5-lib=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL) +endif + #--libdir=/usr/lib/code_saturne DEB_MAKE_BUILD_TARGET:= all DEB_MAKE_INSTALL_TARGET := install DESTDIR=`pwd`/debian/tmp -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756672: jhdf: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: jhdf Version: 2.9-1 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2sIIAAoJEO/obGx//s+DuhkH/iG3oP95A5FxHoyNuceh0vZ2 XOp3uydh5duD5qMYk6BEiSLiVvhUr1JTJENjSoL85noUrdBq60KEdPnNTANajeT8 33Vw2Rq6REylexrkMTocZrYFNrsILgrfK50kW1PDjwbIORHsjCckwocDPmfqI8SZ ZNWs2EtnfQ7IwjS/MUbAdPBY/VJuOR4hRo31X8wRnkejxg2bxJe8+2hmbnhY5smA KR0H8t1t/OiJI3g7Or1Xq1UNF0zGqeKIweIRdL7V0i/37X6h9sFLbtdMWBsJrpb2 SaNtIVoUZ+RMnmk/WgvN08fjwEyVX7UfVe2u0TMeZrJNmpd1MaS/7M9F+1+1TU8= =pRMY -END PGP SIGNATURE- diff -Nru jhdf-2.9/debian/changelog jhdf-2.9/debian/changelog --- jhdf-2.9/debian/changelog 2013-08-06 12:26:34.0 +0200 +++ jhdf-2.9/debian/changelog 2014-07-25 09:57:03.0 +0200 @@ -1,3 +1,11 @@ +jhdf (2.9-1.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + * Fix patch useSharedLib.diff to set correct HDF5 path via configure. + + -- Gilles Filippini p...@debian.org Fri, 25 Jul 2014 09:47:38 +0200 + jhdf (2.9-1) unstable; urgency=low * Upload to unstable diff -Nru jhdf-2.9/debian/patches/useSharedLib.diff jhdf-2.9/debian/patches/useSharedLib.diff --- jhdf-2.9/debian/patches/useSharedLib.diff 2013-08-06 12:24:54.0 +0200 +++ jhdf-2.9/debian/patches/useSharedLib.diff 2014-07-25 10:22:22.0 +0200 @@ -1,7 +1,7 @@ -Index: jhdf-2.7.obsolete.0.647783268782408/native/hdf5lib/Makefile.in +Index: jhdf-2.9/native/hdf5lib/Makefile.in === jhdf-2.7.obsolete.0.647783268782408.orig/native/hdf5lib/Makefile.in 2011-03-03 15:35:23.0 +0100 -+++ jhdf-2.7.obsolete.0.647783268782408/native/hdf5lib/Makefile.in 2011-03-03 15:36:01.0 +0100 +--- jhdf-2.9.orig/native/hdf5lib/Makefile.in 2012-11-13 00:11:49.0 +0100 jhdf-2.9/native/hdf5lib/Makefile.in 2014-07-25 10:21:47.57065 +0200 @@ -35,7 +35,8 @@ CFLAGS = -D_FILE_OFFSET_BITS=64 $(DEFS) -I. -I$(HDF5INC) -I$(JAVAINC1) -I$(JAVAINC2) @@ -12,10 +12,10 @@ # Macro def: object filename used OBJECTS = exceptionImp.o h5Constants.o h5Imp.o h5aImp.o h5dImp.o h5eImp.o h5fImp.o h5gImp.o h5iImp.o h5lImp.o h5oImp.o h5pImp.o h5rImp.o h5sImp.o h5tImp.o nativeData.o h5util.o h5zImp.o -Index: jhdf-2.7.obsolete.0.647783268782408/native/hdflib/Makefile.in +Index: jhdf-2.9/native/hdflib/Makefile.in === jhdf-2.7.obsolete.0.647783268782408.orig/native/hdflib/Makefile.in 2011-03-03 15:35:23.0 +0100 -+++ jhdf-2.7.obsolete.0.647783268782408/native/hdflib/Makefile.in 2011-03-03 15:35:49.0 +0100 +--- jhdf-2.9.orig/native/hdflib/Makefile.in 2012-11-13 00:11:48.0 +0100 jhdf-2.9/native/hdflib/Makefile.in 2014-07-25 10:21:47.538648940 +0200 @@ -41,7 +41,8 @@ CFLAGS = $(DEFS) -I. -I$(JAVAINC1) -I$(JAVAINC2) -I$(HDFINC) @@ -26,8 +26,10 @@ # Macro def: object filename used OBJECTS = hdfstructsutil.o \ jhdf-2.8.orig/configure.in 2011-11-29 21:19:58.0 +0100 -+++ jhdf-2.8-beta/configure.in 2011-12-01 01:29:38.584217066 +0100 +Index: jhdf-2.9/configure.in +=== +--- jhdf-2.9.orig/configure.in 2014-07-25 09:45:11.0 +0200 jhdf-2.9/configure.in 2014-07-25 10:22:19.839719235 +0200 @@ -165,26 +165,7 @@ AC_SUBST(ZLIB) ZLIB= AC_ARG_WITH(libz,[ --with-libz=LIB Path to the gzip library (required if not in default path)],,) @@ -121,47 +123,12 @@ if test -n $HDF4LIB; then LIBS=$HDF4LIB/libdf.$LLEXT $HDF4LIB/libmfhdf.$LLEXT $LIBS HAVE_HDF4=yes -@@ -351,38 +291,11 @@ - AC_SUBST(HDF5LIB) HDF5LIB= - AC_ARG_WITH(hdf5,[ --with-hdf5=LIB Path to the hdf5 library (required if not in default path)],,) - --case $withval in -- yes) -- HDF5LIB= -- HAVE_HDF5=no --;; -- no) -- HDF5LIB= -- HAVE_HDF5=suppressed --;; -- *) -- if test -n $withval ; then -- hdf5_lib=`echo $withval |cut -f2 -d, -s` --HDF5LIB=$hdf5_lib/libhdf.$LLEXT -- hdf5_inc=`echo $withval |cut -f1 -d,` -- if test -n $hdf5_inc; then --HDF5INC=$hdf5_inc -- fi --
Bug#756673: libcgns: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: libcgns Version: 3.1.4.2-1 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2sJlAAoJEO/obGx//s+DsmIIAIdq/EcpiLvuMTxRi52fHNVQ JyJcgqGgF2hYsd73AOkZdQcXKriV5ak2tlj30qd2SVEdu2PzL7RpREfXUwLII6L0 N9I4L50TbPwl9Z3HzvAH6xuqDaSi78Jsg/pN9Adtmyh7YH0CbhTOVIALLgyymERQ P19BCOOd7v1TXVg3tv4JtNTm0MKuW9VPGC2S5zBzR4vhlkMQ0BZ2PyvQ4INMNbKF 4tp4vwsKCgzykV+NbArd6phbz3Q7LeQDSwFsFlep1krDIz7mUbjOOVimSsCovuX2 AYcT1lsMzZ64nl/XB49pSZtalERLYLAQMCo7YZlprwIiJNZjHANzp4hllu/Eq+A= =2JM/ -END PGP SIGNATURE- diff -Nru libcgns-3.1.4.2/debian/changelog libcgns-3.1.4.2/debian/changelog --- libcgns-3.1.4.2/debian/changelog 2013-08-06 14:52:59.0 +0200 +++ libcgns-3.1.4.2/debian/changelog 2014-07-25 10:45:50.0 +0200 @@ -1,3 +1,10 @@ +libcgns (3.1.4.2-1.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + + -- Gilles Filippini p...@debian.org Fri, 25 Jul 2014 10:45:50 +0200 + libcgns (3.1.4.2-1) unstable; urgency=low * New upstream release diff -Nru libcgns-3.1.4.2/debian/rules libcgns-3.1.4.2/debian/rules --- libcgns-3.1.4.2/debian/rules 2013-08-06 14:43:24.0 +0200 +++ libcgns-3.1.4.2/debian/rules 2014-07-31 10:10:33.0 +0200 @@ -10,6 +10,10 @@ DEB_CMAKE_EXTRA_FLAGS += -DENABLE_64BIT=OFF -DENABLE_HDF5=ON \ -DENABLE_LEGACY=ON -DENABLE_SCOPING=ON -DENABLE_FORTRAN=ON +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),) + export CMAKE_INCLUDE_PATH=/usr/include/hdf5/serial + export CMAKE_LIBRARY_PATH=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial +endif DEB_CONFIGURE_NORMAL_ARGS += --enable-shared=all --with-hdf5=/usr \ --with-szip --enable-lfs --enable-debug -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756675: libmatio: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: libmatio
Version: 1.5.2-2
Severity: important
Tags: patch
User: p...@debian.org
Usertags: HDF5-transition
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Hi,
The hdf5 1.8.13 package in experimental features a new layout for
headers and libraries, so that all the binary packages are now
co-installable.
Please find attached a patch proposal to support both the current
and the new layouts.
Because this bug is in the way of the hdf5 transition I intend to NMU
in a few days. I apologize for the urge, and I hope this approach won't
offend you. Please tell me otherwise.
Kind regards,
_g.
- -- System Information:
Debian Release: jessie/sid
APT prefers testing
APT policy: (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Kernel: Linux 3.14-1-486
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
-BEGIN PGP SIGNATURE-
Version: GnuPG v1
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diff -Nru libmatio-1.5.2/debian/changelog libmatio-1.5.2/debian/changelog
--- libmatio-1.5.2/debian/changelog 2014-07-15 18:06:42.0 +0200
+++ libmatio-1.5.2/debian/changelog 2014-07-25 11:36:19.0 +0200
@@ -1,3 +1,10 @@
+libmatio (1.5.2-2.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Support hdf5 1.8.13 new packaging layout.
+
+ -- Gilles Filippini p...@debian.org Fri, 25 Jul 2014 11:36:19 +0200
+
libmatio (1.5.2-2) unstable; urgency=medium
* Use plain dh-autoreconf. (Closes: #753521)
diff -Nru libmatio-1.5.2/debian/rules libmatio-1.5.2/debian/rules
--- libmatio-1.5.2/debian/rules 2014-07-15 18:00:43.0 +0200
+++ libmatio-1.5.2/debian/rules 2014-07-31 10:18:55.0 +0200
@@ -4,8 +4,14 @@
include /usr/share/cdbs/1/class/autotools.mk
include /usr/share/cdbs/1/rules/autoreconf.mk
-DEB_CONFIGURE_NORMAL_ARGS += --enable-shared --with-hdf5 --enable-fortran --libdir=\$${prefix}/lib/$(DEB_HOST_MULTIARCH)
-DEB_MAKE_BUILD_TARGET := libmatio_la_LIBADD=-lz -lhdf5
+ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),)
+ WITH_HDF5:=--with-hdf5=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial
+else
+ WITH_HDF5:=--with-hdf5
+endif
+
+DEB_CONFIGURE_NORMAL_ARGS += --enable-shared $(WITH_HDF5) --enable-fortran --libdir=\$${prefix}/lib/$(DEB_HOST_MULTIARCH)
+DEB_MAKE_BUILD_TARGET := libmatio_la_LIBADD=\$$(ZLIB_LIBS) \$$(HDF5_LIBS)
DEB_COMPRESS_EXCLUDE := .pdf
install/libmatio-doc::
--
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Bug#756678: med-fichier: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: med-fichier Version: 3.0.6-5 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2sRvAAoJEO/obGx//s+DHP0H/2vq1Dz6xjG/3ulL9xxIpgIX +ekyJ5b9mvBeLl0NIZfaPdTo5D9EzXQ0bQadSTuhjU0Y+tfCCvmbIPXpdiBSvYiW 8LMi/20MgJH9EjSmgm59TU34psORbY1h04tKIXPmbC94MUolRuA1Ii8wWRWBsRCj xagiA0yPJlEWBAu9S0OClLfNNzTVKy5UVaZSxQlQxY3B5tnM2Cyk9vVt0sGdQz8E WhibR/XBs0hEFE+6yfU6mubp5yksEWj3BTyN9ZRWjhsz4KpZEIyefxxyUpWexact sevKPFtBLR2qVqj38r6X6tDaTgUPN1rozw0zSas5scWaMoLogjpnNB3BaiodTp4= =v5qk -END PGP SIGNATURE- diff -Nru med-fichier-3.0.6/debian/changelog med-fichier-3.0.6/debian/changelog --- med-fichier-3.0.6/debian/changelog 2014-05-04 10:38:13.0 +0200 +++ med-fichier-3.0.6/debian/changelog 2014-07-25 13:15:05.0 +0200 @@ -1,3 +1,10 @@ +med-fichier (3.0.6-5.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + + -- Gilles Filippini p...@debian.org Fri, 25 Jul 2014 13:15:05 +0200 + med-fichier (3.0.6-5) unstable; urgency=medium * [e70adff] Fix autotests. diff -Nru med-fichier-3.0.6/debian/rules med-fichier-3.0.6/debian/rules --- med-fichier-3.0.6/debian/rules 2014-04-24 23:49:28.0 +0200 +++ med-fichier-3.0.6/debian/rules 2014-07-31 10:28:57.0 +0200 @@ -2,8 +2,18 @@ %: dh $@ --parallel --with autoreconf +# Which MPI implementation? +# set ARCH_DEFAULT_MPI_IMPL +include /usr/share/mpi-default-dev/debian_defaults + +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL)/libhdf5.so),) + HDF5_CPPFLAGS := -I/usr/include/hdf5/$(ARCH_DEFAULT_MPI_IMPL) -DOMPI_SKIP_MPICXX=1 -DMPICH_SKIP_MPICXX=1 + HDF5_LDFLAGS := -Wl,-L/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL) +endif + export OMPI_MCA_orte_rsh_agent=/bin/false#workaround to start MPI-applications in chroot -export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed +export DEB_CPPFLAGS_MAINT_APPEND := -I/usr/include/$(ARCH_DEFAULT_MPI_IMPL) $(HDF5_CPPFLAGS) +export DEB_LDFLAGS_MAINT_APPEND := -Wl,--as-needed $(HDF5_LDFLAGS) override_dh_auto_install: dh_auto_install -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Processing of gerris_20131206+dfsg-1_amd64.changes
gerris_20131206+dfsg-1_amd64.changes uploaded successfully to localhost along with the files: gerris_20131206+dfsg-1_amd64.deb gerris-mpi_20131206+dfsg-1_amd64.deb libgfs-1.3-2_20131206+dfsg-1_amd64.deb libgfs-dbg_20131206+dfsg-1_amd64.deb libgfs-dev_20131206+dfsg-1_amd64.deb libgfs-mpi-1.3-2_20131206+dfsg-1_amd64.deb libgfs-mpi-dev_20131206+dfsg-1_amd64.deb gerris_20131206+dfsg-1.dsc gerris_20131206+dfsg.orig.tar.gz gerris_20131206+dfsg-1.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756697: salome-kernel: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: salome-kernel Version: 6.5.0-8 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2sgkAAoJEO/obGx//s+DikAH/igfKevNF8tS9SGPEhc+O23g VCBgYQI+lEQl5thCQVGZuqRUoCsSyAONV6bv6okE9Fw93Ne+Ymrcc0UlKzRN7lXa DclNbQZxV/fCVxU+9QSrs/Vq0IVui6GbaiAreXzs3/lX4optQ/hNxtST1hJ5H4Vn f3pbEl7mh01SaJoF9VdbvWi9tCuDiDFJNlxBQmQWFwTUCpORgIRRamfXvLt930rC w0MqxXWO0mIKwSF2uNSQNEYaaReSiGzY4ksJ9gwdtbZ5Qd6Dnr5JUQ8rCaSVW+DC IotZVHp5d5Xonaq7u4zrPc9QoItSVOrvdl/UxAs4vzenjhF/25ZV6S+dN7Z/syA= =Vw5A -END PGP SIGNATURE- diff -u salome-kernel-6.5.0/debian/changelog salome-kernel-6.5.0/debian/changelog --- salome-kernel-6.5.0/debian/changelog +++ salome-kernel-6.5.0/debian/changelog @@ -1,3 +1,10 @@ +salome-kernel (6.5.0-8.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + + -- Gilles Filippini p...@debian.org Sat, 26 Jul 2014 17:11:18 +0200 + salome-kernel (6.5.0-8) unstable; urgency=low * Fix FTBFS with new boost yet again (closes: #735807). diff -u salome-kernel-6.5.0/debian/rules salome-kernel-6.5.0/debian/rules --- salome-kernel-6.5.0/debian/rules +++ salome-kernel-6.5.0/debian/rules @@ -15,6 +15,18 @@ include /usr/share/quilt/quilt.make +ifneq ($(wildcard /usr/share/mpi-default-dev/debian_defaults),) + # Which MPI implementation? + # set ARCH_DEFAULT_MPI_IMPL + include /usr/share/mpi-default-dev/debian_defaults + HDF5_FLAVOR := $(ARCH_DEFAULT_MPI_IMPL) +else + HDF5_FLAVOR := serial +endif +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(HDF5_FLAVOR)/libhdf5.so),) + WITH_HDF5 := --with-hdf5=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(HDF5_FLAVOR) +endif + clean: unpatch dh_testdir -rm -rf $(builddir) $(builddir)-doc @@ -61,6 +73,7 @@ --disable-dependency-tracking \ --disable-maintainer-mode \ --with-mpi=/usr --with-mpi_include=/usr/include/mpi \ + $(WITH_HDF5) \ --bindir=/usr/lib/salome/bin --libdir=/usr/lib/salome/lib \ --docdir=/usr/share/doc/salome-kernel-doc \ CASROOT=/usr \ -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756698: scilab: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: scilab Version: 5.5.0-2 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2shUAAoJEO/obGx//s+DvRQH/iwQGSKXmlY8OVwI9PAs18dV qay34L+44W4J1LbB7FdQFk0SeXi3x41VjIx09O7hxswyw8Oa0/Cfu9TAZguJnRaN 2JKCHzvF05KWGQH5jgfvQOd/cxwpwIVnwygpHANs/NLqkPFshWLvCpp3EmcO/o5H YniAuVjZ23yIwNQ0FCkD/gKhJPYgVYsY0MP2iBuFoimY909cDYEWVdpTPJf6jS5B qJCOw1F3OT6V71f5NYet2WznAkl5ViGJ5h+dxLY5bvlSZEAmN7PotIpwA5Qodpiu KIBvExyd72zK88RNV/oN//Tz8bceytcr8i56XZvDW6jOVLP/MfE1GmXyotYPafw= =7SsP -END PGP SIGNATURE- diff -Nru scilab-5.5.0/debian/changelog scilab-5.5.0/debian/changelog --- scilab-5.5.0/debian/changelog 2014-04-16 17:26:42.0 +0200 +++ scilab-5.5.0/debian/changelog 2014-07-31 18:36:03.0 +0200 @@ -1,3 +1,12 @@ +scilab (5.5.0-2.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + * New patch m4-hdf5.patch: fix typo and unneeded dependency on +inexistant libsz. + + -- Gilles Filippini p...@debian.org Sat, 26 Jul 2014 18:38:24 +0200 + scilab (5.5.0-2) unstable; urgency=medium * Bring back the signal processing library (Don't know why it was missing) diff -Nru scilab-5.5.0/debian/patches/m4-hdf5.patch scilab-5.5.0/debian/patches/m4-hdf5.patch --- scilab-5.5.0/debian/patches/m4-hdf5.patch 1970-01-01 01:00:00.0 +0100 +++ scilab-5.5.0/debian/patches/m4-hdf5.patch 2014-07-31 18:36:03.0 +0200 @@ -0,0 +1,30 @@ +Description: There is no libsz availlable. + The macro was succesfull with libhdf5 installed in system path because + of the missing comma in the second block. With this comma in place the + test fails in every case because of libsz beeing unavaillable. Then + removing -lsz. +Author: Gilles Filippini p...@debian.org +Index: scilab-5.5.0/m4/hdf5.m4 +=== +--- scilab-5.5.0.orig/m4/hdf5.m4 2014-04-11 11:51:34.0 +0200 scilab-5.5.0/m4/hdf5.m4 2014-07-27 13:24:54.247645063 +0200 +@@ -53,7 +53,7 @@ + AC_CHECK_LIB([hdf5], [H5Fopen], + [], + [AC_MSG_ERROR([libhdf5 or libhdf5_hl: library missing. (Cannot find symbol H5Fopen) in $with_hdf5_library. Check if libhdf5 is installed and if the version is correct])], +-[-lsz -lz] ++[-lz] + ) + + else +@@ -61,8 +61,8 @@ + LIBS=$LIBS $HDF5_LIBS + AC_CHECK_LIB([hdf5], [H5Fopen], + [], +-[AC_MSG_ERROR([libhdf5 or libhdf5_hl: library missing. (Cannot find symbol H5Fopen). Check if libhdf5 is installed and if the version is correct])] +-[-lsz -lz] ++[AC_MSG_ERROR([libhdf5 or libhdf5_hl: library missing. (Cannot find symbol H5Fopen). Check if libhdf5 is installed and if the version is correct])], ++[-lz] + ) + fi + diff -Nru scilab-5.5.0/debian/patches/series scilab-5.5.0/debian/patches/series --- scilab-5.5.0/debian/patches/series 2014-04-11 16:51:15.0 +0200 +++ scilab-5.5.0/debian/patches/series 2014-07-31 18:36:03.0 +0200 @@ -5,3 +5,4 @@ jh.diff depend-scicos.diff missing-lib.diff +m4-hdf5.patch diff -Nru scilab-5.5.0/debian/rules scilab-5.5.0/debian/rules --- scilab-5.5.0/debian/rules 2014-04-16 17:28:05.0 +0200 +++ scilab-5.5.0/debian/rules 2014-07-31 18:37:50.0 +0200 @@ -21,6 +21,10 @@ --enable-mpi --disable-static-system-lib # --enable-compilation-tests +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),) + DEB_CONFIGURE_NORMAL_ARGS += --with-hdf5-include=/usr/include/hdf5/serial \ + --with-hdf5-library=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial +endif # requires ocamlopt ifneq (,$(filter $(DEB_HOST_ARCH),arm64 ppc64el mips mipsel s390x sparc)) -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756702: xmds2: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: xmds2 Version: 2.2.0+dfsg1-2 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2sk7AAoJEO/obGx//s+Do2UH/1CdVUd2SVp5wxwzLsxa1P9O LeeNMaO9jjK5Qjn6BYHU2zKm4iYKPbBGw9LatPs752YtMQ/+M9FmZOSrUeL+SZgB zQfHSvughvotFJvhU3o9VTAt7qKvadYPAmV9fga19zTXp3PUvnNvDmpWHEy788vU fmHLu0zIIFstu0AEYLWkWuAm7y4B7pxCXyQ4kotsmovjaWmk9EhiMAGd57ubUgpI UXfqmnNoQuE0+ISM1iKtthudwKC+EfRylt5fQcC2BPqv3VKz6HZdbSYNtaRzvQXM qelgIW1enCPNpia6cA5C+xhnBQwyF3bRdzTsH1FkyP1M5qIk3AFoFJP4S1E32ck= =rvKb -END PGP SIGNATURE- diff -Nru xmds2-2.2.0+dfsg1/debian/changelog xmds2-2.2.0+dfsg1/debian/changelog --- xmds2-2.2.0+dfsg1/debian/changelog 2014-04-09 20:04:41.0 +0200 +++ xmds2-2.2.0+dfsg1/debian/changelog 2014-07-26 20:14:09.0 +0200 @@ -1,3 +1,10 @@ +xmds2 (2.2.0+dfsg1-2.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + + -- Gilles Filippini p...@debian.org Sat, 26 Jul 2014 20:14:09 +0200 + xmds2 (2.2.0+dfsg1-2) unstable; urgency=medium * Team upload. diff -Nru xmds2-2.2.0+dfsg1/debian/rules xmds2-2.2.0+dfsg1/debian/rules --- xmds2-2.2.0+dfsg1/debian/rules 2014-04-09 20:04:01.0 +0200 +++ xmds2-2.2.0+dfsg1/debian/rules 2014-07-31 18:57:05.0 +0200 @@ -3,6 +3,11 @@ XMDS_USER_DATA = $(CURDIR)/debian/xmds-user-data +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),) + HDF5_PATHS := --include-path=/usr/include/hdf5/serial \ + --lib-path=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial +endif + #DH_VERBOSE=1 %: @@ -19,7 +24,7 @@ export OMPI_MCA_plm_rsh_agent=/bin/false ; \ mkdir bin-test ;\ install -m 755 bin/* bin-test ; \ - xmds2 --reconfigure ;\ + xmds2 --reconfigure $(HDF5_PATHS) ; \ ./run_tests.py ;\ cd ./examples ;\ xmds2 lorenz.xmds ;\ -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756703: yorick-hdf5: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: yorick-hdf5 Version: 0.8.0-4 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2slkAAoJEO/obGx//s+DGSoH/3rSY1vY8fyiozzFTiLTgVPk wBVh9TxsvuQDvh8DydX7vpleIgE9WNv+6x61ztAToel8Rt3yTdZuyFfX3oNg2EVZ JDEzxxFxSZPIXbrxL34egv7Ny96vyLD8gq4rVokZLtg9WmjIl9xJfawfnHxIFw8m W4dZDmrid3faq2PuwjfY8MGGkKuT5Fa/rZsv+hiY2vxk84W3dbA3uYpsql2TUT+A /Jt1VxaFNCTTR+uf+f1vIRdKWMNqCoXMKI/lQ7QerpYeztIr8SfVfYmvlGI9BNRd aPsgvuLtD7aun7RW0NomZd5WhQEmrL8NhlHr8myW+hHrd1/JHlU9ghYHB9nyRzA= =YO/c -END PGP SIGNATURE- diff -Nru yorick-hdf5-0.8.0/debian/changelog yorick-hdf5-0.8.0/debian/changelog --- yorick-hdf5-0.8.0/debian/changelog 2012-06-28 17:39:22.0 +0200 +++ yorick-hdf5-0.8.0/debian/changelog 2014-07-26 20:18:32.0 +0200 @@ -1,3 +1,10 @@ +yorick-hdf5 (0.8.0-4.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + + -- Gilles Filippini p...@debian.org Sat, 26 Jul 2014 20:18:32 +0200 + yorick-hdf5 (0.8.0-4) unstable; urgency=low * Fortify (don't rely on yorick to provide right flags) diff -Nru yorick-hdf5-0.8.0/debian/rules yorick-hdf5-0.8.0/debian/rules --- yorick-hdf5-0.8.0/debian/rules 2012-06-28 17:38:01.0 +0200 +++ yorick-hdf5-0.8.0/debian/rules 2014-07-31 19:13:26.0 +0200 @@ -1,5 +1,10 @@ #!/usr/bin/make -f +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),) + export DEB_CPPFLAGS_MAINT_APPEND := -I/usr/include/hdf5/serial + export DEB_LDFLAGS_MAINT_APPEND := -Wl,-L/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial +endif + %: dh $@ @@ -12,4 +17,4 @@ dh_installyorick override_dh_auto_clean: - $(MAKE) Y_MAKEDIR=/usr/lib/yorick Y_EXE=/usr/bin/yorick clean + -$(MAKE) Y_MAKEDIR=/usr/lib/yorick Y_EXE=/usr/bin/yorick clean -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756706: mlpack: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: mlpack Version: 1.0.8-1 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2snyAAoJEO/obGx//s+D4YgH/1c9t8GjnX8B3p95NwP9JJOi qM9Up79tzaFC9yFiIDFAmSwq/K6L01j7KXT3SrRLcLOV/KCBVo0EnxPsVQgsae50 3Dc5ZRXTKs5cJDtecLWS05LdlSXAL/2VGJqgxGILTU+61dm7LPW+FrH96QxmPV6z OO9F0kGilzx3R+kHHpfSyWp3ahAB2pR81Cpeg5cxxaWAi9Uil/WthNXhTYVaSjlJ tmclm8ogzDcLs7u9p16MT97Gk7O1jF5Bg9AErzUK7sdIQ+jtfmqUa5eB6oFUulNI Wz1btsYNcyx+mUxveEWFTQUmCNr40G11fNDZ2Wrz44pf6+13FfEKKs6k+vkKtwc= =jay0 -END PGP SIGNATURE- diff -Nru mlpack-1.0.8/debian/changelog mlpack-1.0.8/debian/changelog --- mlpack-1.0.8/debian/changelog 2014-04-12 09:32:10.0 +0200 +++ mlpack-1.0.8/debian/changelog 2014-07-24 14:32:02.0 +0200 @@ -1,3 +1,10 @@ +mlpack (1.0.8-1.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + + -- Gilles Filippini p...@debian.org Thu, 24 Jul 2014 14:31:55 +0200 + mlpack (1.0.8-1) unstable; urgency=medium * Initial release (closes: #660925, #743710) diff -Nru mlpack-1.0.8/debian/rules mlpack-1.0.8/debian/rules --- mlpack-1.0.8/debian/rules 2014-04-12 09:33:54.0 +0200 +++ mlpack-1.0.8/debian/rules 2014-07-31 19:25:14.0 +0200 @@ -2,6 +2,10 @@ # export DH_VERBOSE=1 +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),) + export DEB_CXXFLAGS_MAINT_APPEND := -I/usr/include/hdf5/serial +endif + %: dh $@ --parallel -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756705: gnuplot-iostream: [hdf5 transition] please support hdf5 1.8.13 new packaging layout
Source: gnuplot-iostream Version: 0~20130604.gitdd47c7a-1 Severity: important Tags: patch User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The hdf5 1.8.13 package in experimental features a new layout for headers and libraries, so that all the binary packages are now co-installable. Please find attached a patch proposal to support both the current and the new layouts. Because this bug is in the way of the hdf5 transition I intend to NMU in a few days. I apologize for the urge, and I hope this approach won't offend you. Please tell me otherwise. Kind regards, _g. - -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (500, 'testing'), (1, 'experimental') Architecture: i386 (i686) Kernel: Linux 3.14-1-486 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQEcBAEBCAAGBQJT2snIAAoJEO/obGx//s+DIHMIAKG2w84Q8DRN12TXuRm90XBa 3PbAWcSWGXSwPChJrOKuiyG0XERxnoJTLojs70rYGU/MjTCIio2EeR9VNhDE9w8T IsIvQyBK2eq6bXTfPB6LDfk0jI44q2/UEOTNWRmNVmBHaN1ofR08eedr/zxy1GEL 5xh0jGI2JXV+q36z+iEPt2aXkE7Bdox25aZc/E3SE+YZUTKJNx6eOceE28HttBHz 83K16V1hQejLSg40By21Xk1yFU+jiwHNCqUGjyezhQVYzZbaIv8V9fHyOnpOr0Vc yrPFwiLa1FkXzy7F2W8EfWU3tCUnTGPdZVYMPDhoXG2i0D6x+WGsJXU+Zc3NefU= =hnxY -END PGP SIGNATURE- diff -Nru gnuplot-iostream-0~20130604.gitdd47c7a/debian/changelog gnuplot-iostream-0~20130604.gitdd47c7a/debian/changelog --- gnuplot-iostream-0~20130604.gitdd47c7a/debian/changelog 2013-06-05 08:33:10.0 +0200 +++ gnuplot-iostream-0~20130604.gitdd47c7a/debian/changelog 2014-07-24 13:56:12.0 +0200 @@ -1,3 +1,10 @@ +gnuplot-iostream (0~20130604.gitdd47c7a-1.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout + + -- Gilles Filippini p...@debian.org Thu, 24 Jul 2014 13:55:35 +0200 + gnuplot-iostream (0~20130604.gitdd47c7a-1) unstable; urgency=low * [642dade] Imported Upstream version 0~20130604.gitdd47c7a diff -Nru gnuplot-iostream-0~20130604.gitdd47c7a/debian/rules gnuplot-iostream-0~20130604.gitdd47c7a/debian/rules --- gnuplot-iostream-0~20130604.gitdd47c7a/debian/rules 2013-06-05 08:22:24.0 +0200 +++ gnuplot-iostream-0~20130604.gitdd47c7a/debian/rules 2014-07-31 19:23:48.0 +0200 @@ -1,4 +1,8 @@ #!/usr/bin/make -f +ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),) + export DEB_CXXFLAGS_MAINT_APPEND := -I/usr/include/hdf5/serial +endif + %: dh $@ --parallel -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Processing of alberta_3.0.1-1_source.changes
alberta_3.0.1-1_source.changes uploaded successfully to localhost along with the files: alberta_3.0.1-1.dsc alberta_3.0.1.orig.tar.xz alberta_3.0.1-1.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
gerris_20131206+dfsg-1_amd64.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Format: 1.8 Date: Fri, 01 Aug 2014 00:32:32 +0200 Source: gerris Binary: gerris gerris-mpi libgfs-1.3-2 libgfs-dbg libgfs-dev libgfs-mpi-1.3-2 libgfs-mpi-dev Architecture: source amd64 Version: 20131206+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers debian-science-maintainers@lists.alioth.debian.org Changed-By: Anton Gladky gl...@debian.org Description: gerris - Fluid Flow Solver gerris-mpi - Fluid Flow Solver libgfs-1.3-2 - Fluid Flow Solver -- shared libraries libgfs-dbg - Fluid Flow Solver -- libraries with debugging symbols libgfs-dev - Fluid Flow Solver -- development libraries and headers libgfs-mpi-1.3-2 - Fluid Flow Solver -- shared libraries libgfs-mpi-dev - Fluid Flow Solver -- development libraries and headers Closes: 727867 Changes: gerris (20131206+dfsg-1) unstable; urgency=medium . * [8fe0565] Update watch-file. * [bb1c3c7] Use DEP-5 for d/copyright. * [653f6dd] Imported Upstream version 20131206+dfsg * [4180f06] Refresh patches. * [652d9bc] Add missing build_functions file. * [2574e98] Replace ffmpeg command by avconv. * [3141ff8] Add missing Makefile.in. * [23b1801] Minor update in install-files, use autoreconf. (Closes: #727867) * [295e03c] Use wrap-and-sort. * [a34c986] Add autopkgtest. Checksums-Sha1: 411fd940a173b1a332cc650ae398f93fb4a43e18 2560 gerris_20131206+dfsg-1.dsc 9f946a30d294165ad0cf1f3f7ab5b385f282d6f5 2834149 gerris_20131206+dfsg.orig.tar.gz 35a8364a7d818f05e437d0fb05aa1f4d1a15dad3 17092 gerris_20131206+dfsg-1.debian.tar.xz 85811b89545d3f44c7da296d3f5ab67da99c0151 278828 gerris_20131206+dfsg-1_amd64.deb 3fc8b5aec91624c40c1312986704d65176a0ff2d 282416 gerris-mpi_20131206+dfsg-1_amd64.deb 8fbcd8e9a879d12f7a0a92788e557ab5354dad21 540958 libgfs-1.3-2_20131206+dfsg-1_amd64.deb e7319c1a10c181e1621f39716ded92994846d1f3 4298166 libgfs-dbg_20131206+dfsg-1_amd64.deb 026bbec462e3af89a60b07a1fdfe3c5a74e8ff09 102414 libgfs-dev_20131206+dfsg-1_amd64.deb a7244d22b6e629acfd0e0853bfd68080d2a1ff5a 550282 libgfs-mpi-1.3-2_20131206+dfsg-1_amd64.deb adc492e38ecbc0732b04b54b8f6c3e8dc9cb90c3 102448 libgfs-mpi-dev_20131206+dfsg-1_amd64.deb Checksums-Sha256: e875a55ff90ab413d6b8e919910e603119ac490eeba02750da1c99dfa2616cdd 2560 gerris_20131206+dfsg-1.dsc d7d03d3c3252090751bef6fb8252665fc2c95be108998329517e9d4a5aeb1c18 2834149 gerris_20131206+dfsg.orig.tar.gz 5092d0dafef6e3ae24dde792cb840b97fedaec09f7dd12acdd5b5324c4def521 17092 gerris_20131206+dfsg-1.debian.tar.xz d208e09becc15a99830d71947d41f0e1a1c6ac1df1a58f85d03240ce1aac6ea3 278828 gerris_20131206+dfsg-1_amd64.deb 4de13190153f08534ad7c9455af4d2a8c94c79e2432b9cae4e854b257f705712 282416 gerris-mpi_20131206+dfsg-1_amd64.deb f4c503fc495b9404e881ecb57234c49885e3ac5e419f0531e240d105432e3e23 540958 libgfs-1.3-2_20131206+dfsg-1_amd64.deb 8b4bd1c4238dd55331fbe1496a24c774d932897925dcfbcbf6f214a7d3abfc2e 4298166 libgfs-dbg_20131206+dfsg-1_amd64.deb ce64be72293a9c30046f2c809f84f3a366db4be67826fbc50a80055bb84233a6 102414 libgfs-dev_20131206+dfsg-1_amd64.deb f3029d88fc8629e627a59aff7ec0a9beec929f842e39a9bc1ff2571a8c7be83f 550282 libgfs-mpi-1.3-2_20131206+dfsg-1_amd64.deb 2095001b1287f4246a0a1913b30214310cc00e0f22ad9a1b36420d25cce35db4 102448 libgfs-mpi-dev_20131206+dfsg-1_amd64.deb Files: aa173809a1def2bd457ae7046aee77a8 278828 science optional gerris_20131206+dfsg-1_amd64.deb d0306aa765be4ed1b4ccfe57c23f3600 282416 science optional gerris-mpi_20131206+dfsg-1_amd64.deb 57ed32d1096bbdfd29ff1e3fc3ccef8e 540958 devel optional libgfs-1.3-2_20131206+dfsg-1_amd64.deb 31c4241c7cd5160f9ef3ceac3672f8d1 4298166 debug extra libgfs-dbg_20131206+dfsg-1_amd64.deb 7b450975e1052141c0ac32294df9ee88 102414 libdevel optional libgfs-dev_20131206+dfsg-1_amd64.deb 4b308b6eb23a9d1332e481ff6a9125d3 550282 devel optional libgfs-mpi-1.3-2_20131206+dfsg-1_amd64.deb 84c6a84852a1c2b97687780e82c95253 102448 libdevel optional libgfs-mpi-dev_20131206+dfsg-1_amd64.deb fa5a8f78b33057c0aebc8a6e9c1774a9 2560 science optional gerris_20131206+dfsg-1.dsc 230cd5311f96d25809c2534d150386b5 2834149 science optional gerris_20131206+dfsg.orig.tar.gz 999f8273f23d22010cc5ec48eaec5264 17092 science optional gerris_20131206+dfsg-1.debian.tar.xz -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBAgAGBQJT2sdbAAoJENPhc4PPp/8GTMIP/jSOeEVs0BT1IhK+gd2x0brS 7iPfR80tVau3c4MUPPDcv5ZEaGDq4KrbMVmkA3a3BxZeU6kKQN/z2q/w93cU6iyj 8ZitOSqp6QRREVUwna0NsoFIOVqqZW+U3/yP1B3/MQHkwZoVdOqEdHVZqEuNLG/C M1n7B6zU7E6Aqg+zhr8t0rE1V0o08Bu1Klzl3e09Gg94HZmdE8xmIzVGV4xuy1yQ shkZzy9nhYQQSlIkyz/E2+wps52FgKDiyjI0vACS6cDQ/3ppyCeaBP61wZquXlXD qzClLBFvIV7qDUFffxKedhFz6J/GlE2MLld01TWRZBvwUNrT0z3+PMPG5CaHCOVJ nHp0zNhxGN7UHwaEdD52XaJ10JW5E55eZ+76AvWQwJlzO1gglYADVXO5gYFSHu8K sr21wLuSYJyDbfMCuWytxwrUkqL3aihWRbsnXnRGj39YQsTnY8joXAiGClX010R3 O7nt5KdcWvw97AXMBiLXhPpHIIjk0+7+NBohbynKHaqNLV+5iFbD5Y6IgwIv7XAd
alberta_3.0.1-1_source.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Fri, 01 Aug 2014 00:30:26 +0200 Source: alberta Binary: libalberta-dev libalberta4 libalberta-dbg libalberta2-dev Architecture: source Version: 3.0.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers debian-science-maintainers@lists.alioth.debian.org Changed-By: Ansgar Burchardt ans...@debian.org Description: libalberta-dbg - adaptive finite element library (debug symbols) libalberta-dev - adaptive finite element library (development files) libalberta2-dev - adaptive finite element library (transitional package) libalberta4 - adaptive finite element library (library) Changes: alberta (3.0.1-1) unstable; urgency=medium . * New upstream release. * Drop patch fix-pkg-config.diff: applied upstream. * debian/copyright: Drop note about old license in demo/COPYING. Checksums-Sha1: bf682aae2fdaa4699cb4e170443e86f2218aa8c9 2181 alberta_3.0.1-1.dsc 69e5c69ec8a51fbd1bb5ef67a1c1be7fe314f3a7 813252 alberta_3.0.1.orig.tar.xz ddcf864eddedb29b3bc334f894bae24d948494d2 3952 alberta_3.0.1-1.debian.tar.xz Checksums-Sha256: 9bab5148fbd48f29381d2fa689d721d7fccea9b87895af7d26200533d72c2cce 2181 alberta_3.0.1-1.dsc 91b13ce65f3ca36eb408515d7c53b418af1d822334de990e190c9d0e5b3a7e16 813252 alberta_3.0.1.orig.tar.xz 21437112a8bbbf7afad3b73cd0ba07e1d10a4dbcce8b19b02133274392a93bc7 3952 alberta_3.0.1-1.debian.tar.xz Files: db586daeb226e7dc69e32fa2e5eae665 2181 libs optional alberta_3.0.1-1.dsc 30a1eb78e7bd452489c5aba9879893c8 813252 libs optional alberta_3.0.1.orig.tar.xz a6e648619915cd1f1d4001bdb8548356 3952 libs optional alberta_3.0.1-1.debian.tar.xz -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBCgAGBQJT2sp6AAoJEIATJTTdNH3IhlUQAJWJng1TL5Mdwnq0fuAG5RYh ILP6ls87OWgT/tfG2cD5rYhlwcmWylZN6ehScxMTxXMJ3XychmhX5sH/6umGmrM7 e3HYoAWbibWhiMDoiJhHtIvivfwnKVRycBBmO9FOjcHN8K6VwBv96kS5hgCnMa2G t1NQIwJRiBc3yIM+A4au9wD/y0TcIKVcbcDvoxPpysfImN5hbz5nYXuf1F7TpSbm q/KtNypY2dKa4oFLErd/jearwGHwqL/5uDMJ60NQAL3/JevpJsQ3TtBc0NBCvrEM +uyhEuQNpVebcDYKuJKdKIHmkgMzpQTGgjMbPLNglxZosw11Leu5n/GcZazJ28bH EPuHm3TStuhBnu0MnQ6On8MhXsVWP1lyGvR070FmlFjJsss0Fl9hc8WPy8VSyXj/ ASSK0Fy7Orbo0PgXtAyLDt2S+Xuui6s9xtlDXgV23iD7Y4xXn74d1F/CrL0NDx8I kJhoO0rrxLF0qCfhPw1yxq5rakiCrPrXr8CJyq22xFCtYZ0qlTnVZbC5jL0kCsmr 0xdfutjSUYXA4ngpW28TPABkUSKqVp7MlBe9391YxrpuS867okR/e44oRYQAVyFz dJAR94ml3d9bZpK0LvedLSUVrEQ8sb4YnzWavcyW/qEg1M4TnQxIeGwFnQj5VZUv arJyP6tueZabRBwmVe6D =5NAe -END PGP SIGNATURE- Thank you for your contribution to Debian. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#727867: marked as done (gerris: run dh-autoreconf to update config.{sub,guess} and {libtool,aclocal}.m4)
Your message dated Thu, 31 Jul 2014 23:04:02 +
with message-id e1xczoe-pr...@franck.debian.org
and subject line Bug#727867: fixed in gerris 20131206+dfsg-1
has caused the Debian Bug report #727867,
regarding gerris: run dh-autoreconf to update config.{sub,guess} and
{libtool,aclocal}.m4
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
727867: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=727867
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: src:gerris
Version: 20110329-dfsg.2-1
Severity: normal
User: debian-...@lists.debian.org
Usertags: arm64
The package fails to build on arm64 (aarch64-linux-gnu), because the
config.{guess,sub} files are out of date, and are not updated during
the build. If possible, please do not update these files directly,
but build-depend on autotools-dev instead, and use the tools provided
by autotools-dev to update these files.
- For dh, call dh --with autotools_dev (yes, underscore).
- For other rules files, call dh_autotools-dev_updateconfig before
calling configure (in the build or configure target), and call
dh_autotools-dev_restoreconfig before calling dh_clean in the clean
target.
For combining autoreconf and autotools_dev, see bug #698765.
After the build on any architecture, and before a clean, a grep for
aarch64 in the config.sub file(s) should print some lines.
The full build log can be found at:
http://people.debian.org/~doko/logs/arm64-20131027/buildlog_ubuntu-trusty-arm64.gerris_20110329-dfsg.2-1build1_FAILEDTOBUILD.txt
The last lines of the build log are at the end of this report.
Please note that these build were done in an Ubuntu development,
environment there may be a few false positives in these bug reports.
[...]
Restoring doc/examples/Makefile.in
Restoring doc/Makefile.in
Removing patch 01_automake_doc_examples
Restoring doc/examples/Makefile.am
Restoring doc/Makefile.am
No patches applied
dh_clean
debian/rules build-arch
dh --with quilt build-arch
dh_testdir -a
dh_quilt_patch -a
Applying patch 01_automake_doc_examples
patching file doc/examples/Makefile.am
patching file doc/Makefile.am
Applying patch debian-changes-20110329-dfsg.2-1
patching file doc/Makefile.in
patching file doc/examples/Makefile.in
Now at patch debian-changes-20110329-dfsg.2-1
debian/rules override_dh_auto_configure
make[1]: Entering directory `/build/buildd/gerris-20110329-dfsg.2'
dh_auto_configure --builddirectory=debian/build -- --disable-mpi
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking build system type... Invalid configuration `aarch64-linux-gnu':
machine `aarch64' not recognized
configure: error: /bin/bash ../../config.sub aarch64-linux-gnu failed
dh_auto_configure: ../../configure --build=aarch64-linux-gnu --prefix=/usr
--includedir=${prefix}/include --mandir=${prefix}/share/man
--infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var
--libexecdir=${prefix}/lib/gerris --disable-maintainer-mode
--disable-dependency-tracking --disable-mpi returned exit code 1
make[1]: *** [override_dh_auto_configure] Error 2
make[1]: Leaving directory `/build/buildd/gerris-20110329-dfsg.2'
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
---End Message---
---BeginMessage---
Source: gerris
Source-Version: 20131206+dfsg-1
We believe that the bug you reported is fixed in the latest version of
gerris, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 727...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
pygts_0.3.1-6_amd64.changes ACCEPTED into unstable
Accepted: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Format: 1.8 Date: Fri, 01 Aug 2014 00:40:19 +0200 Source: pygts Binary: python-gts Architecture: source amd64 Version: 0.3.1-6 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers debian-science-maintainers@lists.alioth.debian.org Changed-By: Anton Gladky gl...@debian.org Description: python-gts - Python wrapper for the GNU Triangulated Surface library (GTS) Changes: pygts (0.3.1-6) unstable; urgency=medium . * [7cf772a] Redirect unittest output into stdout instead of stderr, hopefully fixes autopkgtests. Checksums-Sha1: 8416faf9a11d014e51673d80a52291438e0797ff 2012 pygts_0.3.1-6.dsc 1e02db122ba32133413527175709101108499d29 13856 pygts_0.3.1-6.debian.tar.xz 7da8a7678555d7b84357e5a3c6b0485cc8c77fa6 82442 python-gts_0.3.1-6_amd64.deb Checksums-Sha256: 85fbbc1a917d48b4e1a0d241a16591cb92ab0657db92cd68f7d7e5cffc146776 2012 pygts_0.3.1-6.dsc d41fa80a1770963e0e7cfb9985a76c1eb223295970478439b56a609d79ad87c0 13856 pygts_0.3.1-6.debian.tar.xz ee4bdd51630157f7f80967012f72b3f8289ef8f4fc08ac920ebac895b3120f94 82442 python-gts_0.3.1-6_amd64.deb Files: bf8e22c0aae3342a36269a02283d633a 82442 python optional python-gts_0.3.1-6_amd64.deb c83970258723cc954131d23a8cfc8e2e 2012 python optional pygts_0.3.1-6.dsc 3b6522deace0e9cbf5c7885500e84872 13856 python optional pygts_0.3.1-6.debian.tar.xz -BEGIN PGP SIGNATURE- Version: GnuPG v1 iQIcBAEBAgAGBQJT2sa3AAoJENPhc4PPp/8GmLkP/Rf/w/XEPsPFr6FMs7Npa0w7 QnyYE640gJeuVg1C65vd4sF3KQ1P3fhnH11nT7kzRCWCqLlqEwO8u77ezZL7/OB1 cwG6iYcrx+AOvDSX8ZNcvxb9UwG1VSw3XNnSaDuB6OmyQNTd1nhgqyhITmrR0TDd /qzL3kGPUuqiyfIcSdTSzPVvW/yRG5r9yP8zj6rNbgy2YEnqiQELMDiieYxyRJ1x zRPiMsi+iDXNDijbgNmd9TLJ9Qc5u/zMdq7+mU4cN2NELeb+hhQkB8aquEqfXJ7Q 0MzqglJAybX/6omo9UzUmpoPpoDQydy79NTV24mbEo761PqExwAcVRjaRBaIn+ej M6onYaDIeQ90+MPnnbq8MuI9GErYQAC996x3SPGJy6Yuvg68gTMAF45MNNC7B0fU RunJ2vuROoRyzMhVmFwhzx9u3Fg/VSlD/Dq4kykhk+vhS4mOIt2yna1+ACMYmFiu 5vJSOkwzSYylvbGP6slc91SaXoQtTwI8QfGkmpr9nw2QvTL0ElehX5FZNKc+fY5a 9qcpMblGJUXtbXIX03OOVXANWGUL6hi3D4H20yutBV/YBgmHledI8ix8AHmMO6UW ZfGXS/G/sjjkUPw29WUE1XCl2BEQkOdKplYIvwcsPe05kMwAGZQ3MEswVPQClWWt QF/F/NIbNWL5pi1DTSgK =eA2G -END PGP SIGNATURE- Thank you for your contribution to Debian. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Processed: tagging 756163, severity of 756163 is grave
Processing commands for cont...@bugs.debian.org: tags 756163 + confirmed Bug #756163 [gnuplot-qt] [gnuplot-qt] Doesn't provide gnuplot-x11 Added tag(s) confirmed. severity 756163 grave Bug #756163 [gnuplot-qt] [gnuplot-qt] Doesn't provide gnuplot-x11 Severity set to 'grave' from 'important' thanks Stopping processing here. Please contact me if you need assistance. -- 756163: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756163 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#756163: Processed: tagging 756163, severity of 756163 is grave
2014-08-01 6:06 GMT+02:00 Debian Bug Tracking System ow...@bugs.debian.org: severity 756163 grave Bug #756163 [gnuplot-qt] [gnuplot-qt] Doesn't provide gnuplot-x11 Severity set to 'grave' from 'important' why have you done it? Anton -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
