Bug#864004: dune-grid: FTBFS, and cruft package, on hurd-i386

2017-06-02 Thread Ralf Treinen 
Source: dune-grid
Version: 2.5.0-1
User: trei...@debian.org
Usertags: edos-uninstallable

Hi,

dune-grid fails to build on hurd-i386 (unsatisfiable build-dependency on 
libdune-common-dev), but did build in the past.

As a consequence, we now have on hurd-i386 a crufty binary package
libdune-grid-2.3.1, which is not installable. In case you decide not
to fix the FTBFS, please consider asking for removal of
libdune-grid-2.3.1:hurd-i386.

Thanks -Ralf.

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Bug#863828: python3-instant: undefined symbol: PyClass_Type during interpolate

2017-06-02 Thread Drew Parsons 
On Thu, 1 Jun 2017 10:39:37 +0200 Johannes Ring 
wrote:
> On Thu, Jun 1, 2017 at 10:24 AM, Drew Parsons 
wrote:
> > Should the vtk section in UseDOLFIN.cmake be controlled with some
> > python3 test, so VTK is still pulled in for python2?
> 
> Yes, we can do that, although I believe the vtk section in
> UseDOLFIN.cmake is not important. I will make a patch.


It's still failing, with python-ffc 2016.2.0-3 and libdolfin-dev
2016.2.0-4 (with UseDOLFIN.cmake patched).

In [4]: u = interpolate(Expression('x[0] + x[1]', degree=1), V)
Calling DOLFIN just-in-time (JIT) compiler, this may take some time.
--- Instant: compiling ---
In instant.import_module_directly: Failed to import module 
'dolfin_ee8f3791ac0429f005de8924557ccde25f2d90f2' from 
'/home/drew/.cache/instant/python3.5/cache/dolfin_ee8f3791ac0429f005de8924557ccde25f2d90f2';
ImportError:dynamic module does not define module export function 
(PyInit__dolfin_ee8f3791ac0429fd87a23c24557ccde25f2d90f2);
Failed to import module found in cache. Modulename: 
'dolfin_ee8f3791ac0429fd87a23c24557ccde25f2d90f2';
Path: 
'/home/useruser/.cache/instant/python3.5/cache/dolfin_ee8f3791ac0429fd87a23c24557ccde25f2d90f2';
ImportError:dynamic module does not define module export function 
(PyInit__dolfin_ee8f3791ac0429fd87a23c24557ccde25f2d90f2);
---
AssertionErrorTraceback (most recent call last)
 in ()
> 1 u = interpolate(Expression('x[0] + x[1]', degree=1), V)

/usr/lib/python3/dist-packages/dolfin/functions/expression.py in __new__(cls, 
cppcode, *args, **kwargs)
652 cpp_base, members = compile_expressions([cppcode],
653 
[generic_function_members],
--> 654 
mpi_comm=kwargs.get("mpi_comm"))
655 cpp_base, members = cpp_base[0], members[0]
656 

/usr/lib/python3/dist-packages/dolfin/compilemodules/expressions.py in 
compile_expressions(cppargs, generic_function_members, mpi_comm)
212 "\n\n".join(code_snippets), classnames,
213 additional_declarations="\n".join(additional_declarations),
--> 214 mpi_comm=mpi_comm)
215 
216 return expression_classes, all_members

/usr/lib/python3/dist-packages/dolfin/compilemodules/expressions.py in 
compile_expression_code(code, classnames, module_name, additional_declarations, 
mpi_comm)
139 compiled_module = compile_extension_module(
140 code, additional_declarations=additional_declarations,
--> 141 mpi_comm=mpi_comm)
142 
143 # Get the compiled class

/usr/lib/python3/dist-packages/dolfin/compilemodules/jit.py in mpi_jit(*args, 
**kwargs)
 66 # Just call JIT compiler when running in serial
 67 if MPI.size(mpi_comm) == 1:
---> 68 return local_jit(*args, **kwargs)
 69 
 70 # Compile first on process 0

/usr/lib/python3/dist-packages/dolfin/compilemodules/compilemodule.py in 
compile_extension_module(code, module_name, additional_declarations, 
additional_system_headers, mpi_comm, **instant_kwargs)
470 code=code,
471 additional_declarations=additional_declarations,
--> 472 **instant_kwargs)
473 
474 sys.stdout.flush()

/usr/lib/python3/dist-packages/instant/build.py in build_module(modulename, 
source_directory, code, init_code, additional_definitions, 
additional_declarations, sources, wrap_headers, local_headers, system_headers, 
include_dirs, library_dirs, libraries, swigargs, swig_include_dirs, cppargs, 
lddargs, object_files, arrays, generate_interface, generate_setup, 
cmake_packages, signature, cache_dir)
585 
586 # Import module and place in memory cache
--> 587 module = import_and_cache_module(module_path, modulename, 
moduleids)
588 
589 if not module:

/usr/lib/python3/dist-packages/instant/cache.py in 
import_and_cache_module(path, modulename, moduleids)
 90 module, e = import_module_directly(path, modulename)
 91 instant_assert(module is not None, "Failed to import module found 
in cache. Modulename: '%s';\nPath: '%s';\n%s:%s;" % (modulename, path, 
type(e).__name__,
---> 92 
   e))
 93 for moduleid in moduleids:
 94 place_module_in_memory_cache(moduleid, module)

/usr/lib/python3/dist-packages/instant/output.py in instant_assert(condition, 
*message)
101 _log.error(*message)
102 text = message[0] % message[1:]
--> 103 raise AssertionError(text)
104 
105 

AssertionError: Failed to import module found in cache. Modulename: 
'dolfin_ee8f3791ac0429fd87a23c24557ccde25f2d90f2';
Path:

hy

2017-06-02 Thread BARCLAYS BANK INTERNATIONAL PLC BARCLAYS BANK INTERNATIONAL PLC 


urgently reply me now for more information
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Processed: Re: Bug#863919: Acknowledgement (sympow segfaults with basic input)

2017-06-02 Thread Debian Bug Tracking System 
Processing control commands:

> severity -1 minor
Bug #863919 [sympow] sympow segfaults with basic input
Severity set to 'minor' from 'important'
> retitle -1 segfaults when MALLOC_PERTURB_ is set
Bug #863919 [sympow] sympow segfaults with basic input
Changed Bug title to 'segfaults when MALLOC_PERTURB_ is set' from 'sympow 
segfaults with basic input'.

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Bug#863919: Acknowledgement (sympow segfaults with basic input)

2017-06-02 Thread Ximin Luo 
Control: severity -1 minor
Control: retitle -1 segfaults when MALLOC_PERTURB_ is set

Hi Jerome, it happens on stretch/sid. This is what I have installed:

Versions of packages sympow depends on:
ii  dpkg 1.18.24
ii  libc62.24-10
ii  pari-gp  2.9.1-1
ii  sympow-data  1.023-8

However, I just did some more tests and have tracked this down to me setting 
MALLOC_PERTURB_ in my .xsession. The error goes away if I unset it:

$ env -u MALLOC_PERTURB_ sympow -curve "[0,-1,1,-10,-20]" -analrank
[..]
Done with small primes 1049
Analytic Rank is 0 : L-value 2.53842e-01

$ sympow -curve "[0,-1,1,-10,-20]" -analrank
[..]
Done with small primes 1049
Segmentation fault
139

MALLOC_PERTURB_ is a glibc envvar that causes malloc() and free() to set memory 
- see "man mallopt" - which I was testing locally to see if it might be a good 
security defense against attacks like HeartBleed and Cloudbleed.

Since it's not a default envvar that most users would set, I'll downgrade the 
severity of this bug. However I haven't experienced any problems with other 
programs, so I would guess that sympow is using malloc/free in a weird way, 
which may be worth revisiting if you have time.

X

Jerome BENOIT:
> Hello Ximin, thanks for your report.
> 
> Do you meant that the issue happens on Stretch ?
> I ask because I thought it happens on experimental and because the CI test 
> does not currently fail.
> 
> Thanks,
> Jerome 
> 
> On 02/06/17 14:34, Ximin Luo wrote:
>> BTW the stretch release date is soon:
> 
>> https://lists.debian.org/debian-devel-announce/2017/05/msg2.html
> 
>> The deadline for fixing this is June 9th and you'll need to file an unblock 
>> request, asking them to reduce the default migration time of 10 days.
> 
>> I'm not sure if this bug warrants raising the severity to grave, but please 
>> do that if appropriate.
> 
>> X
> 
> 
> 

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Bug#863919: Acknowledgement (sympow segfaults with basic input)

2017-06-02 Thread Jerome BENOIT 
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Hello Ximin, thanks for your report.

Do you meant that the issue happens on Stretch ?
I ask because I thought it happens on experimental and because the CI test does 
not currently fail.

Thanks,
Jerome 

On 02/06/17 14:34, Ximin Luo wrote:
> BTW the stretch release date is soon:
> 
> https://lists.debian.org/debian-devel-announce/2017/05/msg2.html
> 
> The deadline for fixing this is June 9th and you'll need to file an unblock 
> request, asking them to reduce the default migration time of 10 days.
> 
> I'm not sure if this bug warrants raising the severity to grave, but please 
> do that if appropriate.
> 
> X
> 

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https://qa.debian.org/developer.php?login=calcu...@rezozer.net
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Bug#863919: Acknowledgement (sympow segfaults with basic input)

2017-06-02 Thread Ximin Luo 
BTW the stretch release date is soon:

https://lists.debian.org/debian-devel-announce/2017/05/msg2.html

The deadline for fixing this is June 9th and you'll need to file an unblock 
request, asking them to reduce the default migration time of 10 days.

I'm not sure if this bug warrants raising the severity to grave, but please do 
that if appropriate.

X

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ffc_2016.2.0-3_amd64.changes ACCEPTED into unstable

2017-06-02 Thread Debian FTP Masters 


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 02 Jun 2017 11:00:02 +0200
Source: ffc
Binary: python-ffc python3-ffc
Architecture: source all
Version: 2016.2.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Johannes Ring 
Description:
 python-ffc - compiler for finite element variational forms (Python 2)
 python3-ffc - compiler for finite element variational forms (Python 3)
Changes:
 ffc (2016.2.0-3) unstable; urgency=medium
 .
   * d/patches/fix-float-division.patch: Add patch to fix float division
 of indices in tensorreordering.
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Processing of ffc_2016.2.0-3_amd64.changes

2017-06-02 Thread Debian FTP Masters 
ffc_2016.2.0-3_amd64.changes uploaded successfully to localhost
along with the files:
  ffc_2016.2.0-3.dsc
  ffc_2016.2.0-3.debian.tar.xz
  ffc_2016.2.0-3_amd64.buildinfo
  python-ffc_2016.2.0-3_all.deb
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gap-float_0.7.6+ds-2_source.changes ACCEPTED into unstable

2017-06-02 Thread Debian FTP Masters 


Accepted:

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Hash: SHA512

Format: 1.8
Date: Fri, 02 Jun 2017 06:23:19 +
Source: gap-float
Binary: gap-float
Architecture: source
Version: 0.7.6+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jerome Benoit 
Description:
 gap-float  - multi-precision floating-point computation for GAP
Changes:
 gap-float (0.7.6+ds-2) unstable; urgency=medium
 .
   * Debianization:
 - debian/tests/makecheck.tst, refresh;
 - debian/tests/*:
   - d/p/upstream-fix-autotoolization-tst.patch, introduce and submit.
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Processing of gap-float_0.7.6+ds-2_source.changes

2017-06-02 Thread Debian FTP Masters 
gap-float_0.7.6+ds-2_source.changes uploaded successfully to localhost
along with the files:
  gap-float_0.7.6+ds-2.dsc
  gap-float_0.7.6+ds-2.debian.tar.xz
  gap-float_0.7.6+ds-2_source.buildinfo

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